F306739

General Info

Members Datasets Scaffolds Average Seq Length
200 126 400 1062

Family's Representative Sequence

Representative Sequence 3300005338|Ga0068868_100012811|Ga0068868_1000128112
Length 1102
Sequence MAEKESKSRIKASRAFGLAGRIAHSFINSKLTPLVIVAALLLGAFSILKTPREEEPQIVVPMLDVLIQMPGASAEEVAQRVSLPTEKLLRDVPGVEYTYSISHPGMSMLVVRFYVGTKEENAIVETYNKLYSNFDRNPPGVSQPIIKVRAIDDVPILALTLWGKDYDSYHLRRIAGELENSLKPLDGVSETKIIGGERRQVRVVLDTQRLAAYGLTPAAIVAQLQNANIRGQAGSFARDNRQFQVEAGTFFTSLEDLHQVVVGVHAGHPVYLRDVAEKLQDGPAEPDTYVLFANARGGAEQKPGAEYPAVTITFSKRKDTNATDISRRVLDNMNALRGYLLPNDLKVTVTRNYGETAKEKSDELLKHLLIATLSVTLLIALALGWRESGVVLLAVPVTLALTLGVFYLSGYTLNRVTLFALIFSIGILVDDAIVVVENIARHLRLPENRARSVMEIVVEAVDEVGTPTILATFAVICAVLPNAFVRGLAGPYMRPIPVGASAAMLFSLLVAFIVLPWAASRLLTRHRGIGGHSGQPTEGWTTRLYRRMMNPLILNECRRWMFLGGVGILLLAAIALVPLKWVRLKMLPFDNKSEFQVIVDMPDGTPLERTTNLAQKLGQYLGTQPEVMNYQIYAGTSGPYNFNGLVRHYYLRNQPNQADIQVNLLSRHNRSAQSHDIARRLRPELDKIADPFGARIKIAEVPPGPPVLQTLVAEVYGPDYKGQIELAAQIKKVFQQTSGVVDVDWYVEDPQTKYDMQVDLAKAALHGISPAEVTRTLQIGLGGANAGLLHDSHSREDIPIEVRLARPDRSAIDQLGNLKLATPFGGQIALQEVTTLHQTTTDTSLYRKNLQPVVYVTGNVAGEEESPVYAIMKMSDAIDKLKLPDGYSVKQYKGTSMPERSDRFSMKWDGEWHITVEVFRDLGLAFAAVLVLIYVMVVGWFRSFITPLVIMAPIPLTLVGILPAHAMTGAFFTATSMIGFIAGAGIVVRNAVILVDFIELRRSQGMSLEDAVVDAGAVRFRPMLLTAAAVVVGASVILFDPIFQGLALSLVAGEVASTALSRVAVPVLYYLAKRGKVTASDRVTMSPVPCRLSILGRMATQL

