F310569

General Info

Members Datasets Scaffolds Average Seq Length
202 149 405 298

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2875391855|2875391910
Length 330
Sequence PLDQVRTLLAVVDEGTFDAAASALRVTPSAVSQRVKALERRTGRVLLMRTKPVRPTESGEVVVRFARQLARLEQDAQSALGMSGPGEPTRLSIAVNSDSLATWFLPALGRVPEELGICYELRREDQDHTAALLREGLVMAAVTSSPEAVSGCSVRSLGRMRYLPVATAAFAERWLGRGTATPLRELIVDAPVVDFDRRDDIQASFTRALGCGRRAARRRHFVPTSEGFVDAVAAGMGWGMLPDVHARPLLDSGRLVVLAPDRHIDVPLYWQQWKLDSPALATVAEAVAAEAAEALGGGAGAGRIGGGRPEARAGRTGSGRPGTRAGRATP

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
5 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
6 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
7 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
8 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
9 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
10 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
11 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
12 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
13 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
14 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
15 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
16 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
17 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
18 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
19 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
20 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
21 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
22 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
23 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
24 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
25 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
26 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
27 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
28 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
29 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
30 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
31 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
32 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
33 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
34 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
35 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
36 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
37 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
38 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
39 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
40 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
41 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
42 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
43 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
44 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
45 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
46 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
47 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
48 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
49 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
50 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
51 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
52 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
53 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
54 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
55 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
56 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
57 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
58 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
59 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
60 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
61 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
62 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
63 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
64 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
65 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
66 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
67 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
68 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
69 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
70 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
71 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
72 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
73 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
74 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
75 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
76 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
77 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
78 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
79 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
94 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
95 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
96 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
97 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
98 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
102 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
103 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
104 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
105 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
106 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
