F312890

General Info

Members Datasets Scaffolds Average Seq Length
204 145 408 148

Family's Representative Sequence

Representative Sequence 3300046459|Ga0495629_0475312|Ga0495629_0475312_222_743
Length 173
Sequence MPVGDRSAFGAAYAPTTSTRADEEEIVPVEGDYEASPWEWVKDQVETYERTGGREANTLRDTGLPIIVITTRGNKTGKVRKTPLMRVEHNGDYALVASMGGAPKNPVWYNNLTAHPDDVTLQDGEKPFEVNVRELSGDERVRWWERAVEAYPPYAEYQQNTERVIPVFLATRR

Samples

Sample ID Description Type Environment
1 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
47 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
48 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
69 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
70 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
71 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
72 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
73 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
74 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
78 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
79 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
80 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
81 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
82 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
83 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
84 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
85 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
86 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
87 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
92 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
93 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
94 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
95 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
96 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
97 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
98 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
99 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
100 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
101 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
102 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
103 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
104 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
105 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
106 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
107 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
108 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
109 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
110 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
111 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
112 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
113 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
114 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
115 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
116 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
117 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
118 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
119 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
120 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
121 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
122 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
123 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
124 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
125 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
126 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
127 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
134 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
135 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
136 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
137 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
138 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
139 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
140 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
141 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
142 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
143 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
144 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
145 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.02
Metatranscriptomes 0.98
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.27
Nodule 0
Rhizoplane 11.27
Rhizosphere 74.02
Stem 0
Stem Tuber 0
Unclassified 0.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495629_0475312 3300046459 Bacteria 845
2 Ga0070683_100046258 3300005329 Bacteria 4019
3 Ga0070683_100812027 3300005329 Bacteria 897
4 Ga0070683_101859447 3300005329 Bacteria 579
5 Ga0070682_100277060 3300005337 Bacteria 1221
6 Ga0070682_100294103 3300005337 Bacteria 1189
7 Ga0070682_101486101 3300005337 Bacteria 582
8 Ga0070668_101455944 3300005347 Bacteria 625
9 Ga0070675_100470697 3300005354 Bacteria 1129
10 Ga0070671_100563405 3300005355 Bacteria 983
11 Ga0070674_100543005 3300005356 Bacteria 974
12 Ga0070674_101560026 3300005356 Bacteria 595
13 Ga0070663_100342062 3300005455 Bacteria 1209
14 Ga0070678_101005522 3300005456 Bacteria 767
15 Ga0070685_10717932 3300005466 Bacteria 730
16 Ga0070706_100564677 3300005467 Bacteria 1058
17 Ga0068853_100928744 3300005539 Bacteria 836
18 Ga0070665_101064187 3300005548 Bacteria 821
19 Ga0068854_100594575 3300005578 Bacteria 944
20 Ga0068852_100087845 3300005616 Bacteria 2775
21 Ga0068864_100824239 3300005618 Bacteria 913
22 Ga0068866_10442216 3300005718 Bacteria 848
23 Ga0068861_100776664 3300005719 Bacteria 897
24 Ga0068858_100891401 3300005842 Bacteria 870
25 Ga0068858_101835897 3300005842 Bacteria 599
26 Ga0068860_100686994 3300005843 Bacteria 1033
27 Ga0070717_10144365 3300006028 Bacteria 2055
28 Ga0070717_11356485 3300006028 Bacteria 646
29 Ga0075365_10212538 3300006038 Bacteria 1356
30 Ga0075363_100100880 3300006048 Bacteria 1597
31 Ga0075363_100114158 3300006048 Bacteria 1504
32 Ga0075364_10011051 3300006051 Bacteria 5478
33 Ga0075364_10068823 3300006051 Bacteria 2328
34 Ga0075364_10119951 3300006051 Bacteria 1760
35 Ga0075362_10061450 3300006177 Bacteria 1700
36 Ga0075362_10197656 3300006177 Bacteria 978
37 Ga0075367_10026797 3300006178 Bacteria 3272
38 Ga0075367_10037599 3300006178 Bacteria 2813
39 Ga0075369_10249761 3300006186 Bacteria 824
40 Ga0075370_10060763 3300006353 Bacteria 2153
41 Ga0075370_10215821 3300006353 Bacteria 1133
42 Ga0075428_100790204 3300006844 Bacteria 1009
43 Ga0075435_100170135 3300007076 Bacteria 1838
44 Ga0105245_10053406 3300009098 Bacteria 3627
45 Ga0105245_11374290 3300009098 Bacteria 756
46 Ga0105245_12087730 3300009098 Bacteria 620
47 Ga0114129_10135976 3300009147 Bacteria 3372
48 Ga0105248_10632614 3300009177 Bacteria 1207
49 Ga0105249_10273812 3300009553 Bacteria 1683
50 Ga0105249_10593703 3300009553 Bacteria 1161
51 Ga0105239_10858659 3300010375 Bacteria 1041
52 Ga0105246_11438583 3300011119 Bacteria 645
53 Ga0163162_11810756 3300013306 Bacteria 698
54 Ga0157372_10711475 3300013307 Bacteria 1168
55 Ga0157375_10316458 3300013308 Bacteria 1725
56 Ga0157375_11523728 3300013308 Bacteria 789
57 Ga0163163_10734978 3300014325 Bacteria 1050
58 Ga0157380_10962255 3300014326 Bacteria 884
59 Ga0182008_10081700 3300014497 Bacteria 1591
60 Ga0157376_11548846 3300014969 Bacteria 696
61 Ga0163161_10054072 3300017792 Bacteria 2913
62 Ga0206350_10622648 3300020080 Bacteria 1052
63 Ga0213873_10172123 3300021358 Bacteria 661
64 Ga0213871_10089501 3300021441 Bacteria 891
65 Ga0207642_10334762 3300025899 Bacteria 888