Samples

Sample ID Description Type Environment
1 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
2 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
39 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
64 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
65 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
66 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
67 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
68 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
69 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
70 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
71 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
72 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
73 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
74 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
75 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
76 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
79 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
85 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
86 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
87 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
88 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
89 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
90 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
91 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
92 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
93 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
94 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
95 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
96 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
97 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
98 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
99 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
100 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
101 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
102 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
103 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
104 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
105 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
106 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
107 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
108 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
111 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
112 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
119 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
120 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
121 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
122 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
123 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
124 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
125 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
126 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1
Nodule 0
Rhizoplane 3
Rhizosphere 96
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068868_100012811 3300005338 Bacteria 6134
2 Ga0070666_10012307 3300005335 Bacteria 5393
3 Ga0070682_100016712 3300005337 Bacteria 4270
4 Ga0070661_100027813 3300005344 Bacteria 4075
5 Ga0070669_100025507 3300005353 Bacteria 4246
6 Ga0070667_100036585 3300005367 Bacteria 4116
7 Ga0070709_10010568 3300005434 Bacteria 5116
8 Ga0070709_10019159 3300005434 Bacteria 3951
9 Ga0070714_100000065 3300005435 Bacteria 96459
10 Ga0070714_100000817 3300005435 Bacteria 22025
11 Ga0070714_100001981 3300005435 Bacteria 14965
12 Ga0070714_100012527 3300005435 Bacteria 6776
13 Ga0070713_100000668 3300005436 Bacteria 21918
14 Ga0070713_100006016 3300005436 Bacteria 8355
15 Ga0070713_100008525 3300005436 Bacteria 7272
16 Ga0070711_100002761 3300005439 Bacteria 10069
17 Ga0070708_100008889 3300005445 Bacteria 8088
18 Ga0070663_100004139 3300005455 Bacteria 8479
19 Ga0070707_100003194 3300005468 Bacteria 15508
20 Ga0070684_100001056 3300005535 Bacteria 19687
21 Ga0070684_100019022 3300005535 Bacteria 5675
22 Ga0070672_100000384 3300005543 Bacteria 25663
23 Ga0070665_100000931 3300005548 Bacteria 37425
24 Ga0068857_100000091 3300005577 Bacteria 52422
25 Ga0068856_100002233 3300005614 Bacteria 20000
