F316981

General Info

Members Datasets Scaffolds Average Seq Length
207 112 198 656

Family's Representative Sequence

Representative Sequence 3300048924|Ga0496121_0001004|Ga0496121_0001004_46724_48730
Length 662
Sequence MSIFRNDTVGSWTRGGQAIVHNVRMSTQVFFQTVLAGLILWVLGAVWYAFEVSTAYERFVLVKLIEASFKVDAAGGTNDPVQFHTPAGKGYWTSADWLFASKLGHAMLHKVEIDLIHGAMISGAVAGLALACAWFTFTRTGKGLGSNQFIRGARFGTARQLRRLLWCRRKGSFAIGGVPVPRAFEPEHILICGAPGTGKTHLILQMLVGIRKEGQRAIIYDTAGTFVEKFYRPGHDILLNPLDARSDHWSPWVDVPRVYHYDQIAEATIPDTSGDPFWAKAPRGTLVAVMRKLARDNRMLMSVLLDTVMRSKLKDLATFATGTDAAAFISVEGERTSAGIQAELASVMRSFSYLDDTRDGFSIRDWVSNERDDSWLFITVQEDQLPSLRPLITVWLDIAISAILSIQPDHRRRLYCIIDELPSLQRFLARARKYGGCGILGFQSYPQLEATYGAKEAAAVTGYCSTWVALRANDTLTAKHVSENLGQVEQVEANEGMSYGVNDMRDGVNLSRTQVTRPLVMPTEVTNLPNMAGFLRFGRNLPVLRFQDRYEPLPTRFPAFVDRTEPVIRLTEEEQPVSPPAPEPARTVPSAAPARKRKRAADKEWERDDDASPTLPFEKLAEDEGGERASPKPPRITLMGRRSSALRQHDRAHGDSNPAKPA

Samples

Sample ID Description Type Environment
1 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
2 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
3 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
4 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
5 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
6 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
7 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
8 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
9 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
10 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
11 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
12 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
13 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
27 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
28 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
29 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
30 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
31 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
43 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
45 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
59 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
68 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
69 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
70 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
71 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
72 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
73 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
74 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
75 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
76 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
77 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
78 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
79 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
80 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
81 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
82 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
83 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
84 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
85 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
86 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
87 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
88 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
89 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
90 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
91 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
92 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
93 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
94 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
95 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
96 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
97 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
101 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
102 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
105 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
106 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
107 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
108 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
109 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
110 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
111 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
112 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.65
Metatranscriptomes 0
Isolates 4.35