66 Ga0207688_10061157 3300025901 Bacteria 2122
67 Ga0207684_10486984 3300025910 Bacteria 1058
68 Ga0207657_10793947 3300025919 Bacteria 732
69 Ga0207706_10110291 3300025933 Bacteria 2421
70 Ga0207709_10222083 3300025935 Bacteria 1363
71 Ga0207669_10506140 3300025937 Bacteria 967
72 Ga0207669_10813383 3300025937 Bacteria 776
73 Ga0207669_11869515 3300025937 Bacteria 513
74 Ga0207711_10450903 3300025941 Bacteria 1197
75 Ga0207661_10908952 3300025944 Bacteria 811
76 Ga0207712_10592768 3300025961 Bacteria 958
77 Ga0207668_11183168 3300025972 Bacteria 687
78 Ga0207703_11016037 3300026035 Bacteria 796
79 Ga0207639_10858650 3300026041 Bacteria 847
80 Ga0207708_10608469 3300026075 Bacteria 926
81 Ga0207648_10710473 3300026089 Bacteria 932
82 Ga0207648_10984745 3300026089 Bacteria 789
83 Ga0207675_100447061 3300026118 Bacteria 1280
84 Ga0207698_10558359 3300026142 Bacteria 1123
85 Ga0207698_10792075 3300026142 Bacteria 949
86 Ga0268264_10433599 3300028381 Bacteria 1270
87 Ga0265760_10095051 3300031090 Bacteria 937
88 Ga0307408_100625983 3300031548 Bacteria 959
89 Ga0316576_10076778 3300031727 Bacteria 2472
90 Ga0316576_10076899 3300031727 Bacteria 2470
91 Ga0316578_10013186 3300031728 Bacteria 4376
92 Ga0316578_10045744 3300031728 Bacteria 2549
93 Ga0316578_10095868 3300031728 Bacteria 1776
94 Ga0316577_10280035 3300031733 Bacteria 944
95 Ga0307410_10434071 3300031852 Bacteria 1068
96 Ga0307410_10580542 3300031852 Bacteria 933
97 Ga0307406_11348558 3300031901 Bacteria 624
98 Ga0307407_10302910 3300031903 Bacteria 1115
99 Ga0307412_10420002 3300031911 Bacteria 1094
100 Ga0307409_100622071 3300031995 Bacteria 1070
101 Ga0307409_100749070 3300031995 Bacteria 980
102 Ga0307416_100029020 3300032002 Bacteria 4126
103 Ga0307416_100069989 3300032002 Bacteria 2907
104 Ga0307416_101247617 3300032002 Bacteria 849
105 Ga0307416_101319573 3300032002 Bacteria 827
106 Ga0307414_11374898 3300032004 Bacteria 656
107 Ga0307411_10646838 3300032005 Bacteria 915
108 Ga0307411_10784144 3300032005 Bacteria 838
109 Ga0307415_100068767 3300032126 Bacteria 2480
110 Ga0307415_100229226 3300032126 Bacteria 1495
111 Ga0307415_100399417 3300032126 Bacteria 1173
112 Ga0307415_101411887 3300032126 Bacteria 663
113 Ga0373926_0000396 3300035083 Bacteria 11185
114 Ga0373946_0025392 3300035171 Bacteria 2329
115 Ga0373955_0418825 3300035172 Bacteria 815
116 Ga0316574_0300912 3300035398 Bacteria 1020
117 Ga0316574_0387902 3300035398 Bacteria 880
118 Ga0373935_0006287 3300035692 Bacteria 7075
119 Ga0373947_0000005 3300035725 Bacteria 225129
120 Ga0373937_0330772 3300036401 Bacteria 1442
121 Ga0316582_0001656 3300036647 Bacteria 9963
122 Ga0395900_0212466 3300037418 Bacteria 1953
123 Ga0395898_0093184 3300037466 Bacteria 2896
124 Ga0395898_0906511 3300037466 Bacteria 820
125 Ga0436365_1805547 3300039437 Bacteria 1700
126 Ga0436360_0728634 3300039438 Bacteria 3422
127 Ga0436362_0293659 3300039453 Bacteria 511
128 Ga0451793_0052310 3300041452 Bacteria 730
129 Ga0451793_0215295 3300041452 Bacteria 1387
130 Ga0451793_0353194 3300041452 Bacteria 4774
131 Ga0451797_0097455 3300041453 Bacteria 637
132 Ga0451797_0609718 3300041453 Bacteria 501
133 Ga0451795_0512753 3300041456 Bacteria 711
134 Ga0451800_0162064 3300041459 Bacteria 1202
135 Ga0451804_0921329 3300041463 Bacteria 610
136 Ga0451837_0229167 3300041494 Bacteria 785
137 Ga0451837_1591707 3300041494 Bacteria 894
138 Ga0451841_0396814 3300041498 Bacteria 787
139 Ga0451853_0682588 3300041512 Bacteria 2659
140 Ga0451853_1300348 3300041512 Bacteria 2338
141 Ga0451853_2313436 3300041512 Bacteria 668
142 Ga0466965_0789618 3300044683 Bacteria 549
143 Ga0466963_0043482 3300044694 Bacteria 2954
144 Ga0466964_0105089 3300044706 Bacteria 1251
145 Ga0466957_0390688 3300044842 Bacteria 950