26 Ga0068856_100017153 3300005614 Bacteria 7017
27 Ga0068864_100000104 3300005618 Bacteria 82096
28 Ga0068864_100004881 3300005618 Bacteria 10981
29 Ga0068858_100022827 3300005842 Bacteria 5836
30 Ga0068860_100018061 3300005843 Bacteria 6868
31 Ga0068862_100021375 3300005844 Bacteria 5406
32 Ga0070717_10007582 3300006028 Bacteria 8064
33 Ga0070717_10010092 3300006028 Bacteria 7112
34 Ga0070717_10026436 3300006028 Bacteria 4629
35 Ga0075366_10005162 3300006195 Bacteria 7067
36 Ga0075436_100000081 3300006914 Bacteria 55210
37 Ga0111539_10010863 3300009094 Bacteria 11460
38 Ga0105245_10010394 3300009098 Bacteria 8106
39 Ga0105247_10010751 3300009101 Bacteria 5528
40 Ga0105248_10021403 3300009177 Bacteria 7165
41 Ga0105238_10044870 3300009551 Bacteria 4467
42 Ga0105249_10027704 3300009553 Bacteria 5113
43 Ga0105239_10049803 3300010375 Bacteria 4594
44 Ga0157369_10000131 3300013105 Bacteria 107900
45 Ga0157369_10041124 3300013105 Bacteria 5046
46 Ga0157374_10002417 3300013296 Bacteria 15756
47 Ga0157374_10052833 3300013296 Bacteria 3786
48 Ga0157378_10000107 3300013297 Bacteria 79357
49 Ga0157375_10000053 3300013308 Bacteria 128672
50 Ga0163163_10008412 3300014325 Bacteria 9167
51 Ga0157379_10002834 3300014968 Bacteria 14617
52 Ga0157379_10006643 3300014968 Bacteria 9980
53 Ga0207642_10003024 3300025899 Bacteria 5273
54 Ga0207654_10017552 3300025911 Bacteria 3744
55 Ga0207695_10002642 3300025913 Bacteria 26207
56 Ga0207695_10040745 3300025913 Bacteria 4976
57 Ga0207693_10003156 3300025915 Bacteria 14170
58 Ga0207646_10006723 3300025922 Bacteria 11843
59 Ga0207687_10003586 3300025927 Bacteria 10451
60 Ga0207687_10016610 3300025927 Bacteria 4835
61 Ga0207664_10000275 3300025929 Bacteria 38913
62 Ga0207664_10000488 3300025929 Bacteria 28266
63 Ga0207706_10000339 3300025933 Bacteria 50795
64 Ga0207691_10006619 3300025940 Bacteria 11185
65 Ga0207711_10008809 3300025941 Bacteria 8437
66 Ga0207661_10039871 3300025944 Bacteria 3689
67 Ga0207667_10008742 3300025949 Bacteria 12005
68 Ga0207667_10018632 3300025949 Bacteria 7781
69 Ga0207712_10018838 3300025961 Bacteria 4501
70 Ga0207640_10019386 3300025981 Bacteria 4018
71 Ga0207703_10005726 3300026035 Bacteria 9958
72 Ga0207678_10000921 3300026067 Bacteria 26925
73 Ga0207641_10016363 3300026088 Bacteria 6072
74 Ga0207676_10000090 3300026095 Bacteria 82212
75 Ga0207676_10027129 3300026095 Bacteria 4263
76 Ga0207674_10000126 3300026116 Bacteria 88965
77 Ga0207674_10029137 3300026116 Bacteria 5817
78 Ga0207675_100007310 3300026118 Bacteria 10442
79 Ga0207428_10000633 3300027907 Bacteria 41339
80 Ga0268266_10002206 3300028379 Bacteria 21305
81 Ga0268266_10020762 3300028379 Bacteria 5600
82 Ga0268264_10013786 3300028381 Bacteria 6647
83 Ga0265338_10015583 3300028800 Bacteria 8332
84 Ga0316578_10000943 3300031728 Bacteria 11060
85 Ga0316577_10000643 3300031733 Bacteria 14538
86 Ga0316580_10002119 3300032139 Bacteria 5398
87 Ga0373926_0003966 3300035083 Bacteria 4835
88 Ga0373928_0000437 3300035084 Bacteria 8294
89 Ga0373936_0002144 3300035113 Bacteria 7347
90 Ga0373945_0001489 3300035116 Bacteria 7162
91 Ga0373956_0003173 3300035119 Bacteria 6649
92 Ga0373943_0000018 3300035170 Bacteria 55302
93 Ga0373955_0014844 3300035172 Bacteria 3801
94 Ga0373924_0000128 3300035410 Bacteria 22024
95 Ga0373927_0000395 3300035695 Bacteria 33782
96 Ga0373927_0005402 3300035695 Bacteria 8822
97 Ga0373933_0000870 3300035724 Bacteria 18513
98 Ga0373933_0016136 3300035724 Bacteria 4173
99 Ga0373947_0001731 3300035725 Bacteria 13353
100 Ga0373937_0000065 3300036401 Bacteria 95014
101 Ga0373937_0001189 3300036401 Bacteria 21824
102 Ga0373937_0001290 3300036401 Bacteria 20976
103 Ga0373937_0026654 3300036401 Bacteria 5222
104 Ga0316584_0029973 3300036712 Bacteria 4018
105 Ga0373925_0001275 3300037068 Bacteria 22243
106 Ga0373925_0002270 3300037068 Bacteria 15571
107 Ga0451577_0000062 3300042876 Bacteria 267945
108 Ga0451577_0000426 3300042876 Bacteria 75695
109 Ga0451577_0000432 3300042876 Bacteria 74811
110 Ga0451577_0000518 3300042876 Bacteria 64409
111 Ga0451577_0000848 3300042876 Bacteria 45607
112 Ga0451577_0001275 3300042876 Bacteria 34677
113 Ga0451577_0007023 3300042876 Bacteria 11105
114 Ga0451577_0060016 3300042876 Bacteria 3391
115 Ga0453683_0000012 3300044673 Bacteria 376341