Biome Distribution

Category Percentage (%)
Aerial Root 0.97
Bulb 0
Endosphere 13.04
Nodule 0
Rhizoplane 0.97
Rhizosphere 66.18
Stem 0
Stem Tuber 0
Unclassified 18.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000078 3300001979 Bacteria 32989
2 JGI24739J22299_10000377 3300001989 Bacteria 15365
3 JGI24737J22298_10007964 3300001990 Bacteria 3561
4 JGI24735J21928_10000404 3300002067 Bacteria 15077
5 JGI24735J21928_10002969 3300002067 Bacteria 5839
6 JGI24735J21928_10004496 3300002067 Bacteria 4689
7 JGI24738J21930_10000001 3300002075 Bacteria 133921
8 JGI25165J46597_1000038 3300003214 Bacteria 283664
9 Ga0065165_1000570 3300005262 Bacteria 54738
10 Ga0070669_100003075 3300005353 Bacteria 12006
11 Ga0070671_100000113 3300005355 Bacteria 52082
12 Ga0070671_100002383 3300005355 Bacteria 14519
13 Ga0070667_100000053 3300005367 Bacteria 151974
14 Ga0070667_100003047 3300005367 Bacteria 14405
15 Ga0070667_100003210 3300005367 Bacteria 14005
16 Ga0068853_100000305 3300005539 Bacteria 34413
17 Ga0068855_100021602 3300005563 Bacteria 7720
18 Ga0068854_100005767 3300005578 Bacteria 7834
19 Ga0068852_100129620 3300005616 Bacteria 2321
20 Ga0068851_10000076 3300005834 Bacteria 56486
21 Ga0068863_100011709 3300005841 Bacteria 8483
22 Ga0068863_100043468 3300005841 Bacteria 4265
23 Ga0068860_100000344 3300005843 Bacteria 62777
24 Ga0068860_100000462 3300005843 Bacteria 50967
25 Ga0068860_100057506 3300005843 Bacteria 3697
26 Ga0068862_100000954 3300005844 Bacteria 27809
27 Ga0081455_10000089 3300005937 Bacteria 98248
28 Ga0081540_1023552 3300005983 Bacteria 3597
29 Ga0075368_10000319 3300006042 Bacteria 14103
30 Ga0075368_10004832 3300006042 Bacteria 4594
31 Ga0075367_10002950 3300006178 Bacteria 7945
32 Ga0075367_10017728 3300006178 Bacteria 3914
33 Ga0075370_10005945 3300006353 Bacteria 6107
34 Ga0075370_10007715 3300006353 Bacteria 5496
35 Ga0075370_10037200 3300006353 Bacteria 2736
36 Ga0105251_10001044 3300009011 Bacteria 24259
37 Ga0105240_10021638 3300009093 Bacteria 8550
38 Ga0105240_10048980 3300009093 Bacteria 5337
39 Ga0105240_10050577 3300009093 Bacteria 5237
40 Ga0105240_10151195 3300009093 Bacteria 2765
41 Ga0105248_10000425 3300009177 Bacteria 48192
42 Ga0105237_10001890 3300009545 Bacteria 26727
43 Ga0105237_10105047 3300009545 Bacteria 2816
44 Ga0105238_10003170 3300009551 Bacteria 16396
45 Ga0105249_10147658 3300009553 Bacteria 2260
46 Ga0105239_10000476 3300010375 Bacteria 58559
47 Ga0105239_10000621 3300010375 Bacteria 50420
48 Ga0105239_10002622 3300010375 Bacteria 22740
49 Ga0157371_10000976 3300013102 Bacteria 31779
50 Ga0157370_10000228 3300013104 Bacteria 71656
51 Ga0157370_10000344 3300013104 Bacteria 58781
52 Ga0157369_10000336 3300013105 Bacteria 62349
53 Ga0157372_10000507 3300013307 Bacteria 42811
54 Ga0163161_10034805 3300017792 Bacteria 3603
55 Ga0163161_10064728 3300017792 Bacteria 2668
56 Ga0209147_100969 3300025229 Bacteria 12582
57 Ga0209233_1000042 3300025261 Bacteria 510519
58 Ga0209050_1000636 3300025298 Bacteria 54442
59 Ga0209050_1002934 3300025298 Bacteria 13347
60 Ga0207656_10000127 3300025321 Bacteria 29039
61 Ga0207713_1005656 3300025735 Bacteria 7771
62 Ga0207647_10020297 3300025904 Bacteria 4456
63 Ga0207647_10042069 3300025904 Bacteria 2868
