F310560

General Info

Members Datasets Scaffolds Average Seq Length
202 154 404 385

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2775506925|2776374642
Length 421
Sequence TGFEVHDTPKRCGGSTKFGGIADNLRLMRVLHTSDWHVGRTFHGRDLLGDQEAVLGGLADLVAEEQVDVVVIAGDLYDRAVPSGEAVQTCVRVLARIREAGAQLVVTSGNHDSAARVGAFAEFAAAGGLHLRTQIARLHEPVLIDDRHGPVAFYGIPYLEPDPARHALQACAEVAGASPEIESRGHTAVLTEAMNRVRAELAERPQRTRSVVLAHAFVTGGDSSDSERTIAVGGVEQVPGSVFDGVDYVALGHLHGPQRLAEHLRYSGSPLAYSFSEAAHRKSVWLVELDADGLAGVERRELPVPRRLAAVQGLLEDLLTQPEHADLEDCYLSATLTDEVRPLEAMRRLQQRFPHAVHLEWKPATGRATAPLRYAEIVRGRDDHALTATFVADCRGAEPNESERALLDEALRAVAATEGTR

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
7 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
8 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
9 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
10 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
11 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
12 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
13 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
14 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
15 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
16 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
17 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
18 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
19 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
20 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
21 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
22 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
23 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
24 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
25 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
26 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
27 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
28 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
29 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
30 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
31 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
32 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
33 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
34 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
35 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
36 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
37 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
38 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
39 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
40 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
41 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
42 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
43 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
44 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
45 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
46 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
47 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
48 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
49 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
50 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
51 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
52 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
53 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
54 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
55 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
56 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
57 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
58 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
59 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
60 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
61 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
62 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
63 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
64 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
65 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
66 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
67 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
68 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
69 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
70 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
71 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
72 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
73 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
74 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
75 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
76 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
77 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
78 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
79 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
80 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
81 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
82 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
97 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
98 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
99 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
100 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
101 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
102 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
103 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
104 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
105 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
106 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
107 2643221578 Streptomyces sp. Root63 Isolate Unclassified
108 2643221670 Streptomyces sp. Root431 Isolate Unclassified
109 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
110 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
111 2643221692 Nocardia sp. Root136 Isolate Unclassified
112 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
113 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
114 2808606448 Streptomyces sp. 193411 Isolate Unclassified
115 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
116 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
117 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
118 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
119 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
120 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
121 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
122 2867428634 Streptomyces sp. RP5T Isolate Unclassified
123 2867475112 Streptomyces sp. TM32 Isolate Unclassified
124 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
125 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
126 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
127 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
128 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
129 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
130 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
131 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
132 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
133 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
134 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
135 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
136 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
137 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
138 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
139 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
140 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
141 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
142 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
143 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
144 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
145 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
146 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
147 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
148 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
149 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
150 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
151 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
152 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere
153 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
154 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.27
Metatranscriptomes 0
Isolates 26.73

