F309346

General Info

Members Datasets Scaffolds Average Seq Length
202 136 404 337

Family's Representative Sequence

Representative Sequence 3300005329|Ga0070683_100000134|Ga0070683_10000013430
Length 368
Sequence MSTLLCFVPNGKAHARMLQYGIPTAMPKALITGITGQDGSYLAEFLHAKGYEIHGLKRRASSFNTDRVDHLYEDTHNSGAKFFLHYADLTDAGSLAYPLAEIRPDEIYNLGAQSHVRVSFDIPEYTSDTVAMGTVRLLEAIRRVNLKCRFYQASSSEMFGSTPPPQSENTLFHPRSPYACAKVYAHQITVNYRESYGMHACCGILFNHESPRRGETFVTRKITMGVARIKLGLQDKLYLGNLDARRDWGFAGDYVRAMWSMLQQDQPDDYVIGTGEAHSVREFVEAAFSHAGLDWQDHVRIDSRYFRPAEVDNLCADITKARTILGWEPRVGFQELVRMMVDADVADLRRKLKGGAAALRPVSETQGN

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
29 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
32 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
72 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
73 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
74 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
75 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
76 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
77 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
78 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
79 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
80 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
81 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
82 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
83 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
84 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
85 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
86 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
87 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
88 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
89 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
90 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
91 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
92 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
93 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
96 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
97 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
98 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
99 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
100 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
101 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
102 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
103 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
104 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
105 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
106 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
107 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
108 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
109 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
110 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
111 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
112 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
113 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
114 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
115 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
116 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
117 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
118 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
119 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
120 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
121 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
122 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
123 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
127 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