64 Ga0207695_10005060 3300025913 Bacteria 17677
65 Ga0207695_10036006 3300025913 Bacteria 5355
66 Ga0207695_10066676 3300025913 Bacteria 3695
67 Ga0207671_10002051 3300025914 Bacteria 22123
68 Ga0207644_10001613 3300025931 Bacteria 14553
69 Ga0207644_10002461 3300025931 Bacteria 11944
70 Ga0207711_10003648 3300025941 Bacteria 13310
71 Ga0207667_10010931 3300025949 Bacteria 10578
72 Ga0207640_10004068 3300025981 Bacteria 7900
73 Ga0207640_10012623 3300025981 Bacteria 4818
74 Ga0207658_10000363 3300025986 Bacteria 44647
75 Ga0207658_10000407 3300025986 Bacteria 40986
76 Ga0207658_10004536 3300025986 Bacteria 9646
77 Ga0207639_10000083 3300026041 Bacteria 81290
78 Ga0207641_10005431 3300026088 Bacteria 10877
79 Ga0207641_10011638 3300026088 Bacteria 7223
80 Ga0209813_10000038 3300027866 Bacteria 56808
81 Ga0209813_10000150 3300027866 Bacteria 23668
82 Ga0268265_10000944 3300028380 Bacteria 26703
83 Ga0268264_10000161 3300028381 Bacteria 150917
84 Ga0268264_10000482 3300028381 Bacteria 53056
85 Ga0307408_100000504 3300031548 Bacteria 33924
86 Ga0307408_100007977 3300031548 Bacteria 7001
87 Ga0307405_10004674 3300031731 Bacteria 6507
88 Ga0307405_10038228 3300031731 Bacteria 2891
89 Ga0307410_10041288 3300031852 Bacteria 3041
90 Ga0307406_10033445 3300031901 Bacteria 3147
91 Ga0307412_10004753 3300031911 Bacteria 7586
92 Ga0307412_10006826 3300031911 Bacteria 6477
93 Ga0307412_10018607 3300031911 Bacteria 4185
94 Ga0307414_10095272 3300032004 Bacteria 2224
95 Ga0307411_10047368 3300032005 Bacteria 2779
96 Ga0495627_002036 3300046453 Bacteria 10383
97 Ga0495627_002368 3300046453 Bacteria 9198
98 Ga0495638_0015332 3300046460 Bacteria 5149
99 Ga0495584_0030480 3300046491 Bacteria 2732
100 Ga0495596_0003762 3300046500 Bacteria 7573
101 Ga0495607_0018193 3300046501 Bacteria 4485
102 Ga0495583_0000032 3300046506 Bacteria 247728
103 Ga0495583_0002920 3300046506 Bacteria 13787
104 Ga0495606_0025626 3300046507 Bacteria 4219
105 Ga0495610_0000018 3300046512 Bacteria 355044
106 Ga0495610_0004099 3300046512 Bacteria 10917
107 Ga0495610_0004189 3300046512 Bacteria 10772
108 Ga0495610_0004385 3300046512 Bacteria 10443
109 Ga0495620_0015212 3300046515 Bacteria 3889
110 Ga0495637_0000040 3300046520 Bacteria 117062
111 Ga0495637_0000100 3300046520 Bacteria 65373
112 Ga0495637_0001712 3300046520 Bacteria 12623
113 Ga0495643_0000010 3300046522 Bacteria 341431
114 Ga0495643_0000037 3300046522 Bacteria 237688
115 Ga0495643_0000053 3300046522 Bacteria 202031
116 Ga0495643_0000073 3300046522 Bacteria 168344
117 Ga0495643_0000670 3300046522 Bacteria 40266
118 Ga0495633_0000054 3300046558 Bacteria 151646
119 Ga0495633_0001103 3300046558 Bacteria 21781
120 Ga0495633_0001404 3300046558 Bacteria 18778
121 Ga0495633_0005124 3300046558 Bacteria 8128
122 Ga0495633_0022695 3300046558 Bacteria 3119
123 Ga0495633_0032160 3300046558 Bacteria 2536
124 Ga0495625_0001861 3300046660 Bacteria 23998
125 Ga0495671_0000004 3300046692 Bacteria 545630
126 Ga0495671_0000014 3300046692 Bacteria 341431
127 Ga0495671_0000025 3300046692 Bacteria 240277
128 Ga0495671_0000031 3300046692 Bacteria 202030
129 Ga0495673_0000021 3300047469 Bacteria 545523
130 Ga0495681_0000056 3300047470 Bacteria 103692