Biome Distribution

Category Percentage (%)
Aerial Root 0.5
Bulb 0
Endosphere 3.96
Nodule 0
Rhizoplane 1.49
Rhizosphere 73.27
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10000697 3300003203 Bacteria 15666
2 rootH2_10013453 3300003320 Bacteria 3763
3 Ga0068868_100156924 3300005338 Bacteria 1877
4 Ga0070668_100005531 3300005347 Bacteria 9372
5 Ga0081539_10000882 3300005985 Bacteria 57376
6 Ga0182008_10001124 3300014497 Bacteria 18422
7 Ga0213875_10001028 3300021388 Bacteria 19813
8 Ga0209758_1009858 3300025297 Bacteria 5835
9 Ga0207426_1000625 3300025302 Bacteria 44906
10 Ga0207426_1002290 3300025302 Bacteria 12623
11 Ga0207426_1011113 3300025302 Bacteria 3452
12 Ga0207678_10001916 3300026067 Bacteria 19013
13 Ga0209813_10000889 3300027866 Bacteria 6737
14 Ga0307517_10001079 3300028786 Bacteria 46190
15 Ga0307515_10007045 3300028794 Bacteria 22336
16 Ga0307515_10012622 3300028794 Bacteria 15875
17 Ga0307511_10000093 3300030521 Bacteria 76097
18 Ga0307512_10005074 3300030522 Bacteria 13990
19 Ga0307509_10001522 3300031507 Bacteria 39131
20 Ga0307509_10009628 3300031507 Bacteria 12016
21 Ga0307508_10041598 3300031616 Bacteria 4123
22 Ga0307508_10041919 3300031616 Bacteria 4108
23 Ga0307514_10060272 3300031649 Bacteria 2896
24 Ga0307516_10035319 3300031730 Bacteria 5016
25 Ga0307516_10063810 3300031730 Bacteria 3565
26 Ga0307413_10001116 3300031824 Bacteria 9827
27 Ga0307416_100095623 3300032002 Bacteria 2566
28 Ga0307507_10008305 3300033179 Bacteria 14457
29 Ga0307507_10016947 3300033179 Bacteria 8419
30 Ga0307507_10033831 3300033179 Bacteria 5297
31 Ga0307510_10006535 3300033180 Bacteria 13904
32 Ga0307510_10019089 3300033180 Bacteria 8043
33 Ga0395898_0017764 3300037466 Bacteria 7258
34 Ga0436364_0368011 3300037853 Bacteria 29861
35 Ga0436364_0557155 3300037853 Bacteria 9042
36 Ga0395901_0421472 3300038443 Bacteria 1369
37 Ga0439449_0006333 3300042007 Bacteria 4522
38 Ga0466966_0259274 3300044684 Bacteria 1047
39 Ga0466963_0005423 3300044694 Bacteria 7468
40 Ga0466970_0023838 3300044765 Bacteria 3199
41 Ga0466960_0024592 3300044901 Bacteria 2719
42 Ga0495592_0018976 3300046454 Bacteria 5234
43 Ga0495592_0020682 3300046454 Bacteria 5007
44 Ga0495592_0116667 3300046454 Bacteria 1883
45 Ga0495603_0011560 3300046455 Bacteria 5341
46 Ga0495603_0017559 3300046455 Bacteria 4331
47 Ga0495629_0061023 3300046459 Bacteria 2635
48 Ga0495629_0181976 3300046459 Bacteria 1456
49 Ga0495629_0219536 3300046459 Bacteria 1311
50 Ga0495638_0054951 3300046460 Bacteria 2474
51 Ga0495651_0022751 3300046462 Bacteria 4872
52 Ga0495651_0105925 3300046462 Bacteria 2085
53 Ga0495653_0263124 3300046463 Bacteria 1139
54 Ga0495605_0042900 3300046474 Bacteria 2245
55 Ga0495639_0018378 3300046475 Bacteria 3043
56 Ga0495662_0013192 3300046476 Bacteria 4023
57 Ga0495662_0084540 3300046476 Bacteria 1544
58 Ga0495662_0086186 3300046476 Bacteria 1529
59 Ga0495664_0000666 3300046477 Bacteria 17447
60 Ga0495596_0006497 3300046500 Bacteria 5369
61 Ga0495608_0058068 3300046511 Bacteria 2552
62 Ga0495616_0067900 3300046513 Bacteria 1732
63 Ga0495628_0043366 3300046516 Bacteria 3584
64 Ga0495628_0066758 3300046516 Bacteria 2811
65 Ga0495628_0126083 3300046516 Bacteria 1961
66 Ga0495630_0223376 3300046517 Bacteria 1438
67 Ga0495631_0066417 3300046518 Bacteria 1560
68 Ga0495643_0001250 3300046522 Bacteria 24372
69 Ga0495666_0103100 3300046526 Bacteria 1343
