F308776

General Info

Members Datasets Scaffolds Average Seq Length
201 161 124 839

Family's Representative Sequence

Representative Sequence 3300037471|Ga0395905_0000821|Ga0395905_0000821_37202_39952
Length 890
Sequence MWELNQRSKLSQISGVNTNAFSLDYAISFYGRKHTSSAAVIFEIATRGLGLLSYDRASVDLTNCDKEPIHVPGSIQPHGAMLVLDSSSYNVSYVSSNIGQFLGVQLSDLLGQPLEAAVGSKLTHDIRNATAVAATGQKTAVVHRVDLGETKSPADILVHEFKGRLFLEFEAAASIDDTEIALHLTQSLVRRIDKETDVDSLARSVARLVRATLGYDRVMIYRFLHNGAGRVIAEAKTAVMPSFLGHHFPAGDIPAQARRLYIDNWVRVIGDSSFVPVQLTPGLSHGEAPVDMSYAHLRSVSPIHCEYLRNMGIAASMSISIVVDGELWGLVACHHDTPRALSIPLRMSAELFGQYLSLQISAIEHRKAKLGRKLGEFSSLIACDGAAVWIGGEWTATGVVPDRKEVEPLIALIAEKAGRKIWETQNLKMLLPASTAFGERVAGVLAIPVSPAADDYLCYFRSEEAHEMSWAGEPVKNETLTPSGVRLSPRGSFETWRDDVRNQSLPWTDADLIIAEAIRNYVRDVLISHNDATEEIRVRTDSERALLNAELNHRVKNILALVKSIAVQTGANASSVDEYASSFEGRLRALSYAHDQSFAGKNGGELRSLIEAEAGMHRFNSLPNRINLSGPSIGMSERAFGVFALLLHEMMTNAAKYGSLSVPAGRLDLSWALIENGDCVIDWRESGGPAVSAPTRTGFGTTLIQRTLSHDLDGKVELDFAPDGLKAHFVLPAAHLHELSQEPAVSTEVHLIDQPLAGLMVLLVEDQALIAMDTEELLKGLGASLVLVASTVDAALDQLSQTNPDCAVLDLNLGTETSERLAIVLQERKIPYVFATGYRDSVSIPEMFTHIPVVRKPVSHDSLSLRLSQALGQTNFSRYSEAVYDGIPPV

Samples

Sample ID Description Type Environment
1 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
2 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
3 2511231024 Pseudomonas sp. GM84 Isolate Nodule
4 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
5 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
6 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
7 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
8 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
9 2585427594 Rhizobium sp. YR528 Isolate Rhizosphere
10 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
11 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
12 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
13 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
14 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
15 2643221557 Ensifer sp. Root558 Isolate Unclassified
16 2643221568 Rhizobium sp. Root564 Isolate Unclassified
17 2643221582 Rhizobium sp. Root651 Isolate Unclassified
18 2643221607 Rhizobium sp. Root73 Isolate Unclassified
19 2643221610 Ensifer sp. Root74 Isolate Unclassified
20 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
21 2643221668 Ensifer sp. Root423 Isolate Unclassified
22 2643221675 Ensifer sp. Root1298 Isolate Unclassified
23 2643221680 Ensifer sp. Root1312 Isolate Unclassified
24 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
25 2643221688 Rhizobium sp. Root482 Isolate Unclassified
26 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
27 2643221693 Rhizobium sp. Root491 Isolate Unclassified
28 2643221726 Ensifer sp. Root954 Isolate Unclassified
29 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
30 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
31 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
32 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
33 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
34 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
35 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
36 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
37 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
38 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
39 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
40 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
41 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
42 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
43 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
44 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
45 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
46 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
47 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
48 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
49 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
50 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
51 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
52 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
53 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
54 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
55 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
56 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
57 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
58 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
59 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
60 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
61 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
62 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
63 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
64 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
65 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
66 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
67 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
68 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
69 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
70 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
71 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
72 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
73 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
74 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
75 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
76 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
77 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
78 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
79 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
80 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
81 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
82 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
83 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
84 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
85 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
86 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
87 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
88 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
89 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
90 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
91 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
93 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
96 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
98 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
99 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
100 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
101 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
103 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
104 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
105 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
106 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
107 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
108 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
109 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
110 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
111 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
112 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
113 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
114 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
115 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
116 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
117 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
118 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
119 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
120 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
121 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
122 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
123 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
124 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
125 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
126 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
127 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
128 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
129 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
130 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
131 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
132 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
133 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
134 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
135 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
136 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
137 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
138 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
139 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
140 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
141 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
142 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
143 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
144 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
145 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
146 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
147 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
148 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
149 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
150 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
151 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
152 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
153 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
154 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
155 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
156 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
157 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
158 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
159 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
160 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
161 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 62.19
Metatranscriptomes 0
Isolates 37.81