116 Ga0453683_0000041 3300044673 Bacteria 219754
117 Ga0453683_0000080 3300044673 Bacteria 145649
118 Ga0453683_0000455 3300044673 Bacteria 47044
119 Ga0453683_0005583 3300044673 Bacteria 8746
120 Ga0453684_0000104 3300044712 Bacteria 365431
121 Ga0453684_0000123 3300044712 Bacteria 339304
122 Ga0453684_0000442 3300044712 Bacteria 168993
123 Ga0453684_0000521 3300044712 Bacteria 147189
124 Ga0453684_0000562 3300044712 Bacteria 139891
125 Ga0453684_0000903 3300044712 Bacteria 99008
126 Ga0453684_0001364 3300044712 Bacteria 70934
127 Ga0453684_0017906 3300044712 Bacteria 10930
128 Ga0453684_0026767 3300044712 Bacteria 8310
129 Ga0453684_0029504 3300044712 Bacteria 7785
130 Ga0453684_0038220 3300044712 Bacteria 6566
131 Ga0453684_0039138 3300044712 Bacteria 6468
132 Ga0453684_0055480 3300044712 Bacteria 5151
133 Ga0451576_0000026 3300045051 Bacteria 427585
134 Ga0451576_0002815 3300045051 Bacteria 25054
135 Ga0451576_0013691 3300045051 Bacteria 9060
136 Ga0495603_0007168 3300046455 Bacteria 6696
137 Ga0495629_0008272 3300046459 Bacteria 7649
138 Ga0495651_0000679 3300046462 Bacteria 26438
139 Ga0495580_0000206 3300046472 Bacteria 45509
140 Ga0495580_0000263 3300046472 Bacteria 42063
141 Ga0495580_0002564 3300046472 Bacteria 15830
142 Ga0495580_0004039 3300046472 Bacteria 12386
143 Ga0495580_0004530 3300046472 Bacteria 11670
144 Ga0495580_0005835 3300046472 Bacteria 10101
145 Ga0495580_0017636 3300046472 Bacteria 5332
146 Ga0495582_0013457 3300046473 Bacteria 4504
147 Ga0495639_0004087 3300046475 Bacteria 6257
148 Ga0495608_0011588 3300046511 Bacteria 6135
149 Ga0495608_0019815 3300046511 Bacteria 4626
150 Ga0495628_0000057 3300046516 Bacteria 89094
151 Ga0495628_0008716 3300046516 Bacteria 8678
152 Ga0495628_0033524 3300046516 Bacteria 4138
153 Ga0495630_0029104 3300046517 Bacteria 4106
154 Ga0495666_0004572 3300046526 Bacteria 6997
155 Ga0495652_0000290 3300046529 Bacteria 59672
156 Ga0495587_0000140 3300046536 Bacteria 53914
157 Ga0495587_0000712 3300046536 Bacteria 22252
158 Ga0495587_0000811 3300046536 Bacteria 20846
159 Ga0495645_0015117 3300046543 Bacteria 5486
160 Ga0495657_0001379 3300046675 Bacteria 21087
161 Ga0495657_0011496 3300046675 Bacteria 6616
162 Ga0495623_0010623 3300046679 Bacteria 5958
163 Ga0495646_0013903 3300046680 Bacteria 5116
164 Ga0495613_0003714 3300046689 Bacteria 11451
165 Ga0495613_0009933 3300046689 Bacteria 7074
166 Ga0495613_0028416 3300046689 Bacteria 4159
167 Ga0495600_0005787 3300046809 Bacteria 7469
168 Ga0495600_0011535 3300046809 Bacteria 5510
169 Ga0495581_0014382 3300047315 Bacteria 4591
170 Ga0495604_0000560 3300047317 Bacteria 32727
171 Ga0495604_0010880 3300047317 Bacteria 7224
172 Ga0495604_0037547 3300047317 Bacteria 3814
173 Ga0495674_0007735 3300047319 Bacteria 10264
174 Ga0495674_0016052 3300047319 Bacteria 6989
175 Ga0495680_0001335 3300047322 Bacteria 26861
176 Ga0495680_0030752 3300047322 Bacteria 4379
177 Ga0495675_0000011 3300047444 Bacteria 152733
178 Ga0495675_0001957 3300047444 Bacteria 12290
179 Ga0495675_0016705 3300047444 Bacteria 4641
180 Ga0495593_0025414 3300047673 Bacteria 3278
181 Ga0495602_0002174 3300048088 Bacteria 19788
182 Ga0495602_0002245 3300048088 Bacteria 19507
183 Ga0496102_0015730 3300048905 Bacteria 6591
184 Ga0496104_0014322 3300048907 Bacteria 7161
185 Ga0496108_0026242 3300048911 Bacteria 4804
186 Ga0496110_0012101 3300048913 Bacteria 7088
187 Ga0496112_0022390 3300048915 Bacteria 6023
188 Ga0496113_0008069 3300048916 Bacteria 6833
189 Ga0501039_0020312 3300049575 Bacteria 5091
190 Ga0501042_0014997 3300049578 Bacteria 5299
191 Ga0501071_0013190 3300049587 Bacteria 5627
192 Ga0501072_0017448 3300049588 Bacteria 5515
193 Ga0501075_0022005 3300049591 Bacteria 4654
194 Ga0501076_0003079 3300049592 Bacteria 11614
195 Ga0501077_0025497 3300049593 Bacteria 3755
196 Ga0501079_0016176 3300049741 Bacteria 5701
197 nmdc:mga0k408_4331_c1 3300050493 Bacteria 7537
198 nmdc:mga08y16_5606_c1 3300050511 Bacteria 13149
199 Ga0495612_0006011 3300053078 Bacteria 5000
200 Ga0501082_0027275 3300060353 Bacteria 4918
201 Ga0068868_100012811
202 Ga0070666_10012307
203 Ga0070682_100016712
204 Ga0070661_100027813
205 Ga0070669_100025507
206 Ga0070667_100036585
207 Ga0070709_10010568
208 Ga0070709_10019159
209 Ga0070714_100000065
210 Ga0070714_100000817
211 Ga0070714_100001981