70 Ga0495652_0069640 3300046529 Bacteria 2944
71 Ga0495652_0078980 3300046529 Bacteria 2722
72 Ga0495640_0000322 3300046533 Bacteria 33172
73 Ga0495640_0040685 3300046533 Bacteria 3253
74 Ga0495640_0095628 3300046533 Bacteria 1955
75 Ga0495587_0010660 3300046536 Bacteria 5838
76 Ga0495609_0014070 3300046538 Bacteria 3768
77 Ga0495633_0089794 3300046558 Bacteria 1428
78 Ga0495667_0111395 3300046559 Bacteria 1768
79 Ga0495625_0018043 3300046660 Bacteria 5515
80 Ga0495625_0102976 3300046660 Bacteria 1958
81 Ga0495635_0007329 3300046663 Bacteria 7699
82 Ga0495635_0091813 3300046663 Bacteria 2076
83 Ga0495661_0029461 3300046665 Bacteria 3503
84 Ga0495661_0115707 3300046665 Bacteria 1489
85 Ga0495588_0012146 3300046674 Bacteria 4060
86 Ga0495588_0044374 3300046674 Bacteria 2277
87 Ga0495657_0010020 3300046675 Bacteria 7149
88 Ga0495657_0012747 3300046675 Bacteria 6233
89 Ga0495657_0145834 3300046675 Bacteria 1472
90 Ga0495646_0002552 3300046680 Bacteria 11184
91 Ga0495613_0011871 3300046689 Bacteria 6474
92 Ga0495613_0016065 3300046689 Bacteria 5573
93 Ga0495613_0070007 3300046689 Bacteria 2557
94 Ga0495613_0085445 3300046689 Bacteria 2289
95 Ga0495613_0132917 3300046689 Bacteria 1781
96 Ga0495613_0179092 3300046689 Bacteria 1501
97 Ga0495671_0003301 3300046692 Bacteria 9973
98 Ga0495649_0011767 3300046694 Bacteria 5120
99 Ga0495649_0030439 3300046694 Bacteria 2981
100 Ga0495589_0027063 3300046794 Bacteria 2901
101 Ga0495600_0030587 3300046809 Bacteria 3487
102 Ga0495660_0079783 3300046810 Bacteria 1718
103 Ga0495581_0014781 3300047315 Bacteria 4528
104 Ga0495581_0060695 3300047315 Bacteria 2185
105 Ga0495604_0001061 3300047317 Bacteria 22794
106 Ga0495604_0021846 3300047317 Bacteria 5109
107 Ga0495636_0015753 3300047318 Bacteria 3014
108 Ga0495636_0019862 3300047318 Bacteria 2703
109 Ga0495676_0002975 3300047321 Bacteria 15321
110 Ga0495676_0019488 3300047321 Bacteria 5965
111 Ga0495680_0070795 3300047322 Bacteria 2657
112 Ga0495683_0084418 3300047323 Bacteria 1545
113 Ga0495687_001199 3300047443 Bacteria 24824
114 Ga0495675_0040760 3300047444 Bacteria 2960
115 Ga0495685_011977 3300047447 Bacteria 2933
116 Ga0495685_016707 3300047447 Bacteria 2508
117 Ga0495685_038017 3300047447 Bacteria 1649
118 Ga0495685_049802 3300047447 Bacteria 1422
119 Ga0495681_0000921 3300047470 Bacteria 22666
120 Ga0495686_0105345 3300047472 Bacteria 1697
121 Ga0495593_0002030 3300047673 Bacteria 12080
122 Ga0495593_0008340 3300047673 Bacteria 6030
123 Ga0495602_0019678 3300048088 Bacteria 6693
124 Ga0495602_0128831 3300048088 Bacteria 2022
125 Ga0495614_0009066 3300048089 Bacteria 4409
126 Ga0495626_0007402 3300048091 Bacteria 6115
127 Ga0496108_0031527 3300048911 Bacteria 4399
128 Ga0496109_0091705 3300048912 Bacteria 2810
129 Ga0501032_0102332 3300049569 Bacteria 1898
130 Ga0501033_0046974 3300049570 Bacteria 3210
131 Ga0501034_0225389 3300049571 Bacteria 1825
132 Ga0501036_0000983 3300049572 Bacteria 21518
133 Ga0501039_0001579 3300049575 Bacteria 16768
134 Ga0501043_0004392 3300049579 Bacteria 11460
135 Ga0501043_0233077 3300049579 Bacteria 1421
136 Ga0501047_0083547 3300049581 Bacteria 3069
137 Ga0501070_0000195 3300049586 Bacteria 56683
138 Ga0501074_0046136 3300049590 Bacteria 3150
139 Ga0501035_0003960 3300049822 Bacteria 14121
140 Ga0501035_0026021 3300049822 Bacteria 5359
141 Ga0501044_0002020 3300049823 Bacteria 23403