Biome Distribution

Category Percentage (%)
Aerial Root 2.49
Bulb 0
Endosphere 20.4
Nodule 11.44
Rhizoplane 3.48
Rhizosphere 28.86
Stem 0
Stem Tuber 0
Unclassified 33.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055526_1000084 3300003771 Bacteria 86813
2 Ga0055524_1001083 3300003775 Bacteria 16646
3 Ga0055536_1000607 3300003781 Bacteria 24398
4 Ga0055536_1010146 3300003781 Bacteria 3781
5 Ga0055530_10000067 3300003791 Bacteria 92653
6 Ga0055531_10000545 3300003794 Bacteria 33360
7 Ga0058692_1002974 3300003856 Bacteria 5442
8 Ga0065165_1004956 3300005262 Bacteria 7831
9 Ga0070665_100011556 3300005548 Bacteria 8926
10 Ga0075364_10000974 3300006051 Bacteria 15102
11 Ga0075364_10002126 3300006051 Bacteria 11084
12 Ga0079104_1000341 3300006946 Bacteria 56218
13 Ga0099826_10002051 3300006948 Bacteria 12724
14 Ga0105251_10013836 3300009011 Bacteria 4491
15 Ga0105250_10002875 3300009092 Bacteria 8414
16 Ga0105243_10012600 3300009148 Bacteria 6389
17 Ga0157373_10006877 3300013100 Bacteria 8467
18 Ga0157371_10000017 3300013102 Bacteria 320830
19 Ga0157370_10000494 3300013104 Bacteria 49013
20 Ga0209675_1000037 3300025291 Bacteria 250958
21 Ga0209676_1000323 3300025292 Bacteria 92049
22 Ga0209025_1000213 3300025294 Bacteria 139002
23 Ga0209025_1000416 3300025294 Bacteria 85510
24 Ga0209564_1000017 3300025295 Bacteria 594063
25 Ga0209564_1000468 3300025295 Bacteria 67696
26 Ga0209050_1000104 3300025298 Bacteria 228921
27 Ga0209256_1000832 3300025299 Bacteria 39045
28 Ga0209257_1000120 3300025304 Bacteria 223025
29 Ga0209281_1000035 3300027111 Bacteria 382327
30 Ga0209371_1000022 3300027312 Bacteria 536342
31 Ga0209371_1000173 3300027312 Bacteria 96201
32 Ga0209371_1003027 3300027312 Bacteria 8677
33 Ga0209282_1005517 3300027666 Bacteria 7781
34 Ga0209813_10000552 3300027866 Bacteria 8838
35 Ga0268266_10004079 3300028379 Bacteria 14119
36 Ga0268256_1000019 3300030500 Bacteria 587949
37 Ga0395905_0000821 3300037471 Bacteria 40750
38 Ga0495627_005361 3300046453 Bacteria 5181
39 Ga0495638_0032281 3300046460 Bacteria 3358
40 Ga0495605_0000001 3300046474 Bacteria 614538
41 Ga0495605_0000036 3300046474 Bacteria 203902
42 Ga0495605_0000080 3300046474 Bacteria 125370
43 Ga0495607_0000847 3300046501 Bacteria 28896
44 Ga0495583_0000028 3300046506 Bacteria 255787
45 Ga0495583_0002005 3300046506 Bacteria 18589
46 Ga0495606_0000027 3300046507 Bacteria 253573
47 Ga0495610_0000710 3300046512 Bacteria 31775
48 Ga0495620_0000006 3300046515 Bacteria 273098
49 Ga0495620_0000028 3300046515 Bacteria 123172
50 Ga0495620_0015414 3300046515 Bacteria 3861
51 Ga0495631_0001086 3300046518 Bacteria 16881
52 Ga0495632_0000159 3300046519 Bacteria 69880
53 Ga0495648_0000597 3300046524 Bacteria 38655
54 Ga0495654_0001114 3300046530 Bacteria 19384
55 Ga0495609_0000081 3300046538 Bacteria 116100
56 Ga0495633_0000028 3300046558 Bacteria 203214
57 Ga0495661_0000217 3300046665 Bacteria 66241
58 Ga0495588_0004670 3300046674 Bacteria 6048
59 Ga0495670_0000642 3300046691 Bacteria 16684
60 Ga0495589_0000379 3300046794 Bacteria 34046