131 Ga0495681_0000193 3300047470 Bacteria 51594
132 Ga0495681_0011193 3300047470 Bacteria 5362
133 Ga0495686_0000315 3300047472 Bacteria 80998
134 Ga0495686_0002233 3300047472 Bacteria 18721
135 Ga0495686_0003034 3300047472 Bacteria 14889
136 Ga0495686_0004069 3300047472 Bacteria 12216
137 Ga0495686_0007208 3300047472 Bacteria 8374
138 Ga0495686_0014526 3300047472 Bacteria 5416
139 Ga0495615_0000013 3300048090 Bacteria 61661
140 Ga0496103_0009216 3300048906 Bacteria 5848
141 Ga0496108_0016625 3300048911 Bacteria 6008
142 Ga0496116_0000153 3300048919 Bacteria 141137
143 Ga0496116_0000189 3300048919 Bacteria 122859
144 Ga0496117_0004296 3300048920 Bacteria 15866
145 Ga0496118_0001955 3300048921 Bacteria 29207
146 Ga0496118_0002017 3300048921 Bacteria 28709
147 Ga0496121_0000038 3300048924 Bacteria 351739
148 Ga0496121_0000072 3300048924 Bacteria 244975
149 Ga0496121_0000750 3300048924 Bacteria 59620
150 Ga0496121_0001004 3300048924 Bacteria 50403
151 Ga0496121_0001630 3300048924 Bacteria 37148
152 Ga0496121_0001819 3300048924 Bacteria 34405
153 Ga0496121_0006166 3300048924 Bacteria 15040
154 Ga0496121_0008035 3300048924 Bacteria 12577
155 Ga0496122_0000094 3300048925 Bacteria 202047
156 Ga0496122_0000996 3300048925 Bacteria 50450
157 Ga0496122_0004147 3300048925 Bacteria 18291
158 Ga0496123_0000337 3300048926 Bacteria 88727
159 Ga0496123_0000626 3300048926 Bacteria 59189
160 Ga0496123_0000672 3300048926 Bacteria 56467
161 Ga0496123_0001484 3300048926 Bacteria 32575
162 Ga0496123_0087088 3300048926 Bacteria 1870
163 Ga0496124_0000127 3300048927 Bacteria 158376
164 Ga0496124_0001014 3300048927 Bacteria 44551
165 Ga0496124_0001756 3300048927 Bacteria 30271
166 Ga0496124_0008151 3300048927 Bacteria 11001
167 Ga0496124_0029384 3300048927 Bacteria 4899
168 Ga0496124_0033624 3300048927 Bacteria 4509
169 Ga0496125_0005943 3300048928 Bacteria 13368
170 Ga0496125_0009672 3300048928 Bacteria 9851
171 Ga0496125_0065527 3300048928 Bacteria 2877
172 Ga0496125_0083386 3300048928 Bacteria 2432
173 Ga0496126_0009394 3300048929 Bacteria 10391
174 Ga0496126_0010748 3300048929 Bacteria 9558
175 Ga0496126_0111933 3300048929 Bacteria 2377
176 Ga0501033_0008408 3300049570 Bacteria 7993
177 Ga0501046_0049086 3300049580 Bacteria 3340
178 Ga0501047_0000710 3300049581 Bacteria 34732
179 Ga0501047_0001340 3300049581 Bacteria 24174
180 Ga0501047_0001385 3300049581 Bacteria 23805
181 Ga0501211_000150 3300049658 Bacteria 5575
182 Ga0501235_002435 3300049669 Bacteria 4012
183 Ga0501249_000169 3300049679 Bacteria 19984
184 Ga0501044_0000840 3300049823 Bacteria 36809
185 Ga0501044_0046639 3300049823 Bacteria 4486
186 Ga0501044_0117779 3300049823 Bacteria 2660
187 nmdc:mga06z11_206_c1 3300050494 Bacteria 23643
188 nmdc:mga06z11_41_c1 3300050494 Bacteria 53112
189 nmdc:mga04h51_115_c1 3300050495 Bacteria 23656
190 nmdc:mga04h51_27_c1 3300050495 Bacteria 53116
191 nmdc:mga07m45_100_c1 3300050496 Bacteria 33621
192 Ga0500556_0000021 3300053104 Bacteria 184159
193 Ga0500562_000551 3300053108 Bacteria 9035
194 Ga0500562_003960 3300053108 Bacteria 3736
195 Ga0500618_000859 3300053125 Bacteria 16316
196 Ga0500618_002764 3300053125 Bacteria 6382
197 Ga0500622_0000861 3300053156 Bacteria 25907
198 Ga0500624_000084 3300053157 Bacteria 47961