142 Ga0501044_0004753 3300049823 Bacteria 15189
143 Ga0501044_0050007 3300049823 Bacteria 4315
144 Ga0501045_0166949 3300049824 Bacteria 1639
145 nmdc:mga04h51_9736_c1 3300050495 Bacteria 2616
146 Ga0495619_0233535 3300053085 Bacteria 1274
147 Ga0500553_039487 3300053101 Bacteria 2320
148 Ga0500634_0125744 3300053161 Bacteria 1240
149 2776374642 2775506925 Bacteria 7237746
150 2547409163 2547132111 Bacteria 8013147
151 2552110426 2551306166 Bacteria 9731570
152 2585309737 2582581313 Bacteria 10042643
153 2585315967 2582581314 Bacteria 11452267
154 2616692969 2616644814 Bacteria 11555299
155 2643905142 2643221578 Bacteria 9213798
156 2644386017 2643221670 Bacteria 6497041
157 2644403200 2643221673 Bacteria 9196637
158 2644430075 2643221677 Bacteria 7584031
159 2644513757 2643221692 Bacteria 7282860
160 2744958694 2744054611 Bacteria 5611514
161 2804843538 2802429296 Bacteria 7227771
162 2809230074 2808606448 Bacteria 8656184
163 2811846785 2808606982 Bacteria 7791042
164 2819699356 2818991463 Bacteria 7948711
165 2862296571 2862290372 Bacteria 7471434
166 2862706031 2862705112 Bacteria 6563286
167 2863068957 2863067949 Bacteria 8541735
168 2866553024 2866552031 Bacteria 5824618
169 2867346521 2867346516 Bacteria 7608576
170 2867431942 2867428634 Bacteria 9590268
171 2867479176 2867475112 Bacteria 6909112
172 2873158161 2873151551 Bacteria 8625867
173 2875392508 2875391855 Bacteria 7600475
174 2912758564 2912757875 Bacteria 7940295
175 2917740044 2917736166 Bacteria 9690793
176 2918502311 2918501144 Bacteria 8668083
177 2935394095 2935390628 Bacteria 7043367
178 2946052226 2946045630 Bacteria 8527308
179 2966604612 2966598605 Bacteria 7676064
180 2974318276 2974315732 Bacteria 4602776
181 2984526486 2984523437 Bacteria 4508481
182 2990045731 2990044586 Bacteria 6603797
183 2997452711 2997451912 Bacteria 8492419
184 2997603328 2997600082 Bacteria 9896405
185 3006430763 3006425503 Bacteria 6491253
186 3006486926 3006486233 Bacteria 8157040
187 8003315737 8003314358 Bacteria 10575343
188 8023631333 8023623736 Bacteria 8593882
189 8025418691 8025413630 Bacteria 7014048
190 8025481535 8025478263 Bacteria 8209203
191 8025526238 8025524527 Bacteria 7197316
192 8033686890 8033684223 Bacteria 6906479
193 8047715164 8047710418 Bacteria 11023148
194 8047894499 8047893842 Bacteria 11723082
195 8048134834 8048127548 Bacteria 11053136
196 8048364553 8048356638 Bacteria 11044339
197 8048371516 8048369669 Bacteria 11666822
198 8048380450 8048379754 Bacteria 11877923
199 8054164294 8054160619 Bacteria 7783213
200 8056215290 8056207758 Bacteria 8639239
201 8056451707 8056447290 Bacteria 7680491
202 8056670273 8056667051 Bacteria 6953971
203 JGI25406J46586_10000697
204 rootH2_10013453
205 Ga0068868_100156924
206 Ga0070668_100005531
207 Ga0081539_10000882
208 Ga0182008_10001124
209 Ga0213875_10001028
210 Ga0209758_1009858
211 Ga0207426_1000625
212 Ga0207426_1002290
213 Ga0207426_1011113
214 Ga0207678_10001916
215 Ga0209813_10000889
216 Ga0307517_10001079
217 Ga0307515_10007045
218 Ga0307515_10012622
219 Ga0307511_10000093
220 Ga0307512_10005074
221 Ga0307509_10001522
222 Ga0307509_10009628
223 Ga0307508_10041598
224 Ga0307508_10041919
225 Ga0307514_10060272
226 Ga0307516_10035319
227 Ga0307516_10063810
228 Ga0307413_10001116
229 Ga0307416_100095623
230 Ga0307507_10008305
231 Ga0307507_10016947
232 Ga0307507_10033831
233 Ga0307510_10006535