61 Ga0495660_0001181 3300046810 Bacteria 18415
62 Ga0495683_0000060 3300047323 Bacteria 115881
63 Ga0495679_000396 3300047446 Bacteria 32865
64 Ga0495681_0002397 3300047470 Bacteria 13416
65 Ga0495686_0010208 3300047472 Bacteria 6690
66 Ga0496106_0046037 3300048909 Bacteria 3278
67 Ga0496116_0000142 3300048919 Bacteria 150342
68 Ga0496116_0002619 3300048919 Bacteria 18686
69 Ga0496116_0015853 3300048919 Bacteria 5932
70 Ga0496116_0022283 3300048919 Bacteria 4751
71 Ga0496117_0000002 3300048920 Bacteria 2483758
72 Ga0496117_0001193 3300048920 Bacteria 39104
73 Ga0496117_0009915 3300048920 Bacteria 8765
74 Ga0496118_0000087 3300048921 Bacteria 176693
75 Ga0496118_0033881 3300048921 Bacteria 4181
76 Ga0496119_0000016 3300048922 Bacteria 309806
77 Ga0496119_0013925 3300048922 Bacteria 6345
78 Ga0496119_0021420 3300048922 Bacteria 4674
79 Ga0496120_0000399 3300048923 Bacteria 70103
80 Ga0496120_0036208 3300048923 Bacteria 2940
81 Ga0496121_0000003 3300048924 Bacteria 1191431
82 Ga0496121_0000235 3300048924 Bacteria 118983
83 Ga0496121_0017030 3300048924 Bacteria 7456
84 Ga0496121_0055040 3300048924 Bacteria 3318
85 Ga0496121_0077085 3300048924 Bacteria 2656
86 Ga0496122_0000004 3300048925 Bacteria 645283
87 Ga0496122_0000266 3300048925 Bacteria 117021
88 Ga0496123_0000007 3300048926 Bacteria 645283
89 Ga0496123_0000018 3300048926 Bacteria 404553
90 Ga0496124_0000252 3300048927 Bacteria 103596
91 Ga0496124_0000638 3300048927 Bacteria 57928
92 Ga0496124_0002508 3300048927 Bacteria 23884
93 Ga0496124_0003328 3300048927 Bacteria 19797
94 Ga0496124_0062164 3300048927 Bacteria 3126
95 Ga0496124_0073042 3300048927 Bacteria 2839
96 Ga0496125_0000039 3300048928 Bacteria 318665
97 Ga0496125_0000040 3300048928 Bacteria 314478
98 Ga0496125_0000575 3300048928 Bacteria 62850
99 Ga0496125_0034778 3300048928 Bacteria 4434
100 Ga0496126_0000670 3300048929 Bacteria 63371
101 Ga0496126_0001062 3300048929 Bacteria 46308
102 Ga0495678_000020 3300049459 Bacteria 253654
103 nmdc:mga00v17_214_c1 3300050491 Bacteria 34878
104 nmdc:mga00v17_238_c1 3300050491 Bacteria 32698
105 nmdc:mga00v17_806_c1 3300050491 Bacteria 17040
106 nmdc:mga0yw44_119_c1 3300050492 Bacteria 27582
107 nmdc:mga06z11_15003_c1 3300050494 Bacteria 3448
108 nmdc:mga0sz30_523_c1 3300050516 Bacteria 14337
109 Ga0500641_0011934 3300053096 Bacteria 3163
110 Ga0500556_0000002 3300053104 Bacteria 773626
111 Ga0500618_000551 3300053125 Bacteria 23266
112 Ga0500642_0000026 3300053130 Bacteria 127731
113 Ga0500652_000571 3300053131 Bacteria 12893
114 Ga0500561_0000212 3300053137 Bacteria 10578
115 Ga0500568_0004313 3300053139 Bacteria 7632
116 Ga0500573_0001478 3300053140 Bacteria 11287
117 Ga0500586_000083 3300053145 Bacteria 16354
118 Ga0500604_0001021 3300053151 Bacteria 7824
119 Ga0500616_0000031 3300053153 Bacteria 415013
120 Ga0500622_0001081 3300053156 Bacteria 22678
121 Ga0500622_0005731 3300053156 Bacteria 7380
122 Ga0500624_001053 3300053157 Bacteria 5402
123 Ga0500633_0005800 3300053160 Bacteria 2972
124 Ga0500636_0000003 3300053177 Bacteria 240189