107 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
108 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
109 2582580736 Prauserella sp. Am3 Isolate Unclassified
110 2643221647 Streptomyces sp. Root369 Isolate Unclassified
111 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
112 2643221714 Streptomyces sp. Root264 Isolate Unclassified
113 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
114 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
115 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
116 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
117 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
118 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
119 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
120 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
121 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
122 2867428634 Streptomyces sp. RP5T Isolate Unclassified
123 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
124 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
125 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
126 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
127 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
128 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
129 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
130 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
131 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
132 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
133 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
134 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
135 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
136 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
137 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
138 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
139 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
140 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
141 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
142 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
143 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
144 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
145 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
146 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
147 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
148 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
149 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.21
Metatranscriptomes 0
Isolates 20.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.97
Nodule 0
Rhizoplane 0
Rhizosphere 81.68
Stem 0
Stem Tuber 0.5
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10004682 3300003316 Bacteria 2226
2 rootH1_10004682 3300003323 Bacteria 6344
3 rootH1_10069912 3300003323 Bacteria 2454
4 Ga0070714_100052313 3300005435 Bacteria 3483
5 Ga0081539_10000301 3300005985 Bacteria 111476
6 Ga0183367_1003 3300015688 Bacteria 814276
7 Ga0207664_10113484 3300025929 Bacteria 2256
8 Ga0207709_10276685 3300025935 Bacteria 1238
9 Ga0307517_10001013 3300028786 Bacteria 47758
10 Ga0307515_10000106 3300028794 Bacteria 197218
11 Ga0307511_10006370 3300030521 Bacteria 11899
12 Ga0265328_10048311 3300031239 Bacteria 1564
13 Ga0307509_10021909 3300031507 Bacteria 7216
14 Ga0307509_10027112 3300031507 Bacteria 6378
15 Ga0307408_100078249 3300031548 Bacteria 2464
16 Ga0307508_10007132 3300031616 Bacteria 10410
17 Ga0307516_10002172 3300031730 Bacteria 26588
18 Ga0307416_100109550 3300032002 Bacteria 2429
19 Ga0307507_10009003 3300033179 Bacteria 13493
20 Ga0307507_10061776 3300033179 Bacteria 3486
21 Ga0307510_10013916 3300033180 Bacteria 9531
22 Ga0307510_10035711 3300033180 Bacteria 5545
23 Ga0307510_10126458 3300033180 Bacteria 2243
24 Ga0439436_0001442 3300041404 Bacteria 6891
25 Ga0451853_3644430 3300041512 Bacteria 4392
26 Ga0439442_016803 3300042002 Bacteria 1510
27 Ga0439449_0006053 3300042007 Bacteria 4623
28 Ga0439457_002448 3300042014 Bacteria 5300
29 Ga0439462_0017400 3300042015 Bacteria 1861
30 Ga0439462_0027445 3300042015 Bacteria 1503
31 Ga0450903_000092 3300042138 Bacteria 18774
32 Ga0466972_0015075 3300044658 Bacteria 3865
33 Ga0466972_0057952 3300044658 Bacteria 1860
34 Ga0466965_0029881 3300044683 Bacteria 2653
35 Ga0466965_0047920 3300044683 Bacteria 2116
36 Ga0466961_0125679 3300044693 Bacteria 1609
37 Ga0466971_0015503 3300044719 Bacteria 3356
38 Ga0466970_0007374 3300044765 Bacteria 5510
39 Ga0466960_0011336 3300044901 Bacteria 3726
40 Ga0466967_0250948 3300045976 Bacteria 1690
41 Ga0495592_0009327 3300046454 Bacteria 7381
42 Ga0495603_0003527 3300046455 Bacteria 9316
43 Ga0495629_0003309 3300046459 Bacteria 12174
44 Ga0495629_0004402 3300046459 Bacteria 10551
45 Ga0495651_0002054 3300046462 Bacteria 15554
46 Ga0495582_0007450 3300046473 Bacteria 6056
47 Ga0495662_0002176 3300046476 Bacteria 9851
48 Ga0495662_0023462 3300046476 Bacteria 2978
49 Ga0495664_0000080 3300046477 Bacteria 47313
50 Ga0495607_0051644 3300046501 Bacteria 2386
51 Ga0495606_0020097 3300046507 Bacteria 4937
52 Ga0495620_0008448 3300046515 Bacteria 5527
53 Ga0495628_0074540 3300046516 Bacteria 2643
54 Ga0495630_0205739 3300046517 Bacteria 1502
55 Ga0495631_0004028 3300046518 Bacteria 7906
56 Ga0495666_0031099 3300046526 Bacteria 2616
57 Ga0495666_0206296 3300046526 Bacteria 902
58 Ga0495652_0021833 3300046529 Bacteria 5690