234 Ga0307510_10019089
235 Ga0395898_0017764
236 Ga0436364_0368011
237 Ga0436364_0557155
238 Ga0395901_0421472
239 Ga0439449_0006333
240 Ga0466966_0259274
241 Ga0466963_0005423
242 Ga0466970_0023838
243 Ga0466960_0024592
244 Ga0495592_0018976
245 Ga0495592_0020682
246 Ga0495592_0116667
247 Ga0495603_0011560
248 Ga0495603_0017559
249 Ga0495629_0061023
250 Ga0495629_0181976
251 Ga0495629_0219536
252 Ga0495638_0054951
253 Ga0495651_0022751
254 Ga0495651_0105925
255 Ga0495653_0263124
256 Ga0495605_0042900
257 Ga0495639_0018378
258 Ga0495662_0013192
259 Ga0495662_0084540
260 Ga0495662_0086186
261 Ga0495664_0000666
262 Ga0495596_0006497
263 Ga0495608_0058068
264 Ga0495616_0067900
265 Ga0495628_0043366
266 Ga0495628_0066758
267 Ga0495628_0126083
268 Ga0495630_0223376
269 Ga0495631_0066417
270 Ga0495643_0001250
271 Ga0495666_0103100
272 Ga0495652_0069640
273 Ga0495652_0078980
274 Ga0495640_0000322
275 Ga0495640_0040685
276 Ga0495640_0095628
277 Ga0495587_0010660
278 Ga0495609_0014070
279 Ga0495633_0089794
280 Ga0495667_0111395
281 Ga0495625_0018043
282 Ga0495625_0102976
283 Ga0495635_0007329
284 Ga0495635_0091813
285 Ga0495661_0029461
286 Ga0495661_0115707
287 Ga0495588_0012146
288 Ga0495588_0044374
289 Ga0495657_0010020
290 Ga0495657_0012747
291 Ga0495657_0145834
292 Ga0495646_0002552
293 Ga0495613_0011871
294 Ga0495613_0016065
295 Ga0495613_0070007
296 Ga0495613_0085445
297 Ga0495613_0132917
298 Ga0495613_0179092
299 Ga0495671_0003301
300 Ga0495649_0011767
301 Ga0495649_0030439
302 Ga0495589_0027063
303 Ga0495600_0030587
304 Ga0495660_0079783
305 Ga0495581_0014781
306 Ga0495581_0060695
307 Ga0495604_0001061
308 Ga0495604_0021846
309 Ga0495636_0015753
310 Ga0495636_0019862
311 Ga0495676_0002975
312 Ga0495676_0019488
313 Ga0495680_0070795
314 Ga0495683_0084418
315 Ga0495687_001199
316 Ga0495675_0040760
317 Ga0495685_011977
318 Ga0495685_016707
319 Ga0495685_038017
320 Ga0495685_049802
321 Ga0495681_0000921
322 Ga0495686_0105345
323 Ga0495593_0002030
324 Ga0495593_0008340
325 Ga0495602_0019678
326 Ga0495602_0128831
327 Ga0495614_0009066
328 Ga0495626_0007402
329 Ga0496108_0031527
330 Ga0496109_0091705
331 Ga0501032_0102332
332 Ga0501033_0046974
333 Ga0501034_0225389
334 Ga0501036_0000983
335 Ga0501039_0001579
336 Ga0501043_0004392
337 Ga0501043_0233077
338 Ga0501047_0083547
339 Ga0501070_0000195
340 Ga0501074_0046136
341 Ga0501035_0003960
342 Ga0501035_0026021
343 Ga0501044_0002020
344 Ga0501044_0004753
345 Ga0501044_0050007
346 Ga0501045_0166949
347 nmdc:mga04h51_9736_c1
348 Ga0495619_0233535
349 Ga0500553_039487
350 Ga0500634_0125744
351 2776374642
352 2547409163
353 2552110426
354 2585309737
355 2585315967
356 2616692969
357 2643905142
358 2644386017
359 2644403200
360 2644430075
361 2644513757
362 2744958694
363 2804843538
364 2809230074
365 2811846785
366 2819699356
367 2862296571
368 2862706031
369 2863068957
370 2866553024
371 2867346521
372 2867431942
373 2867479176
374 2873158161
375 2875392508
376 2912758564
377 2917740044
378 2918502311
379 2935394095
380 2946052226
381 2966604612
382 2974318276
383 2984526486
384 2990045731
385 2997452711
386 2997603328
387 3006430763
388 3006486926
389 8003315737
390 8023631333
391 8025418691
392 8025481535
393 8025526238
394 8033686890
395 8047715164
396 8047894499
397 8048134834
398 8048364553
399 8048371516
400 8048380450
401 8054164294
402 8056215290
403 8056451707
404 8056670273