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046474 Ga0495605_0000036 Ga0495605_0000036_191333_193450 658
2 3300048924 Ga0496121_0017030 Ga0496121_0017030_29_2095 666
3 iso_pu_bacteria 2821123053 2821130764 673
4 3300053151 Ga0500604_0001021 Ga0500604_0001021_4147_6627 763
5 3300050491 nmdc:mga00v17_214_c1 nmdc:mga00v17_214_c1_7650_10124 766
6 3300048909 Ga0496106_0046037 Ga0496106_0046037_74_2557 770
7 3300048924 Ga0496121_0055040 Ga0496121_0055040_60_2543 770
8 3300048927 Ga0496124_0073042 Ga0496124_0073042_200_2683 770
9 3300048929 Ga0496126_0000670 Ga0496126_0000670_20491_22974 770
10 3300046519 Ga0495632_0000159 Ga0495632_0000159_59474_61948 771
11 3300048927 Ga0496124_0000638 Ga0496124_0000638_15406_17916 774
12 iso_pu_bacteria 2643221557 2643809601 775
13 iso_pu_bacteria 2643221610 2644066682 775
14 iso_pu_bacteria 2643221668 2644375944 775
15 iso_pu_bacteria 2643221675 2644415106 775
16 iso_pu_bacteria 2643221680 2644451516 775
17 iso_pu_bacteria 2643221726 2644693108 775
18 3300003775 Ga0055524_1001083 Ga0055524_100108316 779
19 3300025299 Ga0209256_1000832 Ga0209256_10008323 779
20 3300046512 Ga0495610_0000710 Ga0495610_0000710_17929_20469 785
21 3300046515 Ga0495620_0015414 Ga0495620_0015414_128_2668 785
22 3300047472 Ga0495686_0010208 Ga0495686_0010208_2669_5209 785
23 3300006946 Ga0079104_1000341 Ga0079104_100034138 786
24 3300027111 Ga0209281_1000035 Ga0209281_100003522 786
25 3300027111 Ga0209281_1000035 Ga0209281_1000035369 786
26 3300053140 Ga0500573_0001478 Ga0500573_0001478_3728_6280 786
27 3300006051 Ga0075364_10002126 Ga0075364_1000212617 790
28 3300048924 Ga0496121_0077085 Ga0496121_0077085_66_2504 791
29 3300005262 Ga0065165_1004956 Ga0065165_10049563 792
30 3300048919 Ga0496116_0000142 Ga0496116_0000142_19958_22402 793
31 3300053125 Ga0500618_000551 Ga0500618_000551_9374_11866 794
32 3300006051 Ga0075364_10000974 Ga0075364_100009745 795
33 3300050491 nmdc:mga00v17_806_c1 nmdc:mga00v17_806_c1_3329_5797 795
34 3300003791 Ga0055530_10000067 Ga0055530_1000006743 796
35 3300003794 Ga0055531_10000545 Ga0055531_1000054528 796
36 3300025292 Ga0209676_1000323 Ga0209676_100032338 796
37 3300025298 Ga0209050_1000104 Ga0209050_1000104187 796
38 3300025304 Ga0209257_1000120 Ga0209257_1000120167 796
39 iso_pu_bacteria 2582581294 2585205895 797
40 3300003781 Ga0055536_1000607 Ga0055536_10006075 799
41 3300025291 Ga0209675_1000037 Ga0209675_1000037177 799
42 3300037471 Ga0395905_0000821 Ga0395905_0000821_37202_39952 800
43 3300009011 Ga0105251_10013836 Ga0105251_100138364 811
44 3300009092 Ga0105250_10002875 Ga0105250_100028753 811
45 3300046474 Ga0495605_0000001 Ga0495605_0000001_361918_364437 811
46 3300048929 Ga0496126_0001062 Ga0496126_0001062_32178_34733 814
47 3300048924 Ga0496121_0000235 Ga0496121_0000235_56109_58730 818
48 3300048928 Ga0496125_0000040 Ga0496125_0000040_92996_95560 819
