F310706

General Info

Members Datasets Scaffolds Average Seq Length
203 164 149 469

Family's Representative Sequence

Representative Sequence 3300005262|Ga0065165_1000019|Ga0065165_1000019207
Length 446
Sequence MYKCRIYQYFGVLGICLAVAACKVPAITPANENRSVPGSYGNNNADTTNTAAIQWRSFFTDKDLVNLIDTALKNNQELMITFQEIEIAKNDIRFKQAPLLPTVGARAGAGLEKVGRYTSQGAGDATTEIEPGKEMPDPLADYTVAIFANWEADIWKKLHNAKKAAVARYLSTVEGRNFVVTNLVAEVASSYYELLALDNQLAIVRQNIELQKNALEILQKIKETENRVNFLLGRYPQEIPRDKSSLLGLLPQAVYTGIPSQLLGNRPDIKQAELELSAAKLDVKVARAEFYPSFGISAAIGFQAFKPSYLFKTPESLLYSLAGDIAGPLINRNAIRAEFNSANARQLQAMYNYERTILNAYLEVATQLSNISNLEKSYDLKSKQVDALARSIDISNDLFKSARADYLEVLMTQRDALESRLELISTKKEQLIAVINIYKELGGGWK

Samples

Sample ID Description Type Environment
1 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
4 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
5 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
6 2738541278 Niastella sp. CF465 Isolate Unclassified
7 2738541283 Pedobacter sp. OK701 Isolate Unclassified
8 2738541284 Pedobacter sp. YR016 Isolate Unclassified
9 2738541302 Pedobacter sp. CF074 Isolate Unclassified
10 2738543023 Pedobacter sp. OK628 Isolate Unclassified
11 2739367651 Pedobacter sp. OK291 Isolate Unclassified
12 2739367656 Pedobacter sp. CF523 Isolate Unclassified
13 2739367663 Pedobacter sp. YR510 Isolate Unclassified
14 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
15 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
16 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
17 2818991437 Pedobacter terrae 518 Isolate Unclassified
18 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
19 2818991444 Filimonas endophytica 3197 Isolate Unclassified
20 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
21 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
22 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
23 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
24 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
25 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
26 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
27 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
28 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
29 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
30 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
31 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
32 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
33 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
34 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
35 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
36 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
37 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
38 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
39 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
40 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
41 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
42 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
43 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
44 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
45 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
46 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
47 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
48 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
49 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
50 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
51 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
52 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
53 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
54 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
55 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
56 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
57 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
58 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
59 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
60 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
61 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
62 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
63 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
64 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
65 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
66 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
67 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
68 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
69 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
70 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
71 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
72 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
73 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
74 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
75 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
76 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
77 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
78 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
79 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
80 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
81 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
82 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
83 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
84 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