59 Ga0495640_0080543 3300046533 Bacteria 2165
60 Ga0495586_0021624 3300046535 Bacteria 3431
61 Ga0495587_0000196 3300046536 Bacteria 44727
62 Ga0495609_0073054 3300046538 Bacteria 1505
63 Ga0495645_0152278 3300046543 Bacteria 1605
64 Ga0495668_0009508 3300046616 Bacteria 5964
65 Ga0495634_0038487 3300046642 Bacteria 3261
66 Ga0495634_0075742 3300046642 Bacteria 2209
67 Ga0495625_0011925 3300046660 Bacteria 7056
68 Ga0495625_0251018 3300046660 Bacteria 1148
69 Ga0495635_0003553 3300046663 Bacteria 10788
70 Ga0495635_0011973 3300046663 Bacteria 6077
71 Ga0495661_0131300 3300046665 Bacteria 1372
72 Ga0495588_0001670 3300046674 Bacteria 9458
73 Ga0495588_0004044 3300046674 Bacteria 6448
74 Ga0495657_0000646 3300046675 Bacteria 31644
75 Ga0495646_0033915 3300046680 Bacteria 3172
76 Ga0495613_0001691 3300046689 Bacteria 16812
77 Ga0495613_0043309 3300046689 Bacteria 3330
78 Ga0495613_0081521 3300046689 Bacteria 2350
79 Ga0495624_0050368 3300046690 Bacteria 2638
80 Ga0495624_0111952 3300046690 Bacteria 1678
81 Ga0495671_0004285 3300046692 Bacteria 8574
82 Ga0495589_0022892 3300046794 Bacteria 3185
83 Ga0495600_0002603 3300046809 Bacteria 10401
84 Ga0495600_0127876 3300046809 Bacteria 1652
85 Ga0495581_0006420 3300047315 Bacteria 6824
86 Ga0495581_0110422 3300047315 Bacteria 1599
87 Ga0495604_0003403 3300047317 Bacteria 12684
88 Ga0495604_0031127 3300047317 Bacteria 4234
89 Ga0495636_0002612 3300047318 Bacteria 6932
90 Ga0495676_0001567 3300047321 Bacteria 19835
91 Ga0495676_0070903 3300047321 Bacteria 2680
92 Ga0495676_0114061 3300047321 Bacteria 1977
93 Ga0495680_0006277 3300047322 Bacteria 11072
94 Ga0495687_003697 3300047443 Bacteria 10872
95 Ga0495675_0020570 3300047444 Bacteria 4199
96 Ga0495685_003298 3300047447 Bacteria 5140
97 Ga0495685_011180 3300047447 Bacteria 3024
98 Ga0495685_051627 3300047447 Bacteria 1394
99 Ga0495681_0026136 3300047470 Bacteria 3046
100 Ga0495681_0159064 3300047470 Bacteria 942
101 Ga0495686_0026487 3300047472 Bacteria 3792
102 Ga0495593_0001503 3300047673 Bacteria 13704
103 Ga0495593_0070228 3300047673 Bacteria 1820
104 Ga0495602_0144194 3300048088 Bacteria 1881
105 Ga0495614_0000107 3300048089 Bacteria 28466
106 Ga0495614_0076734 3300048089 Bacteria 1444
107 Ga0495626_0042719 3300048091 Bacteria 2129
108 Ga0501031_0002362 3300049568 Bacteria 11971
109 Ga0501031_0007109 3300049568 Bacteria 7304
110 Ga0501032_0000646 3300049569 Bacteria 28329
111 Ga0501032_0020994 3300049569 Bacteria 4543
112 Ga0501032_0115419 3300049569 Bacteria 1776
113 Ga0501033_0000856 3300049570 Bacteria 27837
114 Ga0501033_0009047 3300049570 Bacteria 7682
115 Ga0501033_0011650 3300049570 Bacteria 6724
116 Ga0501034_0011986 3300049571 Bacteria 8957
117 Ga0501034_0033313 3300049571 Bacteria 5228
118 Ga0501034_0052878 3300049571 Bacteria 4091
119 Ga0501034_0068170 3300049571 Bacteria 3569
120 Ga0501036_0005948 3300049572 Bacteria 9886
121 Ga0501037_0004990 3300049573 Bacteria 9647
122 Ga0501038_0002356 3300049574 Bacteria 17605
123 Ga0501038_0199768 3300049574 Bacteria 1605
124 Ga0501039_0009334 3300049575 Bacteria 7475
125 Ga0501039_0015599 3300049575 Bacteria 5814
126 Ga0501040_0259357 3300049576 Bacteria 1241
127 Ga0501042_0067586 3300049578 Bacteria 2555
128 Ga0501043_0001718 3300049579 Bacteria 18923
129 Ga0501043_0006854 3300049579 Bacteria 9094
130 Ga0501043_0016509 3300049579 Bacteria 5787
131 Ga0501046_0007936 3300049580 Bacteria 9289
132 Ga0501046_0026333 3300049580 Bacteria 4750
133 Ga0501047_0019869 3300049581 Bacteria 6448
134 Ga0501047_0074298 3300049581 Bacteria 3273
135 Ga0501047_0365861 3300049581 Bacteria 1277
136 Ga0501048_0012487 3300049582 Bacteria 6320
137 Ga0501048_0065019 3300049582 Bacteria 2579
138 Ga0501067_0032184 3300049583 Bacteria 2911
139 Ga0501069_0000192 3300049585 Bacteria 26931
140 Ga0501070_0000755 3300049586 Bacteria 29497
141 Ga0501070_0002594 3300049586 Bacteria 15789
142 Ga0501073_0016392 3300049589 Bacteria 5370
143 Ga0501074_0012826 3300049590 Bacteria 6093
144 Ga0501074_0023602 3300049590 Bacteria 4470
145 Ga0501080_0006812 3300049742 Bacteria 10302
146 Ga0501080_0117228 3300049742 Bacteria 2468
147 Ga0501035_0020353 3300049822 Bacteria 6092
148 Ga0501035_0028510 3300049822 Bacteria 5095
149 Ga0501035_0031914 3300049822 Bacteria 4796
150 Ga0501035_0262285 3300049822 Bacteria 1464
151 Ga0501044_0006930 3300049823 Bacteria 12475
152 Ga0501044_0037138 3300049823 Bacteria 5092
153 Ga0501044_0071249 3300049823 Bacteria 3534
154 Ga0501044_0102083 3300049823 Bacteria 2884
155 Ga0500640_004211 3300053095 Bacteria 5189
156 Ga0500553_056629 3300053101 Bacteria 1857
157 Ga0500560_001528 3300053107 Bacteria 4062
158 Ga0500572_005547 3300053111 Bacteria 2864
159 Ga0500573_0067780 3300053140 Bacteria 2039
160 Ga0500600_0070862 3300053149 Bacteria 1912
161 Ga0501084_0011585 3300054114 Bacteria 7298
162 2875391910 2875391855 Bacteria 7600475
163 2583149921 2582580736 Bacteria 5325865
164 2644265067 2643221647 Bacteria 10741251
165 2644441751 2643221678 Bacteria 9540101
166 2644630845 2643221714 Bacteria 9015452
167 2785346964 2784746763 Bacteria 9783172
168 2786667138 2786546132 Bacteria 10419719
169 2795781793 2795385470 Bacteria 8317180
170 2804843556 2802429296 Bacteria 7227771
171 2808846775 2808606359 Bacteria 9866990
172 2808917398 2808606375 Bacteria 9466072
173 2812361615 2811994879 Bacteria 9313447
174 2812477164 2811994917 Bacteria 7761064