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12320

SbcD_C

Type 5 capsule protein repressor C-terminal domain

304

393

0.79

PF00149

Metallophos

Calcineurin-like phosphoesterase

28

257

0.61

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dog-assembly1.cif.gz_B crystal structure of a nuclease and capping domain of sbcd from staphylococcus aureus 0.901 1 323
7dog-assembly1.cif.gz_B crystal structure of a nuclease and capping domain of sbcd from staphylococcus aureus 0.8957 1 323
4lu9-assembly1.cif.gz_C crystal structure of e.coli sbcd at 2.5 angstrom resolution 0.8299 1 323
4lty-assembly3.cif.gz_A crystal structure of e.coli sbcd at 1.8 a resolution 0.822 1 324
3thn-assembly1.cif.gz_A-2 crystal structure of mre11 core with manganese 0.8175 1 322
ID Description Score Start End Superfamily
af_Q2FYT4_1_259_3.60.21.10 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.8909 1 265 3.60.21.10
af_Q2FYT4_1_259_3.60.21.10 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.8844 1 265 3.60.21.10
4m0vA01 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.8252 1 265 3.60.21.10
2q8uA01 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.8015 1 261 3.60.21.10
4m0vA01 Alpha Beta;4-Layer Sandwich;Purple Acid Phosphatase; chain A, domain 2;Metallo-dependent phosphatases 0.7999 1 265 3.60.21.10
ID Description Score Start End GO Terms
AF-A0A7K3SHQ0-F1-model_v4 Nuclease SbcCD subunit D 0.9852 1 91 GO:0004519
GO:0006260
GO:0006310
GO:0008408
AF-A0A3C1PLY1-F1-model_v4 Nuclease SbcCD subunit D 0.9728 3 90 GO:0004519
GO:0006260
GO:0006310
GO:0008408
AF-A0A7H4MEC5-F1-model_v4 Nuclease SbcCD subunit D 0.9662 1 84 GO:0004519
GO:0006260
GO:0006310
GO:0008408
AF-A0A7K3SHQ0-F1-model_v4 Nuclease SbcCD subunit D 0.9642 1 91 GO:0004519
GO:0006260
GO:0006310
GO:0008408
AF-A0A259NPM4-F1-model_v4 Nuclease SbcCD subunit D 0.9568 1 91 GO:0004519
GO:0006260
GO:0006310
GO:0008408

Map