85 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
86 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
87 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
88 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
89 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
92 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
94 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
95 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
97 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
98 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
99 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
101 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
102 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
113 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
114 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
115 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
116 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
117 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
118 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
119 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
120 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
121 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
122 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
123 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
124 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
125 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
126 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
127 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
128 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
129 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
130 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
131 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
132 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
133 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
134 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
135 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
136 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
137 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
138 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
139 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
140 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
141 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
146 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
147 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
148 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
149 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
151 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
152 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
153 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
154 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
155 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
156 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
157 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
158 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
159 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
160 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
161 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
162 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
163 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
164 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 71.92
Metatranscriptomes 1.48
Isolates 26.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.7
Nodule 0
Rhizoplane 0
Rhizosphere 57.14
Stem 0
Stem Tuber 0
Unclassified 23.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10000866 3300001989 Bacteria 11190
2 JGI25150J39212_1000001 3300002774 Bacteria 1318726
3 JGI25151J46595_10000001 3300003187 Bacteria 887211
4 JGI25153J46596_10000053 3300003215 Bacteria 138301
5 rootL2_10159481 3300003322 Bacteria 1720
6 rootL2_10250219 3300003322 Bacteria 1829
7 rootH1_10000662 3300003323 Bacteria 213765
8 rootH1_10089061 3300003323 Bacteria 21489
9 Ga0055535_1004962 3300003761 Bacteria 3054
10 Ga0055536_1000009 3300003781 Bacteria 311572
11 Ga0055528_1000895 3300003790 Bacteria 20118
12 Ga0055530_10005806 3300003791 Bacteria 5725
13 Ga0055531_10000320 3300003794 Bacteria 47187
14 Ga0055531_10000835 3300003794 Bacteria 25368
15 Ga0065165_1000019 3300005262 Bacteria 271815
16 Ga0065714_10064465 3300005288 Bacteria 65208
17 Ga0065704_10003908 3300005289 Bacteria 5744
18 Ga0065704_10112027 3300005289 Bacteria 1943
19 Ga0070670_100038761 3300005331 Bacteria 4097
20 Ga0070685_10003677 3300005466 Bacteria 7775
21 Ga0068861_100166201 3300005719 Bacteria 1824
22 Ga0068863_100060490 3300005841 Bacteria 3582
23 Ga0068863_100082939 3300005841 Bacteria 3037
24 Ga0097621_100135021 3300006237 Bacteria 2103
25 Ga0114129_10001241 3300009147 Bacteria 33950
26 Ga0105243_10000008 3300009148 Bacteria 390270
27 Ga0105242_10020676 3300009176 Bacteria 5163
28 Ga0105237_10001948 3300009545 Bacteria 26296
29 Ga0105249_10023142 3300009553 Bacteria 5572
30 Ga0105249_10045175 3300009553 Bacteria 4006
31 Ga0157373_10057254 3300013100 Bacteria 2765
32 Ga0157371_10000150 3300013102 Bacteria 101524
33 Ga0157371_10087352 3300013102 Bacteria 2208
34 Ga0157370_10000187 3300013104 Bacteria 77559
35 Ga0157370_10000929 3300013104 Bacteria 37165
36 Ga0157370_10001014 3300013104 Bacteria 35409