49 iso_pu_bacteria 2558860983 2561469056 820
50 iso_pu_bacteria 2599185156 2599332455 820
51 iso_pu_bacteria 2842922631 2842922724 820
52 iso_pu_bacteria 2511231024 2511375702 821
53 3300046453 Ga0495627_005361 Ga0495627_005361_1035_3572 822
54 3300046506 Ga0495583_0000028 Ga0495583_0000028_206193_208730 822
55 3300046515 Ga0495620_0000028 Ga0495620_0000028_73698_76235 822
56 3300046518 Ga0495631_0001086 Ga0495631_0001086_5749_8286 822
57 3300046524 Ga0495648_0000597 Ga0495648_0000597_15012_17549 822
58 3300046530 Ga0495654_0001114 Ga0495654_0001114_12410_14947 822
59 3300046538 Ga0495609_0000081 Ga0495609_0000081_47202_49739 822
60 3300046558 Ga0495633_0000028 Ga0495633_0000028_46925_49462 822
61 3300046665 Ga0495661_0000217 Ga0495661_0000217_17025_19562 822
62 3300046794 Ga0495589_0000379 Ga0495589_0000379_278_2815 822
63 3300046810 Ga0495660_0001181 Ga0495660_0001181_12446_14983 822
64 3300047323 Ga0495683_0000060 Ga0495683_0000060_65443_67980 822
65 3300047446 Ga0495679_000396 Ga0495679_000396_2947_5484 822
66 3300047470 Ga0495681_0002397 Ga0495681_0002397_4291_6828 822
67 3300048927 Ga0496124_0062164 Ga0496124_0062164_424_2961 822
68 3300049459 Ga0495678_000020 Ga0495678_000020_204329_206866 822
69 iso_pu_bacteria 2585427594 2585846865 822
70 iso_pu_bacteria 2643221688 2644492846 822
71 3300025294 Ga0209025_1000416 Ga0209025_100041610 823
72 3300048920 Ga0496117_0001193 Ga0496117_0001193_8622_11177 823
73 3300048925 Ga0496122_0000266 Ga0496122_0000266_13318_15873 823
74 3300048926 Ga0496123_0000018 Ga0496123_0000018_191363_193918 823
75 3300048927 Ga0496124_0002508 Ga0496124_0002508_11555_14110 823
76 3300048928 Ga0496125_0000575 Ga0496125_0000575_2637_5192 823
77 3300050494 nmdc:mga06z11_15003_c1 nmdc:mga06z11_15003_c1_71_2614 823
78 iso_pu_bacteria 2643221607 2644051567 823
79 iso_pu_bacteria 2643221636 2644200065 823
80 iso_pu_bacteria 2643221686 2644480436 823
81 iso_pu_bacteria 2643221689 2644498834 823
82 iso_pu_bacteria 2775506901 2776257902 823
83 iso_pu_bacteria 2791355253 2793283716 823
84 iso_pu_bacteria 2891373044 2891376804 823
85 3300046506 Ga0495583_0002005 Ga0495583_0002005_8826_11369 824
86 3300003856 Ga0058692_1002974 Ga0058692_10029745 825
87 3300005548 Ga0070665_100011556 Ga0070665_1000115563 825
88 3300006948 Ga0099826_10002051 Ga0099826_1000205111 825
89 3300009148 Ga0105243_10012600 Ga0105243_100126002 825
90 3300013100 Ga0157373_10006877 Ga0157373_100068776 825
91 3300013102 Ga0157371_10000017 Ga0157371_10000017120 825
92 3300013104 Ga0157370_10000494 Ga0157370_1000049430 825
93 3300025294 Ga0209025_1000213 Ga0209025_100021358 825
94 3300027312 Ga0209371_1000022 Ga0209371_1000022140 825
95 3300027312 Ga0209371_1000173 Ga0209371_100017348 825
96 3300027312 Ga0209371_1003027 Ga0209371_10030273 825
97 3300027666 Ga0209282_1005517 Ga0209282_10055174 825