133 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
134 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
135 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
136 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.99
Nodule 0
Rhizoplane 0
Rhizosphere 96.53
Stem 0
Stem Tuber 0
Unclassified 0.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100000134 3300005329 Bacteria 47958
2 rootL2_10071120 3300003322 Bacteria 7551
3 Ga0070683_100272427 3300005329 Bacteria 1610
4 Ga0070680_100018833 3300005336 Bacteria 5461
5 Ga0070661_100030959 3300005344 Bacteria 3867
6 Ga0070661_100097796 3300005344 Bacteria 2180
7 Ga0070659_100006327 3300005366 Bacteria 8550
8 Ga0070659_100229125 3300005366 Bacteria 1535
9 Ga0070714_100403080 3300005435 Bacteria 1293
10 Ga0070713_100027822 3300005436 Bacteria 4458
11 Ga0070713_100171445 3300005436 Bacteria 1944
12 Ga0070705_100029183 3300005440 Bacteria 3030
13 Ga0070708_100298227 3300005445 Bacteria 1517
14 Ga0070662_100075092 3300005457 Bacteria 2503
15 Ga0070706_100009319 3300005467 Bacteria 9148
16 Ga0070706_100016493 3300005467 Bacteria 6826
17 Ga0070706_100029666 3300005467 Bacteria 5039
18 Ga0070706_100072181 3300005467 Bacteria 3194
19 Ga0070707_100015654 3300005468 Bacteria 7119
20 Ga0070707_100080996 3300005468 Bacteria 3134
21 Ga0070707_100130848 3300005468 Bacteria 2440
22 Ga0070707_100202575 3300005468 Bacteria 1934
23 Ga0070698_100001352 3300005471 Bacteria 27269
24 Ga0070698_100115922 3300005471 Bacteria 2643
25 Ga0070698_100158232 3300005471 Bacteria 2210
26 Ga0070699_100219605 3300005518 Bacteria 1694
27 Ga0070679_100015154 3300005530 Bacteria 7407
28 Ga0070679_100028361 3300005530 Bacteria 5519
29 Ga0070684_100093666 3300005535 Bacteria 2674
30 Ga0070684_100358107 3300005535 Bacteria 1343
31 Ga0070697_100016778 3300005536 Bacteria 5760
32 Ga0070697_100304458 3300005536 Bacteria 1370
33 Ga0068853_100064872 3300005539 Bacteria 3168
34 Ga0068853_100083214 3300005539 Bacteria 2804
35 Ga0070686_100007709 3300005544 Bacteria 6017
36 Ga0070686_100256459 3300005544 Bacteria 1280
37 Ga0070664_100013967 3300005564 Bacteria 6547
38 Ga0068857_100002813 3300005577 Bacteria 14316
39 Ga0068857_100094887 3300005577 Bacteria 2671
40 Ga0068854_100147436 3300005578 Bacteria 1812
41 Ga0068856_100017726 3300005614 Bacteria 6906
42 Ga0068864_100213884 3300005618 Bacteria 1776
43 Ga0068863_100000651 3300005841 Bacteria 35181
44 Ga0068858_100038248 3300005842 Unclassified 4450
45 Ga0081455_10083846 3300005937 Bacteria 2603
46 Ga0081538_10003396 3300005981 Bacteria 15070
47 Ga0070716_100050548 3300006173 Bacteria 2360
48 Ga0075428_100042880 3300006844 Bacteria 4975
49 Ga0075430_100006741 3300006846 Bacteria 9685
50 Ga0075431_100002720 3300006847 Bacteria 17160
51 Ga0075434_100140540 3300006871 Bacteria 2434
52 Ga0105240_10434533 3300009093 Bacteria 1472
53 Ga0111539_10106675 3300009094 Bacteria 3286
54 Ga0105245_10029656 3300009098 Bacteria 4836
55 Ga0114129_10097459 3300009147 Bacteria 4071
56 Ga0114129_10264840 3300009147 Bacteria 2302
57 Ga0105241_10003290 3300009174 Bacteria 12024
58 Ga0105241_10261689 3300009174 Bacteria 1470
59 Ga0105242_10026309 3300009176 Bacteria 4611
60 Ga0105242_10030740 3300009176 Bacteria 4289
61 Ga0105237_10306548 3300009545 Bacteria 1591
62 Ga0105237_10315035 3300009545 Bacteria 1568
63 Ga0105238_10015531 3300009551 Bacteria 7710
64 Ga0105246_10204094 3300011119 Bacteria 1539
65 Ga0157369_10016126 3300013105 Bacteria 8409
66 Ga0157374_10000043 3300013296 Bacteria 145109
67 Ga0157374_10000075 3300013296 Bacteria 99227
68 Ga0157374_10009596 3300013296 Bacteria 8313
69 Ga0157378_10000065 3300013297 Bacteria 93440