37 Ga0157370_10033843 3300013104 Bacteria 4981
38 Ga0163162_10000876 3300013306 Bacteria 28028
39 Ga0157372_10003725 3300013307 Bacteria 16374
40 Ga0157372_10042564 3300013307 Bacteria 5024
41 Ga0157372_10116698 3300013307 Bacteria 3061
42 Ga0157375_10097244 3300013308 Bacteria 3018
43 Ga0182008_10000058 3300014497 Bacteria 100175
44 Ga0182008_10001125 3300014497 Bacteria 18422
45 Ga0182006_1000442 3300015261 Bacteria 32856
46 Ga0182006_1002797 3300015261 Bacteria 9312
47 Ga0182006_1023824 3300015261 Bacteria 2532
48 Ga0182005_1000150 3300015265 Bacteria 48994
49 Ga0183373_1014 3300015682 Bacteria 95909
50 Ga0163161_10000979 3300017792 Bacteria 21853
51 Ga0163161_10039150 3300017792 Bacteria 3402
52 Ga0206351_10755650 3300020077 Bacteria 6203
53 Ga0206350_10048895 3300020080 Bacteria 7398
54 Ga0154015_1463703 3300020610 Bacteria 6717
55 Ga0209258_100193 3300025242 Bacteria 124682
56 Ga0207425_1000002 3300025245 Bacteria 1362590
57 Ga0209148_1000167 3300025254 Bacteria 135407
58 Ga0209129_1000002 3300025258 Bacteria 1359086
59 Ga0209673_1000042 3300025273 Bacteria 300704
60 Ga0209676_1000001 3300025292 Bacteria 1852142
61 Ga0209025_1000004 3300025294 Bacteria 1361782
62 Ga0209564_1001060 3300025295 Bacteria 33431
63 Ga0209758_1000006 3300025297 Bacteria 1359562
64 Ga0209758_1001582 3300025297 Bacteria 26029
65 Ga0209050_1000018 3300025298 Bacteria 723263
66 Ga0209050_1007346 3300025298 Bacteria 6200
67 Ga0207426_1000442 3300025302 Bacteria 66642
68 Ga0209257_1000077 3300025304 Bacteria 317964
69 Ga0209257_1000770 3300025304 Bacteria 47562
70 Ga0209257_1001427 3300025304 Bacteria 28371
71 Ga0207645_10022404 3300025907 Bacteria 4110
72 Ga0207671_10004116 3300025914 Bacteria 14061
73 Ga0207681_10031312 3300025923 Bacteria 3474
74 Ga0207686_10005984 3300025934 Bacteria 6530
75 Ga0207709_10000006 3300025935 Bacteria 800946
76 Ga0207670_10006836 3300025936 Bacteria 6346
77 Ga0207703_10018275 3300026035 Bacteria 5475
78 Ga0207641_10010956 3300026088 Bacteria 7430
79 Ga0207648_10037883 3300026089 Bacteria 4244
80 Ga0207675_100006617 3300026118 Bacteria 10961
81 Ga0207675_100074107 3300026118 Bacteria 3185
82 Ga0307515_10000010 3300028794 Bacteria 651586
83 Ga0316183_1037277 3300030742 Bacteria 60977
84 Ga0307408_100004624 3300031548 Bacteria 9305
85 Ga0307405_10000001 3300031731 Bacteria 1731270
86 Ga0307413_10000197 3300031824 Bacteria 17531
87 Ga0307413_10016943 3300031824 Bacteria 3783
88 Ga0307410_10000746 3300031852 Bacteria 13622
89 Ga0307406_10000055 3300031901 Bacteria 62544
90 Ga0307406_10002704 3300031901 Bacteria 9669
91 Ga0307407_10000013 3300031903 Bacteria 165614
92 Ga0307416_100000028 3300032002 Bacteria 165572
93 Ga0307416_100017802 3300032002 Bacteria 4984
94 Ga0307414_10000012 3300032004 Bacteria 322675
95 Ga0307414_10005239 3300032004 Bacteria 7125
96 Ga0307411_10000008 3300032005 Bacteria 321575
97 Ga0307415_100011770 3300032126 Bacteria 5025
98 Ga0307510_10084108 3300033180 Bacteria 3067
99 Ga0395900_0021993 3300037418 Bacteria 6521
100 Ga0395905_0001701 3300037471 Bacteria 25915
101 Ga0395905_0099097 3300037471 Bacteria 2737
102 Ga0439447_000205 3300041407 Bacteria 20789
103 Ga0439466_0000316 3300041411 Bacteria 18746
104 Ga0466972_0000068 3300044658 Bacteria 102183
105 Ga0466972_0000121 3300044658 Bacteria 66443
106 Ga0466972_0003916 3300044658 Bacteria 7421
107 Ga0451576_0000003 3300045051 Bacteria 1550573
108 Ga0495610_0000156 3300046512 Bacteria 76122
109 Ga0495610_0002666 3300046512 Bacteria 14716
110 Ga0495622_0042696 3300046557 Bacteria 2108
111 Ga0495668_0000526 3300046616 Bacteria 47711
112 Ga0495668_0009798 3300046616 Bacteria 5848
113 Ga0495668_0035659 3300046616 Bacteria 2788
114 Ga0495671_0017232 3300046692 Bacteria 3846
115 Ga0495686_0006700 3300047472 Bacteria 8763
116 Ga0496117_0000289 3300048920 Bacteria 90202
117 Ga0496121_0027044 3300048924 Bacteria 5381
118 Ga0496122_0000668 3300048925 Bacteria 69054
119 Ga0496122_0002303 3300048925 Bacteria 27558
120 Ga0496123_0000728 3300048926 Bacteria 53516
121 Ga0496123_0011321 3300048926 Bacteria 7747
122 Ga0496125_0016706 3300048928 Bacteria 7037
123 Ga0496125_0060865 3300048928 Bacteria 3032
124 Ga0501032_0003956 3300049569 Bacteria 11240
125 Ga0501034_0031377 3300049571 Bacteria 5397
126 Ga0501038_0042923 3300049574 Bacteria 3936
127 Ga0501047_0029465 3300049581 Bacteria 5292
128 Ga0501238_000025 3300049671 Bacteria 27389
129 Ga0501249_000020 3300049679 Bacteria 98438
130 Ga0501266_000004 3300049763 Bacteria 356286
131 Ga0501280_000328 3300049776 Bacteria 11911
132 Ga0501035_0061343 3300049822 Bacteria 3347
133 Ga0501044_0007510 3300049823 Bacteria 11994
134 Ga0501044_0034977 3300049823 Bacteria 5263
135 nmdc:mga05p37_5035_c1 3300050507 Bacteria 15481
136 Ga0500578_0000001 3300053086 Bacteria 317120
137 Ga0500646_0004125 3300053090 Bacteria 3688
138 Ga0500646_0005958 3300053090 Bacteria 3091
139 Ga0500583_0000460 3300053092 Bacteria 12732
140 Ga0500641_0000173 3300053096 Bacteria 24268
141 Ga0500641_0000240 3300053096 Bacteria 20703
142 Ga0500562_000038 3300053108 Bacteria 72186
143 Ga0500559_0043243 3300053136 Bacteria 1968
144 Ga0500589_060932 3300053147 Bacteria 1729
145 Ga0500616_0015283 3300053153 Bacteria 4393
146 Ga0500622_0000130 3300053156 Bacteria 79522
147 Ga0500622_0000340 3300053156 Bacteria 45986
148 Ga0500622_0002346 3300053156 Bacteria 13777
149 Ga0500627_0028752 3300053158 Bacteria 2312