146 Ga0466960_0048424 3300044901 Bacteria 2043
147 Ga0466960_0057455 3300044901 Bacteria 1897
148 Ga0466959_0137100 3300045049 Bacteria 1732
149 Ga0466958_0041763 3300045836 Bacteria 2760
150 Ga0466958_0106348 3300045836 Bacteria 1749
151 Ga0466967_0032479 3300045976 Bacteria 4408
152 Ga0466967_0067409 3300045976 Bacteria 3192
153 Ga0466967_0137147 3300045976 Bacteria 2276
154 Ga0466967_0670105 3300045976 Bacteria 1027
155 Ga0466967_1075470 3300045976 Bacteria 801
156 Ga0466967_1492544 3300045976 Bacteria 673
157 Ga0495664_0312472 3300046477 Bacteria 948
158 Ga0495628_0938587 3300046516 Bacteria 598
159 Ga0495630_0083191 3300046517 Bacteria 2416
160 Ga0495667_0130363 3300046559 Bacteria 1622
161 Ga0495635_0470052 3300046663 Bacteria 830
162 Ga0495657_0161546 3300046675 Bacteria 1386
163 Ga0495646_0468626 3300046680 Bacteria 649
164 Ga0495647_0075929 3300046681 Unclassified 1354
165 Ga0495613_0862352 3300046689 Bacteria 588
166 Ga0495604_0484395 3300047317 Bacteria 804
167 Ga0495680_0081833 3300047322 Bacteria 2437
168 Ga0496100_0388143 3300048903 Bacteria 1061
169 Ga0496101_0615825 3300048904 Bacteria 858
170 Ga0496103_0749023 3300048906 Bacteria 618
171 Ga0496105_0718284 3300048908 Bacteria 766
172 Ga0496108_0008603 3300048911 Bacteria 8276
173 Ga0496108_0465317 3300048911 Bacteria 1105
174 Ga0496109_0011725 3300048912 Bacteria 7541
175 Ga0496109_0257101 3300048912 Bacteria 1645
176 Ga0496109_1858104 3300048912 Bacteria 535
177 Ga0496110_0172385 3300048913 Bacteria 1963
178 Ga0496112_0002988 3300048915 Bacteria 13805
179 Ga0496114_0049545 3300048917 Bacteria 3495
180 Ga0496114_0249679 3300048917 Bacteria 1561
181 Ga0496114_0369722 3300048917 Bacteria 1269
182 Ga0496114_0490269 3300048917 Bacteria 1087
183 Ga0501031_0349828 3300049568 Bacteria 957
184 Ga0501041_0945946 3300049577 Bacteria 554
185 Ga0501042_0652801 3300049578 Bacteria 765
186 Ga0501048_0279428 3300049582 Bacteria 1187
187 Ga0501075_0304094 3300049591 Bacteria 1215
188 Ga0501045_0692914 3300049824 Bacteria 752
189 nmdc:mga03683_72988_c1 3300050489 Bacteria 1470
190 nmdc:mga03n38_206072_c1 3300050490 Bacteria 1020
191 nmdc:mga03n38_365652_c1 3300050490 Bacteria 788
192 nmdc:mga00v17_2736_c1 3300050491 Bacteria 9050
193 nmdc:mga00v17_314465_c1 3300050491 Bacteria 1018
194 nmdc:mga00v17_724446_c1 3300050491 Bacteria 637
195 nmdc:mga0yw44_104837_c1 3300050492 Bacteria 1805
196 nmdc:mga0yw44_5228_c1 3300050492 Bacteria 4586
197 nmdc:mga06z11_183590_c1 3300050494 Bacteria 1207
198 nmdc:mga06z11_258242_c1 3300050494 Bacteria 1027
199 nmdc:mga05p37_158256_c1 3300050507 Bacteria 2767
200 nmdc:mga0rr50_160021_c1 3300050513 Bacteria 1827
201 Ga0495601_0054910 3300053077 Bacteria 2521
202 Ga0495612_0051719 3300053078 Bacteria 1689
203 Ga0501084_1237850 3300054114 Bacteria 626
204 Ga0530510_0682174 3300061734 Bacteria 783
205 Ga0495629_0475312
206 Ga0070683_100046258
207 Ga0070683_100812027
208 Ga0070683_101859447
209 Ga0070682_100277060
210 Ga0070682_100294103
211 Ga0070682_101486101
212 Ga0070668_101455944
213 Ga0070675_100470697
214 Ga0070671_100563405
215 Ga0070674_100543005
216 Ga0070674_101560026
217 Ga0070663_100342062
218 Ga0070678_101005522
219 Ga0070685_10717932
220 Ga0070706_100564677
221 Ga0068853_100928744
222 Ga0070665_101064187
223 Ga0068854_100594575
224 Ga0068852_100087845
225 Ga0068864_100824239
226 Ga0068866_10442216
227 Ga0068861_100776664
228 Ga0068858_100891401
229 Ga0068858_101835897
230 Ga0068860_100686994
231 Ga0070717_10144365
232 Ga0070717_11356485
233 Ga0075365_10212538
234 Ga0075363_100100880
235 Ga0075363_100114158
236 Ga0075364_10011051
237 Ga0075364_10068823
238 Ga0075364_10119951
239 Ga0075362_10061450
240 Ga0075362_10197656
241 Ga0075367_10026797
242 Ga0075367_10037599
243 Ga0075369_10249761
244 Ga0075370_10060763