212 Ga0070714_100012527
213 Ga0070713_100000668
214 Ga0070713_100006016
215 Ga0070713_100008525
216 Ga0070711_100002761
217 Ga0070708_100008889
218 Ga0070663_100004139
219 Ga0070707_100003194
220 Ga0070684_100001056
221 Ga0070684_100019022
222 Ga0070672_100000384
223 Ga0070665_100000931
224 Ga0068857_100000091
225 Ga0068856_100002233
226 Ga0068856_100017153
227 Ga0068864_100000104
228 Ga0068864_100004881
229 Ga0068858_100022827
230 Ga0068860_100018061
231 Ga0068862_100021375
232 Ga0070717_10007582
233 Ga0070717_10010092
234 Ga0070717_10026436
235 Ga0075366_10005162
236 Ga0075436_100000081
237 Ga0111539_10010863
238 Ga0105245_10010394
239 Ga0105247_10010751
240 Ga0105248_10021403
241 Ga0105238_10044870
242 Ga0105249_10027704
243 Ga0105239_10049803
244 Ga0157369_10000131
245 Ga0157369_10041124
246 Ga0157374_10002417
247 Ga0157374_10052833
248 Ga0157378_10000107
249 Ga0157375_10000053
250 Ga0163163_10008412
251 Ga0157379_10002834
252 Ga0157379_10006643
253 Ga0207642_10003024
254 Ga0207654_10017552
255 Ga0207695_10002642
256 Ga0207695_10040745
257 Ga0207693_10003156
258 Ga0207646_10006723
259 Ga0207687_10003586
260 Ga0207687_10016610
261 Ga0207664_10000275
262 Ga0207664_10000488
263 Ga0207706_10000339
264 Ga0207691_10006619
265 Ga0207711_10008809
266 Ga0207661_10039871
267 Ga0207667_10008742
268 Ga0207667_10018632
269 Ga0207712_10018838
270 Ga0207640_10019386
271 Ga0207703_10005726
272 Ga0207678_10000921
273 Ga0207641_10016363
274 Ga0207676_10000090
275 Ga0207676_10027129
276 Ga0207674_10000126
277 Ga0207674_10029137
278 Ga0207675_100007310
279 Ga0207428_10000633
280 Ga0268266_10002206
281 Ga0268266_10020762
282 Ga0268264_10013786
283 Ga0265338_10015583
284 Ga0316578_10000943
285 Ga0316577_10000643
286 Ga0316580_10002119
287 Ga0373926_0003966
288 Ga0373928_0000437
289 Ga0373936_0002144
290 Ga0373945_0001489
291 Ga0373956_0003173
292 Ga0373943_0000018
293 Ga0373955_0014844
294 Ga0373924_0000128
295 Ga0373927_0000395
296 Ga0373927_0005402
297 Ga0373933_0000870
298 Ga0373933_0016136
299 Ga0373947_0001731
300 Ga0373937_0000065
301 Ga0373937_0001189
302 Ga0373937_0001290
303 Ga0373937_0026654
304 Ga0316584_0029973
305 Ga0373925_0001275
306 Ga0373925_0002270
307 Ga0451577_0000062
308 Ga0451577_0000426
309 Ga0451577_0000432
310 Ga0451577_0000518
311 Ga0451577_0000848
312 Ga0451577_0001275
313 Ga0451577_0007023
314 Ga0451577_0060016
315 Ga0453683_0000012
316 Ga0453683_0000041
317 Ga0453683_0000080
318 Ga0453683_0000455
319 Ga0453683_0005583
320 Ga0453684_0000104
321 Ga0453684_0000123
322 Ga0453684_0000442
323 Ga0453684_0000521
324 Ga0453684_0000562
325 Ga0453684_0000903
326 Ga0453684_0001364
327 Ga0453684_0017906
328 Ga0453684_0026767
329 Ga0453684_0029504
330 Ga0453684_0038220
331 Ga0453684_0039138
332 Ga0453684_0055480
333 Ga0451576_0000026
334 Ga0451576_0002815
335 Ga0451576_0013691
336 Ga0495603_0007168
337 Ga0495629_0008272
338 Ga0495651_0000679
339 Ga0495580_0000206
340 Ga0495580_0000263
341 Ga0495580_0002564
342 Ga0495580_0004039
343 Ga0495580_0004530
344 Ga0495580_0005835
345 Ga0495580_0017636
346 Ga0495582_0013457
347 Ga0495639_0004087
348 Ga0495608_0011588
349 Ga0495608_0019815
350 Ga0495628_0000057
351 Ga0495628_0008716
352 Ga0495628_0033524
353 Ga0495630_0029104
354 Ga0495666_0004572
355 Ga0495652_0000290
356 Ga0495587_0000140
357 Ga0495587_0000712
358 Ga0495587_0000811
359 Ga0495645_0015117
360 Ga0495657_0001379
361 Ga0495657_0011496
362 Ga0495623_0010623
363 Ga0495646_0013903
364 Ga0495613_0003714
365 Ga0495613_0009933
366 Ga0495613_0028416
367 Ga0495600_0005787
368 Ga0495600_0011535
369 Ga0495581_0014382
370 Ga0495604_0000560
371 Ga0495604_0010880
372 Ga0495604_0037547
373 Ga0495674_0007735
374 Ga0495674_0016052
375 Ga0495680_0001335
376 Ga0495680_0030752
377 Ga0495675_0000011
378 Ga0495675_0001957
379 Ga0495675_0016705
380 Ga0495593_0025414
381 Ga0495602_0002174
382 Ga0495602_0002245
383 Ga0496102_0015730
384 Ga0496104_0014322
385 Ga0496108_0026242
386 Ga0496110_0012101
387 Ga0496112_0022390
388 Ga0496113_0008069
389 Ga0501039_0020312
390 Ga0501042_0014997
391 Ga0501071_0013190
392 Ga0501072_0017448
393 Ga0501075_0022005
394 Ga0501076_0003079
395 Ga0501077_0025497
396 Ga0501079_0016176
397 nmdc:mga0k408_4331_c1
398 nmdc:mga08y16_5606_c1
399 Ga0495612_0006011
400 Ga0501082_0027275