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049823 Ga0501044_0007510 Ga0501044_0007510_5311_6678 405
2 3300053156 Ga0500622_0002346 Ga0500622_0002346_3231_4586 405
3 3300046616 Ga0495668_0035659 Ga0495668_0035659_71_1423 406
4 3300048925 Ga0496122_0000668 Ga0496122_0000668_40428_41759 410
5 3300048926 Ga0496123_0000728 Ga0496123_0000728_1040_2371 410
6 3300048928 Ga0496125_0016706 Ga0496125_0016706_4900_6231 410
7 3300050507 nmdc:mga05p37_5035_c1 nmdc:mga05p37_5035_c1_6130_7518 413
8 3300017792 Ga0163161_10039150 Ga0163161_100391502 419
9 3300053108 Ga0500562_000038 Ga0500562_000038_21530_22936 420
10 3300053086 Ga0500578_0000001 Ga0500578_0000001_97251_98615 421
11 3300015265 Ga0182005_1000150 Ga0182005_10001504 422
12 3300005466 Ga0070685_10003677 Ga0070685_100036773 424
13 3300005719 Ga0068861_100166201 Ga0068861_1001662012 424
14 3300013308 Ga0157375_10097244 Ga0157375_100972442 424
15 3300025936 Ga0207670_10006836 Ga0207670_100068363 424
16 3300026035 Ga0207703_10018275 Ga0207703_100182752 424
17 3300026118 Ga0207675_100074107 Ga0207675_1000741071 424
18 3300041411 Ga0439466_0000316 Ga0439466_0000316_5932_7365 425
19 3300053092 Ga0500583_0000460 Ga0500583_0000460_188_1621 425
20 3300053147 Ga0500589_060932 Ga0500589_060932_18_1451 425
21 3300009553 Ga0105249_10045175 Ga0105249_100451751 426
22 3300013307 Ga0157372_10042564 Ga0157372_100425642 426
23 3300053090 Ga0500646_0005958 Ga0500646_0005958_1696_3075 426
24 3300031824 Ga0307413_10016943 Ga0307413_100169431 427
25 3300032002 Ga0307416_100017802 Ga0307416_1000178022 427
26 3300032126 Ga0307415_100011770 Ga0307415_1000117703 427
27 3300044658 Ga0466972_0000121 Ga0466972_0000121_48873_50306 427
28 3300009147 Ga0114129_10001241 Ga0114129_1000124126 428
29 3300044658 Ga0466972_0003916 Ga0466972_0003916_400_1833 428
30 3300047472 Ga0495686_0006700 Ga0495686_0006700_2669_4054 428
31 3300031548 Ga0307408_100004624 Ga0307408_1000046247 429
32 3300031852 Ga0307410_10000746 Ga0307410_100007462 429
33 3300031901 Ga0307406_10000055 Ga0307406_100000557 429
34 3300032004 Ga0307414_10000012 Ga0307414_1000001261 429
35 3300046616 Ga0495668_0009798 Ga0495668_0009798_3652_5085 429
36 3300049671 Ga0501238_000025 Ga0501238_000025_21073_22506 429
37 3300049776 Ga0501280_000328 Ga0501280_000328_3361_4794 429
38 3300013307 Ga0157372_10003725 Ga0157372_100037254 430
39 3300013307 Ga0157372_10116698 Ga0157372_101166982 430
40 3300020077 Ga0206351_10755650 Ga0206351_107556504 430
41 3300020080 Ga0206350_10048895 Ga0206350_100488952 430
42 3300020610 Ga0154015_1463703 Ga0154015_14637032 430
43 3300033180 Ga0307510_10084108 Ga0307510_100841081 430
44 3300037418 Ga0395900_0021993 Ga0395900_0021993_624_2015 430
45 3300037471 Ga0395905_0001701 Ga0395905_0001701_13302_14693 430
46 3300037471 Ga0395905_0099097 Ga0395905_0099097_530_1921 430
47 3300049679 Ga0501249_000020 Ga0501249_000020_4866_6299 430