245 Ga0075370_10215821
246 Ga0075428_100790204
247 Ga0075435_100170135
248 Ga0105245_10053406
249 Ga0105245_11374290
250 Ga0105245_12087730
251 Ga0114129_10135976
252 Ga0105248_10632614
253 Ga0105249_10273812
254 Ga0105249_10593703
255 Ga0105239_10858659
256 Ga0105246_11438583
257 Ga0163162_11810756
258 Ga0157372_10711475
259 Ga0157375_10316458
260 Ga0157375_11523728
261 Ga0163163_10734978
262 Ga0157380_10962255
263 Ga0182008_10081700
264 Ga0157376_11548846
265 Ga0163161_10054072
266 Ga0206350_10622648
267 Ga0213873_10172123
268 Ga0213871_10089501
269 Ga0207642_10334762
270 Ga0207688_10061157
271 Ga0207684_10486984
272 Ga0207657_10793947
273 Ga0207706_10110291
274 Ga0207709_10222083
275 Ga0207669_10506140
276 Ga0207669_10813383
277 Ga0207669_11869515
278 Ga0207711_10450903
279 Ga0207661_10908952
280 Ga0207712_10592768
281 Ga0207668_11183168
282 Ga0207703_11016037
283 Ga0207639_10858650
284 Ga0207708_10608469
285 Ga0207648_10710473
286 Ga0207648_10984745
287 Ga0207675_100447061
288 Ga0207698_10558359
289 Ga0207698_10792075
290 Ga0268264_10433599
291 Ga0265760_10095051
292 Ga0307408_100625983
293 Ga0316576_10076778
294 Ga0316576_10076899
295 Ga0316578_10013186
296 Ga0316578_10045744
297 Ga0316578_10095868
298 Ga0316577_10280035
299 Ga0307410_10434071
300 Ga0307410_10580542
301 Ga0307406_11348558
302 Ga0307407_10302910
303 Ga0307412_10420002
304 Ga0307409_100622071
305 Ga0307409_100749070
306 Ga0307416_100029020
307 Ga0307416_100069989
308 Ga0307416_101247617
309 Ga0307416_101319573
310 Ga0307414_11374898
311 Ga0307411_10646838
312 Ga0307411_10784144
313 Ga0307415_100068767
314 Ga0307415_100229226
315 Ga0307415_100399417
316 Ga0307415_101411887
317 Ga0373926_0000396
318 Ga0373946_0025392
319 Ga0373955_0418825
320 Ga0316574_0300912
321 Ga0316574_0387902
322 Ga0373935_0006287
323 Ga0373947_0000005
324 Ga0373937_0330772
325 Ga0316582_0001656
326 Ga0395900_0212466
327 Ga0395898_0093184
328 Ga0395898_0906511
329 Ga0436365_1805547
330 Ga0436360_0728634
331 Ga0436362_0293659
332 Ga0451793_0052310
333 Ga0451793_0215295
334 Ga0451793_0353194
335 Ga0451797_0097455
336 Ga0451797_0609718
337 Ga0451795_0512753
338 Ga0451800_0162064
339 Ga0451804_0921329
340 Ga0451837_0229167
341 Ga0451837_1591707
342 Ga0451841_0396814
343 Ga0451853_0682588
344 Ga0451853_1300348
345 Ga0451853_2313436
346 Ga0466965_0789618
347 Ga0466963_0043482
348 Ga0466964_0105089
349 Ga0466957_0390688
350 Ga0466960_0048424
351 Ga0466960_0057455
352 Ga0466959_0137100
353 Ga0466958_0041763
354 Ga0466958_0106348
355 Ga0466967_0032479
356 Ga0466967_0067409
357 Ga0466967_0137147
358 Ga0466967_0670105
359 Ga0466967_1075470
360 Ga0466967_1492544
361 Ga0495664_0312472
362 Ga0495628_0938587
363 Ga0495630_0083191
364 Ga0495667_0130363
365 Ga0495635_0470052
366 Ga0495657_0161546
367 Ga0495646_0468626
368 Ga0495647_0075929
369 Ga0495613_0862352
370 Ga0495604_0484395
371 Ga0495680_0081833
372 Ga0496100_0388143
373 Ga0496101_0615825
374 Ga0496103_0749023
375 Ga0496105_0718284
376 Ga0496108_0008603
377 Ga0496108_0465317
378 Ga0496109_0011725
379 Ga0496109_0257101
380 Ga0496109_1858104
381 Ga0496110_0172385
382 Ga0496112_0002988
383 Ga0496114_0049545
384 Ga0496114_0249679
385 Ga0496114_0369722
386 Ga0496114_0490269
387 Ga0501031_0349828
388 Ga0501041_0945946
389 Ga0501042_0652801
390 Ga0501048_0279428
391 Ga0501075_0304094
392 Ga0501045_0692914
393 nmdc:mga03683_72988_c1
394 nmdc:mga03n38_206072_c1
395 nmdc:mga03n38_365652_c1
396 nmdc:mga00v17_2736_c1
397 nmdc:mga00v17_314465_c1
398 nmdc:mga00v17_724446_c1
399 nmdc:mga0yw44_104837_c1
400 nmdc:mga0yw44_5228_c1
401 nmdc:mga06z11_183590_c1
402 nmdc:mga06z11_258242_c1
403 nmdc:mga05p37_158256_c1
404 nmdc:mga0rr50_160021_c1
405 Ga0495601_0054910
406 Ga0495612_0051719
407 Ga0501084_1237850
408 Ga0530510_0682174