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048926 Ga0496123_0087088 Ga0496123_0087088_81_1820 525
2 3300046460 Ga0495638_0015332 Ga0495638_0015332_2828_4624 539
3 3300046558 Ga0495633_0022695 Ga0495633_0022695_1185_3095 544
4 3300048928 Ga0496125_0009672 Ga0496125_0009672_7998_9821 547
5 3300048927 Ga0496124_0029384 Ga0496124_0029384_190_1968 551
6 3300031911 Ga0307412_10018607 Ga0307412_100186073 573
7 3300046501 Ga0495607_0018193 Ga0495607_0018193_382_2358 579
8 3300048926 Ga0496123_0000672 Ga0496123_0000672_20125_22071 580
9 3300048925 Ga0496122_0004147 Ga0496122_0004147_10956_12926 583
10 3300048926 Ga0496123_0001484 Ga0496123_0001484_5538_7508 583
11 3300046506 Ga0495583_0000032 Ga0495583_0000032_116273_118309 586
12 3300046692 Ga0495671_0000004 Ga0495671_0000004_128752_130788 586
13 3300047469 Ga0495673_0000021 Ga0495673_0000021_128752_130788 586
14 3300005843 Ga0068860_100057506 Ga0068860_1000575063 588
15 3300006353 Ga0075370_10037200 Ga0075370_100372002 588
16 3300053108 Ga0500562_000551 Ga0500562_000551_3538_5589 588
17 3300047472 Ga0495686_0007208 Ga0495686_0007208_5417_7480 591
18 3300049669 Ga0501235_002435 Ga0501235_002435_46_1944 591
19 3300005367 Ga0070667_100003047 Ga0070667_1000030478 592
20 3300025986 Ga0207658_10000407 Ga0207658_1000040733 592
21 3300048919 Ga0496116_0000153 Ga0496116_0000153_10284_12242 592
22 3300048925 Ga0496122_0000094 Ga0496122_0000094_10284_12242 592
23 3300048926 Ga0496123_0000626 Ga0496123_0000626_46949_48907 592
24 3300009093 Ga0105240_10050577 Ga0105240_100505771 593
25 3300048911 Ga0496108_0016625 Ga0496108_0016625_226_2178 593
26 3300047470 Ga0495681_0000056 Ga0495681_0000056_18713_20665 596
27 3300048925 Ga0496122_0000996 Ga0496122_0000996_11940_13886 597
28 3300048926 Ga0496123_0000337 Ga0496123_0000337_65083_67029 597
29 3300048927 Ga0496124_0000127 Ga0496124_0000127_71253_73214 597
30 3300049823 Ga0501044_0046639 Ga0501044_0046639_403_2466 597
31 3300003214 JGI25165J46597_1000038 JGI25165J46597_100003822 598
32 3300025261 Ga0209233_1000042 Ga0209233_1000042144 598
33 3300005937 Ga0081455_10000089 Ga0081455_1000008989 599
34 3300046491 Ga0495584_0030480 Ga0495584_0030480_212_2164 599
35 3300046520 Ga0495637_0000100 Ga0495637_0000100_48903_50855 599
36 3300046522 Ga0495643_0000010 Ga0495643_0000010_303763_305715 599
37 3300046558 Ga0495633_0001404 Ga0495633_0001404_9700_11652 599
38 3300046692 Ga0495671_0000014 Ga0495671_0000014_303763_305715 599
39 3300049679 Ga0501249_000169 Ga0501249_000169_17836_19974 599
40 3300048924 Ga0496121_0000038 Ga0496121_0000038_228032_230035 600
41 3300048929 Ga0496126_0009394 Ga0496126_0009394_3183_5186 600
42 3300005355 Ga0070671_100000113 Ga0070671_10000011318 601
43 3300005841 Ga0068863_100011709 Ga0068863_1000117098 601
44 3300025931 Ga0207644_10002461 Ga0207644_1000246118 601
45 3300026088 Ga0207641_10011638 Ga0207641_100116384 601
46 3300005367 Ga0070667_100003210 Ga0070667_10000321011 602
47 3300025986 Ga0207658_10004536 Ga0207658_100045368 602
48 3300005367 Ga0070667_100000053 Ga0070667_1000000536 603
49 3300005843 Ga0068860_100000344 Ga0068860_1000003444 603
50 3300025986 Ga0207658_10000363 Ga0207658_1000036311 603
51 3300028381 Ga0268264_10000161 Ga0268264_10000161139 603
52 3300046453 Ga0495627_002368 Ga0495627_002368_6118_8073 603
53 3300046522 Ga0495643_0000670 Ga0495643_0000670_9371_11326 603
54 3300046558 Ga0495633_0000054 Ga0495633_0000054_74120_76075 603
55 3300053104 Ga0500556_0000021 Ga0500556_0000021_39536_41500 603
56 3300005539 Ga0068853_100000305 Ga0068853_1000003054 604
57 3300026041 Ga0207639_10000083 Ga0207639_1000008376 604
58 3300049581 Ga0501047_0000710 Ga0501047_0000710_17264_19345 604
59 3300010375 Ga0105239_10000621 Ga0105239_1000062110 606
60 3300025981 Ga0207640_10012623 Ga0207640_100126235 608
61 3300031548 Ga0307408_100000504 Ga0307408_10000050418 608
62 3300048927 Ga0496124_0001014 Ga0496124_0001014_26485_28530 608
63 3300048928 Ga0496125_0065527 Ga0496125_0065527_496_2448 608
64 3300009551 Ga0105238_10003170 Ga0105238_100031708 609
65 3300053157 Ga0500624_000084 Ga0500624_000084_13724_15769 609
66 3300005841 Ga0068863_100043468 Ga0068863_1000434683 610
67 3300005844 Ga0068862_100000954 Ga0068862_10000095421 610
68 3300026088 Ga0207641_10005431 Ga0207641_100054319 610