48 3300053096 Ga0500641_0000240 Ga0500641_0000240_12167_13600 430
49 3300046692 Ga0495671_0017232 Ga0495671_0017232_2330_3769 431
50 3300053090 Ga0500646_0004125 Ga0500646_0004125_2005_3444 431
51 3300053096 Ga0500641_0000173 Ga0500641_0000173_8448_9887 431
52 3300053156 Ga0500622_0000340 Ga0500622_0000340_26229_27662 431
53 3300005841 Ga0068863_100060490 Ga0068863_1000604902 432
54 3300026088 Ga0207641_10010956 Ga0207641_100109564 432
55 3300003794 Ga0055531_10000320 Ga0055531_1000032011 433
56 3300025304 Ga0209257_1000770 Ga0209257_100077010 433
57 3300053136 Ga0500559_0043243 Ga0500559_0043243_136_1554 433
58 3300031824 Ga0307413_10000197 Ga0307413_1000019710 434
59 3300032005 Ga0307411_10000008 Ga0307411_10000008102 434
60 3300041407 Ga0439447_000205 Ga0439447_000205_11726_13159 434
61 3300049763 Ga0501266_000004 Ga0501266_000004_149756_151189 434
62 iso_pu_bacteria 2840677318 2840678040 435
63 iso_pu_bacteria 2896085136 2896085857 435
64 iso_pu_bacteria 2929239360 2929245565 437
65 iso_pu_bacteria 2965320100 2965321342 437
66 iso_pu_bacteria 2884791551 2884798303 438
67 iso_pu_bacteria 2896109856 2896115269 438
68 iso_pu_bacteria 2513020052 2513234352 439
69 iso_pu_bacteria 2857613821 2857615922 439
70 iso_pu_bacteria 2904419702 2904422114 439
71 iso_pu_bacteria 2904555929 2904559046 439
72 3300046616 Ga0495668_0000526 Ga0495668_0000526_8072_9493 440
73 iso_pu_bacteria 2585427687 2586210859 440
74 iso_pu_bacteria 2738541278 2738729620 440
75 iso_pu_bacteria 2738541283 2738755864 440
76 iso_pu_bacteria 2738541284 2738760052 440
77 iso_pu_bacteria 2738541302 2738852897 440
78 iso_pu_bacteria 2738543023 2739300989 440
79 iso_pu_bacteria 2739367651 2739589024 440
80 iso_pu_bacteria 2739367656 2739617314 440
81 iso_pu_bacteria 2739367663 2739647648 440
82 iso_pu_bacteria 2739367857 2740002426 440
83 iso_pu_bacteria 2739367858 2740007242 440
84 iso_pu_bacteria 2775506987 2776612032 440
85 iso_pu_bacteria 2818991437 2819547908 440
86 iso_pu_bacteria 2818991442 2819573901 440
87 iso_pu_bacteria 2818991444 2819591042 440
88 iso_pu_bacteria 2821136567 2821137212 440
89 iso_pu_bacteria 2842722452 2842726454 440
90 iso_pu_bacteria 2842903701 2842905170 440
91 iso_pu_bacteria 2842909656 2842910705 440
92 iso_pu_bacteria 2849281842 2849284538 440
93 iso_pu_bacteria 2852623160 2852624854 440
94 iso_pu_bacteria 2852627209 2852630236 440
95 iso_pu_bacteria 2857618242 2857620329 440
96 iso_pu_bacteria 2904445276 2904445353 440
97 iso_pu_bacteria 2904467357 2904468046 440
98 iso_pu_bacteria 2929154850 2929156336 440
99 iso_pu_bacteria 2929177148 2929180649 440
100 iso_pu_bacteria 2945977869 2945983048 440
101 iso_pu_bacteria 2945997725 2946001040 440
102 iso_pu_bacteria 2946013367 2946017557 440
103 iso_pu_bacteria 2954016120 2954017908 440
104 iso_pu_bacteria 2977232053 2977236689 440
105 iso_pu_bacteria 8003151029 8003152768 440