70 Ga0157378_10030851 3300013297 Bacteria 4733
71 Ga0157372_10000474 3300013307 Bacteria 44360
72 Ga0157372_10169037 3300013307 Bacteria 2529
73 Ga0163163_10031080 3300014325 Bacteria 5151
74 Ga0163163_10077347 3300014325 Bacteria 3323
75 Ga0157380_10021973 3300014326 Bacteria 4793
76 Ga0157376_10003156 3300014969 Bacteria 11322
77 Ga0157376_10136370 3300014969 Bacteria 2196
78 Ga0207705_10084904 3300025909 Bacteria 2312
79 Ga0207684_10005708 3300025910 Bacteria 11430
80 Ga0207684_10123045 3300025910 Bacteria 2225
81 Ga0207684_10294385 3300025910 Bacteria 1399
82 Ga0207707_10025784 3300025912 Bacteria 5141
83 Ga0207707_10300824 3300025912 Bacteria 1387
84 Ga0207695_10003054 3300025913 Bacteria 23987
85 Ga0207695_10003851 3300025913 Bacteria 20770
86 Ga0207660_10009954 3300025917 Bacteria 6159
87 Ga0207657_10021460 3300025919 Bacteria 6075
88 Ga0207649_10080602 3300025920 Bacteria 2106
89 Ga0207649_10170540 3300025920 Bacteria 1515
90 Ga0207652_10012815 3300025921 Bacteria 6780
91 Ga0207652_10059633 3300025921 Bacteria 3290
92 Ga0207646_10017055 3300025922 Bacteria 6806
93 Ga0207646_10038407 3300025922 Bacteria 4313
94 Ga0207646_10052903 3300025922 Bacteria 3633
95 Ga0207646_10074901 3300025922 Bacteria 3024
96 Ga0207646_10216674 3300025922 Bacteria 1729
97 Ga0207694_10020656 3300025924 Bacteria 4985
98 Ga0207694_10053746 3300025924 Bacteria 3124
99 Ga0207650_10062062 3300025925 Bacteria 2791
100 Ga0207700_10020784 3300025928 Bacteria 4468
101 Ga0207690_10146826 3300025932 Bacteria 1744
102 Ga0207661_10006411 3300025944 Bacteria 8324
103 Ga0207667_10003972 3300025949 Bacteria 18169
104 Ga0207703_10107651 3300026035 Bacteria 2373
105 Ga0207639_10202206 3300026041 Bacteria 1704
106 Ga0207702_10232514 3300026078 Bacteria 1723
107 Ga0207641_10002128 3300026088 Bacteria 18724
108 Ga0207674_10000019 3300026116 Bacteria 167439
109 Ga0207698_10051257 3300026142 Bacteria 3154
110 Ga0207698_10137746 3300026142 Bacteria 2097
111 Ga0207428_10010060 3300027907 Bacteria 8466
112 Ga0265337_1010410 3300028556 Bacteria 3259
113 Ga0265334_10020474 3300028573 Bacteria 2708
114 Ga0265318_10000011 3300028577 Bacteria 231078
115 Ga0265338_10004298 3300028800 Bacteria 19338
116 Ga0265330_10000019 3300031235 Bacteria 156905
117 Ga0265332_10005534 3300031238 Bacteria 5821
118 Ga0265328_10009141 3300031239 Bacteria 4044
119 Ga0265320_10000005 3300031240 Bacteria 354422
120 Ga0265325_10026447 3300031241 Bacteria 3142
121 Ga0265329_10003612 3300031242 Bacteria 6680
122 Ga0265329_10020714 3300031242 Bacteria 2217
123 Ga0265339_10052138 3300031249 Bacteria 2229
124 Ga0265331_10000013 3300031250 Bacteria 296011
125 Ga0265316_10002648 3300031344 Bacteria 18447
126 Ga0265316_10004150 3300031344 Bacteria 14477
127 Ga0265316_10080654 3300031344 Bacteria 2495
128 Ga0265316_10239727 3300031344 Bacteria 1333
129 Ga0307509_10150765 3300031507 Bacteria 2241
130 Ga0265313_10000019 3300031595 Bacteria 149106
131 Ga0265313_10012909 3300031595 Bacteria 5065
132 Ga0265314_10000024 3300031711 Bacteria 295216
133 Ga0265314_10000098 3300031711 Bacteria 133427
134 Ga0265314_10005821 3300031711 Bacteria 11039
135 Ga0265342_10001828 3300031712 Bacteria 19301
136 Ga0307507_10023084 3300033179 Bacteria 6846
137 Ga0373923_0102208 3300035111 Bacteria 1265
138 Ga0373954_0030408 3300035118 Bacteria 2490
139 Ga0436365_1429921 3300039437 Bacteria 5999
140 Ga0436363_0251217 3300039450 Bacteria 3283
141 Ga0451577_0000047 3300042876 Bacteria 312768
142 Ga0451577_0000663 3300042876 Bacteria 54262
143 Ga0451577_0005383 3300042876 Bacteria 13134
144 Ga0453683_0000006 3300044673 Bacteria 586638
145 Ga0453683_0004782 3300044673 Bacteria 9541
146 Ga0453683_0094333 3300044673 Bacteria 1877