69 3300028380 Ga0268265_10000944 Ga0268265_1000094421 610
70 3300031731 Ga0307405_10004674 Ga0307405_100046743 610
71 3300031911 Ga0307412_10004753 Ga0307412_100047533 610
72 3300047472 Ga0495686_0000315 Ga0495686_0000315_25834_27879 610
73 3300048924 Ga0496121_0000072 Ga0496121_0000072_217218_219254 610
74 3300048929 Ga0496126_0010748 Ga0496126_0010748_2456_4492 610
75 3300049570 Ga0501033_0008408 Ga0501033_0008408_2240_4303 610
76 3300009177 Ga0105248_10000425 Ga0105248_1000042514 611
77 3300025941 Ga0207711_10003648 Ga0207711_100036487 611
78 3300046660 Ga0495625_0001861 Ga0495625_0001861_6624_8645 611
79 3300047472 Ga0495686_0003034 Ga0495686_0003034_1592_3631 611
80 3300048924 Ga0496121_0000750 Ga0496121_0000750_10071_12152 611
81 3300048924 Ga0496121_0001004 Ga0496121_0001004_46724_48730 612
82 3300048924 Ga0496121_0001819 Ga0496121_0001819_26675_28708 613
83 3300048928 Ga0496125_0083386 Ga0496125_0083386_338_2269 613
84 3300049658 Ga0501211_000150 Ga0501211_000150_2577_4631 613
85 3300005843 Ga0068860_100000462 Ga0068860_10000046240 614
86 3300028381 Ga0268264_10000482 Ga0268264_1000048239 614
87 3300047472 Ga0495686_0014526 Ga0495686_0014526_116_2161 614
88 3300048090 Ga0495615_0000013 Ga0495615_0000013_41110_43131 614
89 3300048924 Ga0496121_0001630 Ga0496121_0001630_34123_36057 614
90 3300048929 Ga0496126_0111933 Ga0496126_0111933_49_2016 614
91 3300049580 Ga0501046_0049086 Ga0501046_0049086_521_2671 614
92 3300049581 Ga0501047_0001340 Ga0501047_0001340_21938_24088 614
93 3300049823 Ga0501044_0117779 Ga0501044_0117779_130_2280 614
94 3300053108 Ga0500562_003960 Ga0500562_003960_1047_3008 614
95 3300031731 Ga0307405_10038228 Ga0307405_100382282 615
96 3300046507 Ga0495606_0025626 Ga0495606_0025626_561_2582 615
97 3300046512 Ga0495610_0004385 Ga0495610_0004385_1157_3178 615
98 3300046515 Ga0495620_0015212 Ga0495620_0015212_1543_3564 615
99 3300046522 Ga0495643_0000073 Ga0495643_0000073_98039_100132 615
100 3300006042 Ga0075368_10000319 Ga0075368_100003193 616
101 3300006042 Ga0075368_10004832 Ga0075368_100048325 616
102 3300006178 Ga0075367_10002950 Ga0075367_100029505 616
103 3300006178 Ga0075367_10017728 Ga0075367_100177281 616
104 3300006353 Ga0075370_10005945 Ga0075370_100059452 616
105 3300025229 Ga0209147_100969 Ga0209147_1009699 616
106 3300027866 Ga0209813_10000038 Ga0209813_1000003839 616
107 3300027866 Ga0209813_10000150 Ga0209813_100001505 616
108 3300050494 nmdc:mga06z11_206_c1 nmdc:mga06z11_206_c1_2014_4020 616
109 3300050494 nmdc:mga06z11_41_c1 nmdc:mga06z11_41_c1_35274_37367 616
110 3300050495 nmdc:mga04h51_115_c1 nmdc:mga04h51_115_c1_2014_4020 616
111 3300050495 nmdc:mga04h51_27_c1 nmdc:mga04h51_27_c1_15750_17843 616
112 3300010375 Ga0105239_10002622 Ga0105239_100026225 617
113 3300025913 Ga0207695_10005060 Ga0207695_1000506012 617
114 3300048924 Ga0496121_0006166 Ga0496121_0006166_9685_11724 617
115 3300025298 Ga0209050_1000636 Ga0209050_100063635 618
116 3300005262 Ga0065165_1000570 Ga0065165_100057051 619
117 3300046506 Ga0495583_0002920 Ga0495583_0002920_5910_8000 620
118 3300046520 Ga0495637_0000040 Ga0495637_0000040_108359_110449 620
119 3300046522 Ga0495643_0000037 Ga0495643_0000037_5915_8005 620
120 3300046558 Ga0495633_0032160 Ga0495633_0032160_401_2491 620
121 3300046692 Ga0495671_0000025 Ga0495671_0000025_229684_231774 620
122 3300049581 Ga0501047_0001385 Ga0501047_0001385_21425_23494 620
123 3300049823 Ga0501044_0000840 Ga0501044_0000840_10501_12528 620
124 3300025298 Ga0209050_1002934 Ga0209050_100293411 621
125 3300005355 Ga0070671_100002383 Ga0070671_1000023837 622
126 3300009093 Ga0105240_10048980 Ga0105240_100489802 622
127 3300009545 Ga0105237_10001890 Ga0105237_100018902 622
128 3300025913 Ga0207695_10036006 Ga0207695_100360062 622
129 3300025914 Ga0207671_10002051 Ga0207671_1000205113 622
130 3300025931 Ga0207644_10001613 Ga0207644_1000161311 622
131 3300046500 Ga0495596_0003762 Ga0495596_0003762_1911_3935 622
132 3300046512 Ga0495610_0004189 Ga0495610_0004189_4783_6807 622
133 3300046558 Ga0495633_0001103 Ga0495633_0001103_5408_7498 622
134 3300006353 Ga0075370_10007715 Ga0075370_100077152 623
135 3300031911 Ga0307412_10006826 Ga0307412_100068263 623
136 3300050496 nmdc:mga07m45_100_c1 nmdc:mga07m45_100_c1_21187_23262 623