106 iso_pu_bacteria 2643221600 2644009856 441
107 iso_pu_bacteria 2643221667 2644370784 441
108 iso_pu_bacteria 2721755487 2722728524 441
109 iso_pu_bacteria 2881359912 2881362696 441
110 iso_pu_bacteria 2904780799 2904784584 441
111 iso_pu_bacteria 2919177583 2919181209 441
112 iso_pu_bacteria 2919191525 2919192068 441
113 iso_pu_bacteria 2919683626 2919687078 441
114 iso_pu_bacteria 2929150217 2929154632 441
115 iso_pu_bacteria 8054307821 8054310581 441
116 iso_pu_bacteria 8056440228 8056440498 441
117 3300044658 Ga0466972_0000068 Ga0466972_0000068_93926_95356 442
118 3300046557 Ga0495622_0042696 Ga0495622_0042696_234_1661 442
119 3300005289 Ga0065704_10112027 Ga0065704_101120272 443
120 3300025907 Ga0207645_10022404 Ga0207645_100224042 443
121 3300026089 Ga0207648_10037883 Ga0207648_100378832 443
122 3300053153 Ga0500616_0015283 Ga0500616_0015283_400_1830 443
123 3300002774 JGI25150J39212_1000001 JGI25150J39212_1000001770 444
124 3300003187 JGI25151J46595_10000001 JGI25151J46595_1000000135 444
125 3300003215 JGI25153J46596_10000053 JGI25153J46596_1000005377 444
126 3300003322 rootL2_10250219 rootL2_102502191 444
127 3300003761 Ga0055535_1004962 Ga0055535_10049622 444
128 3300003781 Ga0055536_1000009 Ga0055536_100000954 444
129 3300003794 Ga0055531_10000835 Ga0055531_1000083518 444
130 3300005288 Ga0065714_10064465 Ga0065714_1006446519 444
131 3300005331 Ga0070670_100038761 Ga0070670_1000387612 444
132 3300005841 Ga0068863_100082939 Ga0068863_1000829392 444
133 3300006237 Ga0097621_100135021 Ga0097621_1001350212 444
134 3300009176 Ga0105242_10020676 Ga0105242_100206762 444
135 3300009545 Ga0105237_10001948 Ga0105237_1000194824 444
136 3300009553 Ga0105249_10023142 Ga0105249_100231424 444
137 3300013100 Ga0157373_10057254 Ga0157373_100572542 444
138 3300013102 Ga0157371_10000150 Ga0157371_1000015020 444
139 3300013104 Ga0157370_10000187 Ga0157370_1000018712 444
140 3300013104 Ga0157370_10000929 Ga0157370_100009293 444
141 3300013104 Ga0157370_10001014 Ga0157370_1000101434 444
142 3300013306 Ga0163162_10000876 Ga0163162_100008762 444
143 3300014497 Ga0182008_10000058 Ga0182008_1000005868 444
144 3300014497 Ga0182008_10001125 Ga0182008_1000112513 444
145 3300015261 Ga0182006_1000442 Ga0182006_100044216 444
146 3300015261 Ga0182006_1002797 Ga0182006_10027979 444
147 3300015261 Ga0182006_1023824 Ga0182006_10238242 444
148 3300015682 Ga0183373_1014 Ga0183373_101434 444
149 3300017792 Ga0163161_10000979 Ga0163161_100009799 444
150 3300025242 Ga0209258_100193 Ga0209258_10019359 444
151 3300025245 Ga0207425_1000002 Ga0207425_1000002408 444
152 3300025254 Ga0209148_1000167 Ga0209148_100016757 444
153 3300025258 Ga0209129_1000002 Ga0209129_1000002408 444
154 3300025292 Ga0209676_1000001 Ga0209676_10000011293 444
155 3300025294 Ga0209025_1000004 Ga0209025_1000004782 444
156 3300025297 Ga0209758_1000006 Ga0209758_1000006782 444