98 3300027866 Ga0209813_10000552 Ga0209813_100005527 825
99 3300028379 Ga0268266_10004079 Ga0268266_100040797 825
100 3300030500 Ga0268256_1000019 Ga0268256_1000019380 825
101 3300046474 Ga0495605_0000080 Ga0495605_0000080_107720_110266 825
102 3300046501 Ga0495607_0000847 Ga0495607_0000847_20727_23273 825
103 3300046507 Ga0495606_0000027 Ga0495606_0000027_145628_148174 825
104 3300046674 Ga0495588_0004670 Ga0495588_0004670_1314_3866 825
105 3300048919 Ga0496116_0015853 Ga0496116_0015853_1545_4097 825
106 3300048919 Ga0496116_0022283 Ga0496116_0022283_1531_4083 825
107 3300048920 Ga0496117_0000002 Ga0496117_0000002_406711_409263 825
108 3300048920 Ga0496117_0009915 Ga0496117_0009915_5347_7902 825
109 3300048921 Ga0496118_0000087 Ga0496118_0000087_18270_20822 825
110 3300048921 Ga0496118_0033881 Ga0496118_0033881_1072_3624 825
111 3300048922 Ga0496119_0000016 Ga0496119_0000016_192337_194883 825
112 3300048922 Ga0496119_0013925 Ga0496119_0013925_2098_4650 825
113 3300048922 Ga0496119_0021420 Ga0496119_0021420_810_3362 825
114 3300048923 Ga0496120_0000399 Ga0496120_0000399_64399_66951 825
115 3300048924 Ga0496121_0000003 Ga0496121_0000003_454066_456621 825
116 3300048925 Ga0496122_0000004 Ga0496122_0000004_236414_238966 825
117 3300048926 Ga0496123_0000007 Ga0496123_0000007_236414_238966 825
118 3300048927 Ga0496124_0000252 Ga0496124_0000252_65239_67791 825
119 3300048927 Ga0496124_0003328 Ga0496124_0003328_7789_10341 825
120 3300048928 Ga0496125_0000039 Ga0496125_0000039_232309_234864 825
121 3300048928 Ga0496125_0034778 Ga0496125_0034778_1015_3567 825
122 3300050491 nmdc:mga00v17_238_c1 nmdc:mga00v17_238_c1_8008_10560 825
123 3300050492 nmdc:mga0yw44_119_c1 nmdc:mga0yw44_119_c1_12254_14806 825
124 3300050516 nmdc:mga0sz30_523_c1 nmdc:mga0sz30_523_c1_4061_6613 825
125 3300053137 Ga0500561_0000212 Ga0500561_0000212_5983_8535 825
126 3300053157 Ga0500624_001053 Ga0500624_001053_1894_4446 825
127 3300053177 Ga0500636_0000003 Ga0500636_0000003_185316_187868 825
128 iso_pu_bacteria 2537561587 2537876066 825
129 iso_pu_bacteria 2554235003 2554248287 825
130 iso_pu_bacteria 2558860242 2559295403 825
131 iso_pu_bacteria 2599185210 2599601716 825
132 iso_pu_bacteria 2600255279 2601610023 825
133 iso_pu_bacteria 2600255308 2601746798 825
134 iso_pu_bacteria 2643221568 2643856706 825
135 iso_pu_bacteria 2643221582 2643920287 825
136 iso_pu_bacteria 2643221693 2644521902 825
137 iso_pu_bacteria 2808606387 2808987862 825
138 iso_pu_bacteria 2818991439 2819559115 825
139 iso_pu_bacteria 2838675328 2838675716 825
140 iso_pu_bacteria 2838714209 2838714598 825
141 iso_pu_bacteria 2838719591 2838721601 825
142 iso_pu_bacteria 2838724970 2838725358 825
143 iso_pu_bacteria 2841846520 2841848584 825
144 iso_pu_bacteria 2841859092 2841862182 825
145 iso_pu_bacteria 2842124991 2842125385 825
146 iso_pu_bacteria 2842130223 2842130611 825