137 iso_pu_bacteria 2928027323 2928030060 624
138 iso_pu_bacteria 2984555340 2984558934 624
139 iso_pu_bacteria 2993356040 2993357747 624
140 3300017792 Ga0163161_10064728 Ga0163161_100647282 625
141 3300002067 JGI24735J21928_10000404 JGI24735J21928_100004047 626
142 iso_pu_bacteria 2751185897 2753764574 626
143 3300009093 Ga0105240_10151195 Ga0105240_101511952 628
144 iso_pu_bacteria 2751185897 2753764821 628
145 iso_pu_bacteria 2818991438 2819554857 628
146 iso_pu_bacteria 8054302542 8054303180 628
147 3300046453 Ga0495627_002036 Ga0495627_002036_7172_9205 629
148 3300046512 Ga0495610_0004099 Ga0495610_0004099_7549_9582 629
149 3300046520 Ga0495637_0001712 Ga0495637_0001712_2956_4959 629
150 3300046522 Ga0495643_0000053 Ga0495643_0000053_37541_39544 629
151 3300046558 Ga0495633_0005124 Ga0495633_0005124_992_2995 629
152 3300046692 Ga0495671_0000031 Ga0495671_0000031_162487_164490 629
153 3300047470 Ga0495681_0000193 Ga0495681_0000193_4835_6868 629
154 3300047470 Ga0495681_0011193 Ga0495681_0011193_3005_5008 629
155 3300047472 Ga0495686_0004069 Ga0495686_0004069_8296_10329 629
156 iso_pu_bacteria 2919709256 2919712927 630
157 3300009545 Ga0105237_10105047 Ga0105237_101050472 631
158 3300053156 Ga0500622_0000861 Ga0500622_0000861_8531_10621 631
159 iso_pu_bacteria 2919138771 2919143354 631
160 3300047472 Ga0495686_0002233 Ga0495686_0002233_11869_13914 632
161 3300005353 Ga0070669_100003075 Ga0070669_1000030756 633
162 3300009011 Ga0105251_10001044 Ga0105251_1000104419 633
163 3300025735 Ga0207713_1005656 Ga0207713_10056563 633
164 3300048906 Ga0496103_0009216 Ga0496103_0009216_1771_3846 633
165 3300048920 Ga0496117_0004296 Ga0496117_0004296_7202_9277 633
166 3300048921 Ga0496118_0001955 Ga0496118_0001955_20960_23035 633
167 3300048927 Ga0496124_0001756 Ga0496124_0001756_7275_9350 633
168 3300048919 Ga0496116_0000189 Ga0496116_0000189_116205_118283 634
169 3300048921 Ga0496118_0002017 Ga0496118_0002017_1869_3947 634
170 3300048924 Ga0496121_0008035 Ga0496121_0008035_4196_6274 634
171 3300048927 Ga0496124_0008151 Ga0496124_0008151_6459_8537 634
172 3300053125 Ga0500618_002764 Ga0500618_002764_3908_6028 634
173 3300048927 Ga0496124_0033624 Ga0496124_0033624_736_2742 635
174 3300046512 Ga0495610_0000018 Ga0495610_0000018_235269_237407 636
175 3300053125 Ga0500618_000859 Ga0500618_000859_7924_10092 636
176 3300005983 Ga0081540_1023552 Ga0081540_10235523 640
177 3300009553 Ga0105249_10147658 Ga0105249_101476582 640
178 3300017792 Ga0163161_10034805 Ga0163161_100348052 640
179 3300048928 Ga0496125_0005943 Ga0496125_0005943_8910_10916 640
180 3300032004 Ga0307414_10095272 Ga0307414_100952722 644
181 3300001979 JGI24740J21852_10000078 JGI24740J21852_1000007821 646
182 3300001989 JGI24739J22299_10000377 JGI24739J22299_100003772 646
183 3300001990 JGI24737J22298_10007964 JGI24737J22298_100079642 646
184 3300002067 JGI24735J21928_10002969 JGI24735J21928_100029697 646
185 3300002067 JGI24735J21928_10004496 JGI24735J21928_100044962 646
186 3300002075 JGI24738J21930_10000001 JGI24738J21930_100000018 646
187 3300005563 Ga0068855_100021602 Ga0068855_1000216024 646
188 3300005578 Ga0068854_100005767 Ga0068854_1000057679 646
189 3300005616 Ga0068852_100129620 Ga0068852_1001296202 646
190 3300005834 Ga0068851_10000076 Ga0068851_1000007623 646
191 3300009093 Ga0105240_10021638 Ga0105240_100216382 646
192 3300010375 Ga0105239_10000476 Ga0105239_100004769 646
193 3300013102 Ga0157371_10000976 Ga0157371_1000097610 646
194 3300013104 Ga0157370_10000228 Ga0157370_100002289 646
195 3300013104 Ga0157370_10000344 Ga0157370_1000034417 646
196 3300013105 Ga0157369_10000336 Ga0157369_1000033658 646
197 3300013307 Ga0157372_10000507 Ga0157372_1000050734 646
198 3300025321 Ga0207656_10000127 Ga0207656_100001279 646
199 3300025904 Ga0207647_10020297 Ga0207647_100202972 646
200 3300025904 Ga0207647_10042069 Ga0207647_100420692 646
201 3300025913 Ga0207695_10066676 Ga0207695_100666762 646
202 3300025949 Ga0207667_10010931 Ga0207667_100109314 646
203 3300025981 Ga0207640_10004068 Ga0207640_100040682 646
204 3300031548 Ga0307408_100007977 Ga0307408_1000079772 646
205 3300031852 Ga0307410_10041288 Ga0307410_100412882 646
206 3300031901 Ga0307406_10033445 Ga0307406_100334452 646
207 3300032005 Ga0307411_10047368 Ga0307411_100473682 646