157 3300025298 Ga0209050_1000018 Ga0209050_1000018290 444
158 3300025304 Ga0209257_1000077 Ga0209257_1000077115 444
159 3300025914 Ga0207671_10004116 Ga0207671_1000411616 444
160 3300025923 Ga0207681_10031312 Ga0207681_100313122 444
161 3300025934 Ga0207686_10005984 Ga0207686_100059844 444
162 3300026118 Ga0207675_100006617 Ga0207675_1000066172 444
163 3300028794 Ga0307515_10000010 Ga0307515_1000001062 444
164 3300030742 Ga0316183_1037277 Ga0316183_103727732 444
165 3300031903 Ga0307407_10000013 Ga0307407_1000001334 444
166 3300032002 Ga0307416_100000028 Ga0307416_10000002834 444
167 3300032004 Ga0307414_10005239 Ga0307414_100052393 444
168 3300045051 Ga0451576_0000003 Ga0451576_0000003_343673_345112 444
169 3300046512 Ga0495610_0000156 Ga0495610_0000156_12511_13944 444
170 3300046512 Ga0495610_0002666 Ga0495610_0002666_4633_6066 444
171 3300049569 Ga0501032_0003956 Ga0501032_0003956_5247_6680 444
172 3300049571 Ga0501034_0031377 Ga0501034_0031377_1728_3161 444
173 3300049574 Ga0501038_0042923 Ga0501038_0042923_1983_3416 444
174 3300049581 Ga0501047_0029465 Ga0501047_0029465_2263_3696 444
175 3300049822 Ga0501035_0061343 Ga0501035_0061343_249_1682 444
176 3300049823 Ga0501044_0034977 Ga0501044_0034977_570_2003 444
177 3300053156 Ga0500622_0000130 Ga0500622_0000130_46269_47702 444
178 3300053158 Ga0500627_0028752 Ga0500627_0028752_761_2194 444
179 3300001989 JGI24739J22299_10000866 JGI24739J22299_100008663 445
180 3300003322 rootL2_10159481 rootL2_101594811 445
181 3300003323 rootH1_10000662 rootH1_100006629 445
182 3300003323 rootH1_10089061 rootH1_1008906116 445
183 3300003790 Ga0055528_1000895 Ga0055528_100089512 445
184 3300003791 Ga0055530_10005806 Ga0055530_100058063 445
185 3300005262 Ga0065165_1000019 Ga0065165_1000019207 445
186 3300005289 Ga0065704_10003908 Ga0065704_100039082 445
187 3300009148 Ga0105243_10000008 Ga0105243_10000008294 445
188 3300013102 Ga0157371_10087352 Ga0157371_100873522 445
189 3300013104 Ga0157370_10033843 Ga0157370_100338431 445
190 3300025273 Ga0209673_1000042 Ga0209673_1000042121 445
191 3300025295 Ga0209564_1001060 Ga0209564_100106027 445
192 3300025297 Ga0209758_1001582 Ga0209758_10015822 445
193 3300025298 Ga0209050_1007346 Ga0209050_10073462 445
194 3300025302 Ga0207426_1000442 Ga0207426_100044226 445
195 3300025304 Ga0209257_1001427 Ga0209257_100142713 445
196 3300025935 Ga0207709_10000006 Ga0207709_10000006184 445
197 3300031731 Ga0307405_10000001 Ga0307405_100000011633 445
198 3300031901 Ga0307406_10002704 Ga0307406_100027043 445
199 3300048920 Ga0496117_0000289 Ga0496117_0000289_47416_48855 445
200 3300048924 Ga0496121_0027044 Ga0496121_0027044_2561_4006 445
201 3300048925 Ga0496122_0002303 Ga0496122_0002303_5145_6584 445
202 3300048926 Ga0496123_0011321 Ga0496123_0011321_1079_2518 445
203 3300048928 Ga0496125_0060865 Ga0496125_0060865_1531_2970 445