147 iso_pu_bacteria 2842152218 2842154219 825
148 iso_pu_bacteria 2842170452 2842170842 825
149 iso_pu_bacteria 2842175837 2842177839 825
150 iso_pu_bacteria 2842187318 2842187707 825
151 iso_pu_bacteria 2842211629 2842212018 825
152 iso_pu_bacteria 2842224351 2842226363 825
153 iso_pu_bacteria 2842515876 2842518966 825
154 iso_pu_bacteria 2899792073 2899795995 825
155 iso_pu_bacteria 2899845264 2899849165 825
156 iso_pu_bacteria 2919114240 2919114634 825
157 iso_pu_bacteria 2926754445 2926755652 825
158 iso_pu_bacteria 2926760298 2926762772 825
159 iso_pu_bacteria 2929138655 2929140927 825
160 iso_pu_bacteria 2933006813 2933008864 825
161 iso_pu_bacteria 2933011516 2933014860 825
162 iso_pu_bacteria 2933594066 2933596536 825
163 iso_pu_bacteria 2978969890 2978974682 825
164 iso_pu_bacteria 2979089926 2979094738 825
165 iso_pu_bacteria 2979095461 2979100696 825
166 iso_pu_bacteria 2979100975 2979103969 825
167 iso_pu_bacteria 2984509177 2984511463 825
168 iso_pu_bacteria 2984518228 2984522176 825
169 iso_pu_bacteria 2984537506 2984541475 825
170 iso_pu_bacteria 2984587000 2984590060 825
171 iso_pu_bacteria 2984601300 2984603752 825
172 iso_pu_bacteria 2989771324 2989774732 825
173 iso_pu_bacteria 650716007 650740613 825
174 iso_pu_bacteria 8003570095 8003571680 825
175 iso_pu_bacteria 8054460903 8054463038 825
176 3300003781 Ga0055536_1010146 Ga0055536_10101462 826
177 3300025295 Ga0209564_1000468 Ga0209564_10004682 826
178 3300046460 Ga0495638_0032281 Ga0495638_0032281_36_2585 826
179 3300046515 Ga0495620_0000006 Ga0495620_0000006_192718_195336 826
180 3300053156 Ga0500622_0001081 Ga0500622_0001081_18107_20656 826
181 iso_pu_bacteria 2510461069 2510839299 826
182 iso_pu_bacteria 2510917026 2511169722 826
183 iso_pu_bacteria 2818991461 2819687670 826
184 iso_pu_bacteria 2818991461 2819687771 826
185 3300053145 Ga0500586_000083 Ga0500586_000083_12425_14980 827
186 3300046691 Ga0495670_0000642 Ga0495670_0000642_8623_11187 828
187 3300048919 Ga0496116_0002619 Ga0496116_0002619_3675_6239 828
188 3300048923 Ga0496120_0036208 Ga0496120_0036208_320_2878 828
189 3300053096 Ga0500641_0011934 Ga0500641_0011934_10_2574 828
190 3300053104 Ga0500556_0000002 Ga0500556_0000002_108552_111116 828
191 3300053130 Ga0500642_0000026 Ga0500642_0000026_115629_118193 828
192 3300053131 Ga0500652_000571 Ga0500652_000571_7981_10545 828
193 3300053139 Ga0500568_0004313 Ga0500568_0004313_3132_5696 828
194 3300053153 Ga0500616_0000031 Ga0500616_0000031_41599_44163 828
195 3300053156 Ga0500622_0005731 Ga0500622_0005731_2721_5285 828
196 3300053160 Ga0500633_0005800 Ga0500633_0005800_134_2698 828
197 iso_pu_bacteria 2602042107 2603861411 828
198 iso_pu_bacteria 2857524615 2857530185 828
199 iso_pu_bacteria 2919073203 2919079543 828
200 3300003771 Ga0055526_1000084 Ga0055526_100008439 831
201 3300025295 Ga0209564_1000017 Ga0209564_1000017345 831