147 Ga0453683_0160420 3300044673 Bacteria 1422
148 Ga0453684_0000611 3300044712 Bacteria 131332
149 Ga0453684_0000675 3300044712 Bacteria 122354
150 Ga0453684_0009589 3300044712 Bacteria 16891
151 Ga0453684_0013327 3300044712 Bacteria 13380
152 Ga0453684_0127292 3300044712 Bacteria 3063
153 Ga0451576_0000975 3300045051 Bacteria 53219
154 Ga0451576_0181834 3300045051 Bacteria 2195
155 Ga0451576_0227082 3300045051 Bacteria 1949
156 Ga0466967_0007259 3300045976 Bacteria 7971
157 Ga0495651_0041369 3300046462 Bacteria 3580
158 Ga0495653_0082313 3300046463 Bacteria 2376
159 Ga0495662_0003465 3300046476 Bacteria 7995
160 Ga0495664_0016032 3300046477 Bacteria 4267
161 Ga0495618_0100187 3300046514 Bacteria 1854
162 Ga0495628_0032481 3300046516 Bacteria 4214
163 Ga0495630_0080347 3300046517 Bacteria 2459
164 Ga0495630_0195791 3300046517 Bacteria 1542
165 Ga0495652_0052327 3300046529 Bacteria 3483
166 Ga0495640_0053908 3300046533 Bacteria 2756
167 Ga0495640_0149320 3300046533 Bacteria 1502
168 Ga0495586_0093381 3300046535 Bacteria 1664
169 Ga0495587_0021857 3300046536 Bacteria 3946
170 Ga0495645_0016183 3300046543 Bacteria 5318
171 Ga0495667_0030463 3300046559 Bacteria 3625
172 Ga0495634_0066927 3300046642 Bacteria 2377
173 Ga0495634_0080231 3300046642 Bacteria 2136
174 Ga0495635_0004085 3300046663 Bacteria 10129
175 Ga0495599_0008186 3300046678 Bacteria 6352
176 Ga0495623_0070824 3300046679 Bacteria 2171
177 Ga0495624_0019712 3300046690 Bacteria 4496
178 Ga0495600_0054010 3300046809 Bacteria 2624
179 Ga0495604_0043358 3300047317 Bacteria 3522
180 Ga0495636_0066718 3300047318 Bacteria 1530
181 Ga0495674_0023105 3300047319 Bacteria 5731
182 Ga0495674_0221322 3300047319 Bacteria 1564
183 Ga0495674_0393823 3300047319 Bacteria 1119
184 Ga0495680_0036836 3300047322 Bacteria 3923
185 Ga0495680_0043867 3300047322 Bacteria 3538
186 Ga0495675_0072724 3300047444 Bacteria 2169
187 Ga0495602_0142449 3300048088 Bacteria 1896
188 Ga0501034_0169617 3300049571 Bacteria 2150
189 Ga0501040_0337972 3300049576 Bacteria 1078
190 Ga0501068_0065530 3300049584 Bacteria 2211
191 Ga0501083_0003423 3300049744 Bacteria 11084
192 nmdc:mga05p37_173163_c1 3300050507 Bacteria 2631
193 nmdc:mga05p37_409417_c1 3300050507 Bacteria 1581
194 nmdc:mga0qj67_25729_c1 3300050509 Bacteria 4551
195 nmdc:mga06r32_622589_c1 3300050510 Bacteria 1049
196 nmdc:mga08y16_88739_c1 3300050511 Bacteria 3223
197 nmdc:mga0n895_130676_c1 3300050512 Bacteria 2536
198 nmdc:mga0n895_17095_c1 3300050512 Bacteria 6679
199 nmdc:mga0rr50_63633_c1 3300050513 Bacteria 2786
200 nmdc:mga0a205_201602_c1 3300050515 Bacteria 1880
201 Ga0500566_0130330 3300053094 Bacteria 1346
202 Ga0500616_0042586 3300053153 Bacteria 2431
203 Ga0070683_100000134
204 rootL2_10071120
205 Ga0070683_100272427
206 Ga0070680_100018833
207 Ga0070661_100030959
208 Ga0070661_100097796
209 Ga0070659_100006327
210 Ga0070659_100229125
211 Ga0070714_100403080
212 Ga0070713_100027822
213 Ga0070713_100171445
214 Ga0070705_100029183
215 Ga0070708_100298227
216 Ga0070662_100075092
217 Ga0070706_100009319
218 Ga0070706_100016493
219 Ga0070706_100029666
220 Ga0070706_100072181
221 Ga0070707_100015654
222 Ga0070707_100080996
223 Ga0070707_100130848
224 Ga0070707_100202575
225 Ga0070698_100001352
226 Ga0070698_100115922
227 Ga0070698_100158232
228 Ga0070699_100219605
229 Ga0070679_100015154
230 Ga0070679_100028361
231 Ga0070684_100093666
232 Ga0070684_100358107
233 Ga0070697_100016778
234 Ga0070697_100304458
235 Ga0068853_100064872
236 Ga0068853_100083214
237 Ga0070686_100007709
238 Ga0070686_100256459
239 Ga0070664_100013967
240 Ga0068857_100002813
241 Ga0068857_100094887
242 Ga0068854_100147436
243 Ga0068856_100017726
244 Ga0068864_100213884