175 2862297232 2862290372 Bacteria 7471434
176 2867433804 2867428634 Bacteria 9590268
177 2873152065 2873151551 Bacteria 8625867
178 2877684346 2877676314 Bacteria 9512378
179 2883822376 2883821847 Bacteria 5121194
180 2899376748 2899370129 Bacteria 6781179
181 2912723734 2912715099 Bacteria 9460473
182 2912726837 2912723979 Bacteria 8557534
183 2917743268 2917736166 Bacteria 9690793
184 2919473795 2919468124 Bacteria 9133025
185 2919715866 2919713450 Bacteria 7431245
186 2946064550 2946064051 Bacteria 8957905
187 2946072972 2946072368 Bacteria 8999607
188 2954389686 2954380949 Bacteria 10050426
189 2954682225 2954673503 Bacteria 9685905
190 2954690699 2954682443 Bacteria 9862841
191 2954701699 2954701450 Bacteria 10834262
192 2954719202 2954711539 Bacteria 10867210
193 2954729173 2954721474 Bacteria 10456478
194 2954732637 2954731030 Bacteria 10243860
195 2954748073 2954740390 Bacteria 10229294
196 2954751516 2954749733 Bacteria 10366972
197 2954767198 2954759201 Bacteria 9358192
198 3006393724 3006393351 Bacteria 6615579
199 3006492411 3006486233 Bacteria 8157040
200 8008581461 8008574985 Bacteria 7815457
201 8025418710 8025413630 Bacteria 7014048
202 8048414149 8048406513 Bacteria 8936924
203 8056835013 8056829672 Bacteria 9045328
204 rootH1_10004682
205 rootH1_10069912
206 Ga0070714_100052313
207 Ga0081539_10000301
208 Ga0183367_1003
209 Ga0207664_10113484
210 Ga0207709_10276685
211 Ga0307517_10001013
212 Ga0307515_10000106
213 Ga0307511_10006370
214 Ga0265328_10048311
215 Ga0307509_10021909
216 Ga0307509_10027112
217 Ga0307408_100078249
218 Ga0307508_10007132
219 Ga0307516_10002172
220 Ga0307416_100109550
221 Ga0307507_10009003
222 Ga0307507_10061776
223 Ga0307510_10013916
224 Ga0307510_10035711
225 Ga0307510_10126458
226 Ga0439436_0001442
227 Ga0451853_3644430
228 Ga0439442_016803
229 Ga0439449_0006053
230 Ga0439457_002448
231 Ga0439462_0017400
232 Ga0439462_0027445
233 Ga0450903_000092
234 Ga0466972_0015075
235 Ga0466972_0057952
236 Ga0466965_0029881
237 Ga0466965_0047920
238 Ga0466961_0125679
239 Ga0466971_0015503
240 Ga0466970_0007374
241 Ga0466960_0011336
242 Ga0466967_0250948
243 Ga0495592_0009327
244 Ga0495603_0003527
245 Ga0495629_0003309
246 Ga0495629_0004402
247 Ga0495651_0002054
248 Ga0495582_0007450
249 Ga0495662_0002176
250 Ga0495662_0023462
251 Ga0495664_0000080
252 Ga0495607_0051644
253 Ga0495606_0020097
254 Ga0495620_0008448
255 Ga0495628_0074540
256 Ga0495630_0205739
257 Ga0495631_0004028
258 Ga0495666_0031099
259 Ga0495666_0206296
260 Ga0495652_0021833
261 Ga0495640_0080543
262 Ga0495586_0021624
263 Ga0495587_0000196
264 Ga0495609_0073054
265 Ga0495645_0152278
266 Ga0495668_0009508
267 Ga0495634_0038487
268 Ga0495634_0075742
269 Ga0495625_0011925
270 Ga0495625_0251018
271 Ga0495635_0003553
272 Ga0495635_0011973
273 Ga0495661_0131300
274 Ga0495588_0001670
275 Ga0495588_0004044
276 Ga0495657_0000646
277 Ga0495646_0033915
278 Ga0495613_0001691
279 Ga0495613_0043309
280 Ga0495613_0081521
281 Ga0495624_0050368
282 Ga0495624_0111952
283 Ga0495671_0004285
284 Ga0495589_0022892
285 Ga0495600_0002603
286 Ga0495600_0127876
287 Ga0495581_0006420
288 Ga0495581_0110422
289 Ga0495604_0003403
290 Ga0495604_0031127
291 Ga0495636_0002612
292 Ga0495676_0001567
293 Ga0495676_0070903
294 Ga0495676_0114061
295 Ga0495680_0006277
296 Ga0495687_003697
297 Ga0495675_0020570
298 Ga0495685_003298
299 Ga0495685_011180
300 Ga0495685_051627
301 Ga0495681_0026136
302 Ga0495681_0159064
303 Ga0495686_0026487
304 Ga0495593_0001503
305 Ga0495593_0070228
306 Ga0495602_0144194
307 Ga0495614_0000107
308 Ga0495614_0076734
309 Ga0495626_0042719
310 Ga0501031_0002362
311 Ga0501031_0007109
312 Ga0501032_0000646
313 Ga0501032_0020994
314 Ga0501032_0115419
315 Ga0501033_0000856
316 Ga0501033_0009047
317 Ga0501033_0011650
318 Ga0501034_0011986
319 Ga0501034_0033313
320 Ga0501034_0052878
321 Ga0501034_0068170
322 Ga0501036_0005948
323 Ga0501037_0004990
324 Ga0501038_0002356
325 Ga0501038_0199768
326 Ga0501039_0009334
327 Ga0501039_0015599
328 Ga0501040_0259357
329 Ga0501042_0067586
330 Ga0501043_0001718
331 Ga0501043_0006854
332 Ga0501043_0016509
333 Ga0501046_0007936
334 Ga0501046_0026333
335 Ga0501047_0019869
336 Ga0501047_0074298
337 Ga0501047_0365861
338 Ga0501048_0012487
339 Ga0501048_0065019
340 Ga0501067_0032184
341 Ga0501069_0000192
342 Ga0501070_0000755
343 Ga0501070_0002594
344 Ga0501073_0016392
345 Ga0501074_0012826
346 Ga0501074_0023602
347 Ga0501080_0006812
348 Ga0501080_0117228
349 Ga0501035_0020353
350 Ga0501035_0028510
351 Ga0501035_0031914
352 Ga0501035_0262285
353 Ga0501044_0006930
354 Ga0501044_0037138
355 Ga0501044_0071249
356 Ga0501044_0102083
357 Ga0500640_004211
358 Ga0500553_056629
359 Ga0500560_001528
360 Ga0500572_005547
361 Ga0500573_0067780
362 Ga0500600_0070862
363 Ga0501084_0011585
364 2875391910
365 2583149921
366 2644265067
367 2644441751
368 2644630845
369 2785346964
370 2786667138
371 2795781793
372 2804843556
373 2808846775
374 2808917398
375 2812361615
376 2812477164
377 2862297232
378 2867433804
379 2873152065
380 2877684346
381 2883822376
382 2899376748
383 2912723734
384 2912726837
385 2917743268
386 2919473795
387 2919715866
388 2946064550
389 2946072972
390 2954389686
391 2954682225
392 2954690699
393 2954701699
394 2954719202
395 2954729173
396 2954732637
397 2954748073
398 2954751516
399 2954767198
400 3006393724
401 3006492411
402 8008581461
403 8025418710
404 8048414149
405 8056835013