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10412

TrwB_AAD_bind

Type IV secretion-system coupling protein DNA-binding domain

172

547

0.99

PF12696

TraG-D_C

TraM recognition site of TraD and TraG

413

530

0.86

PF02534

T4SS-DNA_transf

Type IV secretory system Conjugative DNA transfer

144

544

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
1gl7-assembly1.cif.gz_F plasmid coupling protein trwb in complex with the non-hydrolisable atp-analogue adpnp. 0.6301 129 545
1gki-assembly1.cif.gz_G plasmid coupling protein trwb in complex with adp and mg2+. 0.6277 129 545
1gl6-assembly1.cif.gz_D plasmid coupling protein trwb in complex with the non-hydrolysable gtp analogue gdpnp 0.6238 129 545
1gl7-assembly1.cif.gz_E plasmid coupling protein trwb in complex with the non-hydrolisable atp-analogue adpnp. 0.6213 129 544
1gki-assembly1.cif.gz_B plasmid coupling protein trwb in complex with adp and mg2+. 0.6211 129 544
ID Description Score Start End Superfamily
af_Q9UTJ2_16_187_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.5564 390 447 3.40.50.1000
1e9sG01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.5239 129 545 3.40.50.300
af_Q642A0_14_110_1.10.287.370 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.5225 36 121 1.10.287.370
af_Q9SGR4_1_83_3.10.20.90 Alpha Beta;Roll;Ubiquitin-like (UB roll);Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.5124 63 117 3.10.20.90
af_Q13444_28_162_2.40.128.200 Mainly Beta;Beta Barrel;Lipocalin;C-type lysozyme inhibitor 0.51 70 93 2.40.128.200
ID Description Score Start End GO Terms
AF-K4WKN6-F1-model_v4 deleted 0.8898 317 442
AF-A0A4R6BZH2-F1-model_v4 Type IV conjugative transfer system coupling protein TraD 0.8735 316 441 GO:0005886
AF-A0A846L0Q8-F1-model_v4 Coupling protein TraD 0.8606 330 451 GO:0005886
AF-A0A6M1YNT0-F1-model_v4 Coupling protein TraD 0.8598 277 439 GO:0005886
AF-A0A378CQ23-F1-model_v4 Conjugal transfer protein TraD 0.8504 337 442 GO:0005886

Feature Viewer

pLDDT pTM Quality
59.67 0.55 Medium
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Predicted Structure (AlphaFold2)

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