245 Ga0068863_100000651
246 Ga0068858_100038248
247 Ga0081455_10083846
248 Ga0081538_10003396
249 Ga0070716_100050548
250 Ga0075428_100042880
251 Ga0075430_100006741
252 Ga0075431_100002720
253 Ga0075434_100140540
254 Ga0105240_10434533
255 Ga0111539_10106675
256 Ga0105245_10029656
257 Ga0114129_10097459
258 Ga0114129_10264840
259 Ga0105241_10003290
260 Ga0105241_10261689
261 Ga0105242_10026309
262 Ga0105242_10030740
263 Ga0105237_10306548
264 Ga0105237_10315035
265 Ga0105238_10015531
266 Ga0105246_10204094
267 Ga0157369_10016126
268 Ga0157374_10000043
269 Ga0157374_10000075
270 Ga0157374_10009596
271 Ga0157378_10000065
272 Ga0157378_10030851
273 Ga0157372_10000474
274 Ga0157372_10169037
275 Ga0163163_10031080
276 Ga0163163_10077347
277 Ga0157380_10021973
278 Ga0157376_10003156
279 Ga0157376_10136370
280 Ga0207705_10084904
281 Ga0207684_10005708
282 Ga0207684_10123045
283 Ga0207684_10294385
284 Ga0207707_10025784
285 Ga0207707_10300824
286 Ga0207695_10003054
287 Ga0207695_10003851
288 Ga0207660_10009954
289 Ga0207657_10021460
290 Ga0207649_10080602
291 Ga0207649_10170540
292 Ga0207652_10012815
293 Ga0207652_10059633
294 Ga0207646_10017055
295 Ga0207646_10038407
296 Ga0207646_10052903
297 Ga0207646_10074901
298 Ga0207646_10216674
299 Ga0207694_10020656
300 Ga0207694_10053746
301 Ga0207650_10062062
302 Ga0207700_10020784
303 Ga0207690_10146826
304 Ga0207661_10006411
305 Ga0207667_10003972
306 Ga0207703_10107651
307 Ga0207639_10202206
308 Ga0207702_10232514
309 Ga0207641_10002128
310 Ga0207674_10000019
311 Ga0207698_10051257
312 Ga0207698_10137746
313 Ga0207428_10010060
314 Ga0265337_1010410
315 Ga0265334_10020474
316 Ga0265318_10000011
317 Ga0265338_10004298
318 Ga0265330_10000019
319 Ga0265332_10005534
320 Ga0265328_10009141
321 Ga0265320_10000005
322 Ga0265325_10026447
323 Ga0265329_10003612
324 Ga0265329_10020714
325 Ga0265339_10052138
326 Ga0265331_10000013
327 Ga0265316_10002648
328 Ga0265316_10004150
329 Ga0265316_10080654
330 Ga0265316_10239727
331 Ga0307509_10150765
332 Ga0265313_10000019
333 Ga0265313_10012909
334 Ga0265314_10000024
335 Ga0265314_10000098
336 Ga0265314_10005821
337 Ga0265342_10001828
338 Ga0307507_10023084
339 Ga0373923_0102208
340 Ga0373954_0030408
341 Ga0436365_1429921
342 Ga0436363_0251217
343 Ga0451577_0000047
344 Ga0451577_0000663
345 Ga0451577_0005383
346 Ga0453683_0000006
347 Ga0453683_0004782
348 Ga0453683_0094333
349 Ga0453683_0160420
350 Ga0453684_0000611
351 Ga0453684_0000675
352 Ga0453684_0009589
353 Ga0453684_0013327
354 Ga0453684_0127292
355 Ga0451576_0000975
356 Ga0451576_0181834
357 Ga0451576_0227082
358 Ga0466967_0007259
359 Ga0495651_0041369
360 Ga0495653_0082313
361 Ga0495662_0003465
362 Ga0495664_0016032
363 Ga0495618_0100187
364 Ga0495628_0032481
365 Ga0495630_0080347
366 Ga0495630_0195791
367 Ga0495652_0052327
368 Ga0495640_0053908
369 Ga0495640_0149320
370 Ga0495586_0093381
371 Ga0495587_0021857
372 Ga0495645_0016183
373 Ga0495667_0030463
374 Ga0495634_0066927
375 Ga0495634_0080231
376 Ga0495635_0004085
377 Ga0495599_0008186
378 Ga0495623_0070824
379 Ga0495624_0019712
380 Ga0495600_0054010
381 Ga0495604_0043358
382 Ga0495636_0066718
383 Ga0495674_0023105
384 Ga0495674_0221322
385 Ga0495674_0393823
386 Ga0495680_0036836
387 Ga0495680_0043867
388 Ga0495675_0072724
389 Ga0495602_0142449
390 Ga0501034_0169617
391 Ga0501040_0337972
392 Ga0501068_0065530
393 Ga0501083_0003423
394 nmdc:mga05p37_173163_c1
395 nmdc:mga05p37_409417_c1
396 nmdc:mga0qj67_25729_c1
397 nmdc:mga06r32_622589_c1
398 nmdc:mga08y16_88739_c1
399 nmdc:mga0n895_130676_c1
400 nmdc:mga0n895_17095_c1
401 nmdc:mga0rr50_63633_c1
402 nmdc:mga0a205_201602_c1
403 Ga0500566_0130330
404 Ga0500616_0042586