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04075

F420H2_quin_red

F420H(2)-dependent quinone reductase

40

172

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3r5y-assembly3.cif.gz_C structure of a deazaflavin-dependent nitroreductase from nocardia farcinica, with co-factor f420 0.982 4 146
3r5y-assembly3.cif.gz_C structure of a deazaflavin-dependent nitroreductase from nocardia farcinica, with co-factor f420 0.9751 4 146
3r5r-assembly2.cif.gz_B structure of ddn, the deazaflavin-dependent nitroreductase from mycobacterium tuberculosis involved in bioreductive activation of pa-824, with co-factor f420 0.9693 38 145
3r5r-assembly2.cif.gz_B structure of ddn, the deazaflavin-dependent nitroreductase from mycobacterium tuberculosis involved in bioreductive activation of pa-824, with co-factor f420 0.9522 38 145
4y9i-assembly1.cif.gz_A structure of f420-h2 dependent reductase (fdr-a) msmeg_2027 0.9439 39 144
ID Description Score Start End Superfamily
3r5yD00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.9701 3 146 2.30.110.10
3r5yD00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.9634 3 146 2.30.110.10
af_P9WP15_14_151_2.30.110.10 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.9519 14 145 2.30.110.10
4y9iA00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.9441 39 144 2.30.110.10
af_O53328_2_119_2.30.110.10 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.906 28 146 2.30.110.10
ID Description Score Start End GO Terms
AF-A0A4R7AU34-F1-model_v4 deleted 0.9904 3 147
AF-A0A024JYH7-F1-model_v4 Deazaflavin-dependent nitroreductase family protein 0.9903 38 147 GO:0005886
GO:0016491
GO:0070967
AF-A0A7I7LMA0-F1-model_v4 deleted 0.9902 36 147
AF-A0A6J7UX12-F1-model_v4 Unannotated protein 0.9876 1 147 GO:0005886
GO:0016491
GO:0070967
AF-A0A812Z6Z0-F1-model_v4 deleted 0.9873 1 146

Map