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02321

OEP

Outer membrane efflux protein

64

226

0.96

PF02321

OEP

Outer membrane efflux protein

258

442

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
7akz-assembly1.cif.gz_A deciphering the role of the channel constrictions in the opening mechanism of mexab-oprm efflux pump from pseudomonas aeruginosa 0.7076 24 445
6zre-assembly2.cif.gz_B deciphering the role of the channel constrictions in the opening mechanism of mexab-oprm efflux pump from pseudomonas aeruginosa 0.7009 26 445
4mt0-assembly1.cif.gz_A crystal structure of the open state of the neisseria gonorrhoeae mtre outer membrane channel 0.7008 24 443
1wp1-assembly2.cif.gz_B crystal structure of the drug-discharge outer membrane protein, oprm 0.6985 24 444
5azs-assembly1.cif.gz_B crystal structure of a membrane protein from pseudomonas aeruginosa 0.6983 29 440
ID Description Score Start End Superfamily
4mt0A01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.7523 24 443 1.20.1600.10
1wp1B01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.7411 48 444 1.20.1600.10
4mt0A01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.734 24 443 1.20.1600.10
1yc9A01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.7325 55 444 1.20.1600.10
4k7rA01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.7323 47 443 1.20.1600.10
ID Description Score Start End GO Terms
AF-A0A519V8Q9-F1-model_v4 TolC family protein 0.8199 244 444 GO:0015562
AF-A0A4U6CZ04-F1-model_v4 TolC family protein 0.8093 271 445 GO:0015562
AF-A0A6L7JTN8-F1-model_v4 deleted 0.8032 181 445
AF-A0A4U6CZ04-F1-model_v4 TolC family protein 0.8013 271 445 GO:0015562
AF-A0A7Y8FUP3-F1-model_v4 TolC family protein 0.8009 267 445 GO:0009279
GO:0015562

Feature Viewer

pLDDT pTM Quality
67.97 0.61 Medium
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Predicted Structure (AlphaFold2)

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