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

29

273

0.99

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

30

340

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1n7h-assembly1.cif.gz_A-2 crystal structure of gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp 0.9773 1 325
1n7h-assembly1.cif.gz_B-2 crystal structure of gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp 0.9732 1 325
5uzh-assembly1.cif.gz_A crystal structure of a gdp-mannose dehydratase from naegleria fowleri 0.973 1 326
7kf3-assembly1.cif.gz_B crystal structure of gdp-mannose 4,6-dehydratase from brucella abortus (strain 2308) in complex with guanosine-diphosphate-rhamnose 0.9721 2 325
1n7g-assembly1.cif.gz_B crystal structure of the gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp-rhamnose. 0.9717 1 325
ID Description Score Start End Superfamily
af_P0AC88_3_270_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9922 2 266 3.40.50.720
af_P0AC88_3_270_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9775 2 266 3.40.50.720
1n7gB01 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9711 190 325 3.90.25.10
af_F1QPT3_45_368_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9648 25 320 3.40.50.720
af_Q4D941_50_182_3.90.25.10 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9549 190 303 3.90.25.10
ID Description Score Start End GO Terms
AF-X0UM79-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9996 101 296 GO:0008446
GO:0042351
AF-A0A2V5T8D5-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9987 210 326 GO:0008446
GO:0042351
AF-A0A6H9KZ17-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase) 0.9961 1 324 GO:0008446
GO:0042351
GO:0070401
AF-A0A532DI86-F1-model_v4 Multifunctional fusion protein [Includes: GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase); GDP-L-fucose synthase (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase)] 0.9953 2 325 GO:0008446
GO:0016853
GO:0042351
GO:0050577
GO:0070401
AF-L8NVN8-F1-model_v4 deleted 0.9945 78 325

Map