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

22

1073

0.88

PF02355

SecD_SecF

Protein export membrane protein

345

518

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
8f4n-assembly1.cif.gz_A dimer of aminoglycoside efflux pump acrd 0.8666 25 1046
8f4n-assembly1.cif.gz_A dimer of aminoglycoside efflux pump acrd 0.8608 25 1046
2v50-assembly1.cif.gz_C the missing part of the bacterial mexab-oprm system: structural determination of the multidrug exporter mexb 0.8604 25 1045
6zof-assembly1.cif.gz_C fusidic acid binding to the tm7/tm8 groove of acrb-f380a t protomer 0.8562 25 1046
7rr7-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.856 25 1047
ID Description Score Start End Superfamily
af_P38054_46_113_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9769 66 130 3.30.70.1430
af_Q2FVZ5_39_104_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9716 64 121 3.30.70.1430
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9455 901 1049 1.20.1640.10
3w9iC05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.926 891 1045 1.20.1640.10
3d9bA05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9219 897 1046 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A6I0KHH2-F1-model_v4 Efflux RND transporter permease subunit 0.9658 880 1045 GO:0005886
GO:0042910
AF-A0A523LNL0-F1-model_v4 Efflux RND transporter permease subunit 0.9622 886 1050 GO:0005886
GO:0042910
AF-A0A2M7QN21-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9548 64 149 GO:0005886
GO:0042910
AF-A0A645GKF0-F1-model_v4 Multidrug resistance protein MdtC 0.9419 880 1050 GO:0005886
GO:0042910
AF-A0A3B8Q091-F1-model_v4 Multidrug transporter AcrB 0.9358 610 1050 GO:0005886
GO:0042910

Map