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07536

HWE_HK

HWE histidine kinase

550

632

0.95

PF00360

PHY

Phytochrome region

354

531

0.94

PF08446

PAS_2

PAS fold

64

172

0.9

PF01590

GAF

GAF domain

197

363

0.6

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ab6-assembly2.cif.gz_B structure of chey mutant f14n, v86t 0.8943 716 827
6m8o-assembly1.cif.gz_A crystal structure of the receiver domain of lytr from staphylococcus aureus 0.8877 717 825
4lx8-assembly1.cif.gz_A crystal structure (2.2a) of mg2+ bound chey3 of vibrio cholerae 0.8842 716 826
7lsc-assembly1.cif.gz_D crystal structure of near-infrared fluorescent protein mirfp670nano3 0.8825 141 291
1ymv-assembly1.cif.gz_A signal transduction protein chey mutant with phe 14 replaced by gly, ser 15 replaced by gly, and met 17 replaced by gly 0.881 717 827
ID Description Score Start End Superfamily
4y3iA02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9605 119 294 3.30.450.40
4o01B01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9531 120 295 3.30.450.40
4y3iA02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9207 119 294 3.30.450.40
5llyA02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9168 125 289 3.30.450.40
4s21B01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9161 127 296 3.30.450.40
ID Description Score Start End GO Terms
AF-A0A1L3ZV45-F1-model_v4 Response regulatory domain-containing protein 0.9364 713 827 GO:0000160
AF-P93523-F1-model_v4 Phytochrome A-type protein 0.9302 159 296
AF-A0A2N1CSQ4-F1-model_v4 Response regulator 0.9283 716 827 GO:0000160
AF-A0A087LR28-F1-model_v4 deleted 0.9267 719 825
AF-A0A6B8LYU1-F1-model_v4 Response regulator 0.9264 716 824 GO:0000160

Feature Viewer

pLDDT pTM Quality
77.26 0.52 Medium
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Predicted Structure (AlphaFold2)

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