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

2

60

0.98

PF03466

LysR_substrate

LysR substrate binding domain

85

292

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
7trv-assembly1.cif.gz_B crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.9129 3 87
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.8951 5 87
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.8866 1 88
7trv-assembly1.cif.gz_B crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.8832 3 87
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.8686 1 88
ID Description Score Start End Superfamily
af_P9WMF5_6_80_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9918 5 78 1.10.10.10
af_P67662_3_85_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9706 6 85 1.10.10.10
af_P9WMF5_6_80_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9659 5 78 1.10.10.10
3ispA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9551 4 85 1.10.10.10
3ispB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9449 6 73 1.10.10.10
ID Description Score Start End GO Terms
AF-F3ZJR5-F1-model_v4 Putative chromosome replication initiation inhibitor protein 0.9606 2 92 GO:0003700
AF-F3ZJR5-F1-model_v4 Putative chromosome replication initiation inhibitor protein 0.8836 2 92 GO:0003700
AF-A0A655A4N6-F1-model_v4 LysR family transcriptional regulator 0.8612 139 273 GO:0003700
AF-A0A2S4M373-F1-model_v4 ArgP family transcriptional regulator 0.8489 140 272 GO:0003700
AF-A0A7C6RHW2-F1-model_v4 ArgP/LysG family DNA-binding transcriptional regulator 0.8082 5 131 GO:0003677
GO:0003700

Map