F305497

General Info

Members Datasets Scaffolds Average Seq Length
199 136 193 760

Family's Representative Sequence

Representative Sequence 3300005458|Ga0070681_10011731|Ga0070681_100117316
Length 822
Sequence MTTKRKRGPRKNGKPWPNNIGPWLEKLPADKRAQLFQRAARAQWGPEKKEPKKADDGPWVWPIDLDRYDRSSALTPLEKDMLGRYAEAYRFYRYGRTMDFGETLDRLVKPLNDALDYTGIRTLFRKYVLLFFLREMAERRRAFWGWTTDEWIETIERHKKVEYQHVIAVAYLLCGFSDLHRLSKNHIVYVVLARKVFGREYMKVVADRVQGLLREWGYMRTGTAALVLRTIFEALLYRRCPHLDQLKIEDLKEVIARRPPRTGSYCVVALSRVLASMGTVPEAMEIKRPVKDKKLSPALTLGVPAEWRRLSRIWYDRATYSRKNRNKSYYFLLNVGRWLGKVHPEIISPADWTRELAAEAVSVICQWHGGDWCSVDPVHVKSRGQILAPSTRAGRISILRVFFRDIQEWELIPRRFDPMRSMVTPKSILALVGPNPRAIADDVWAKLIWAGLNLTIDDLPKKGDPRHVSFPSTGYPIEMTRALAITWLFAGLRSNEIVRLRLGCIRWQRDDVTVPGTGDPLPANAVCLLDVPVNKTSTAFTKPVDRIVGEAIAAWENVRPRGAKLPDPKTGELVDFLFLIRLTRVGMGYLNKRLIPALCKKAGVPFADVRGNITSHRARSTIASQLYNAREPMTLFELQEWLGHSTPTATQHYAKITPLKVAKSYADAGYFARNLRAIEVLVDQDVVRSGLAATEPWKFYDLGHGYCTYDFFDQCQHRMACAKCDFYMPKDSTAALLLEGRTHLLRLLQEIPLGEAEQAAVEDGVAAYENLLSKLSDVPTPAGPTPRQLGAELVQITSVRPALPASTLTESRSHGAGSREPD

Samples

Sample ID Description Type Environment
1 2010549000 Rice roots microbial communities from plants at IRRI, Los Banos, Philippines - endophytes Metagenome Endosphere
2 2513237083 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
3 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
4 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
44 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
45 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
46 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
61 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
63 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
64 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
65 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
66 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
67 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
68 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
69 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
70 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
71 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
72 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
73 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
74 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
75 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
77 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
78 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
81 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
82 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
83 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
84 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
87 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
88 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
89 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
90 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
91 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
92 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
93 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
94 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
95 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
96 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
97 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
98 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
99 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
100 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
101 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
102 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
103 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
104 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
105 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
108 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
109 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
110 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
111 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
112 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
113 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
114 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
115 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
116 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
117 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
118 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
119 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
120 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
121 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
122 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
126 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
132 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
133 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
134 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
135 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
136 8003955200 Paraburkholderia mimosarum LMG 23256 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.98
Metatranscriptomes 0.5
Isolates 2.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.5
Nodule 1.01
Rhizoplane 2.01
Rhizosphere 86.93
Stem 0
Stem Tuber 0
Unclassified 9.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 RicEn_C366 2010549000 Bacteria 8373
2 rootH2_10040842 3300003320 Bacteria 8842
3 rootH2_10052425 3300003320 Bacteria 6947
4 rootH2_10136246 3300003320 Bacteria 8721
5 Ga0070683_100042061 3300005329 Bacteria 4207
6 Ga0070668_100052340 3300005347 Bacteria 3147
7 Ga0070674_100022696 3300005356 Bacteria 4049
8 Ga0070714_100085258 3300005435 Bacteria 2758
9 Ga0070713_100013962 3300005436 Bacteria 5947
10 Ga0070713_100094933 3300005436 Plasmid 2572
11 Ga0070711_100025716 3300005439 Bacteria 3853
12 Ga0070708_100014451 3300005445 Bacteria 6496
13 Ga0070708_100020635 3300005445 Bacteria 5560
14 Ga0070662_100073623 3300005457 Bacteria 2524
15 Ga0070681_10011731 3300005458 Bacteria 8682
16 Ga0070706_100008123 3300005467 Bacteria 9789
17 Ga0070706_100011425 3300005467 Bacteria 8251
18 Ga0070706_100014769 3300005467 Bacteria 7216
19 Ga0070706_100025792 3300005467 Bacteria 5409
20 Ga0070706_100041968 3300005467 Bacteria 4225
21 Ga0070706_100046042 3300005467 Plasmid 4027
22 Ga0070706_100048862 3300005467 Bacteria 3904
23 Ga0070706_100102493 3300005467 Bacteria 2661
24 Ga0070707_100006388 3300005468 Bacteria 10960
25 Ga0070707_100018006 3300005468 Bacteria 6645
26 Ga0070707_100022435 3300005468 Bacteria 5968
27 Ga0070707_100026999 3300005468 Bacteria 5459
28 Ga0070707_100044742 3300005468 Bacteria 4238
29 Ga0070707_100046196 3300005468 Plasmid 4167
30 Ga0070698_100011680 3300005471 Bacteria 9315
31 Ga0070698_100028247 3300005471 Bacteria 5828
32 Ga0070698_100030885 3300005471 Bacteria 5555
33 Ga0070698_100045925 3300005471 Bacteria 4468
34 Ga0070698_100065783 3300005471 Bacteria 3650
35 Ga0070698_100076285 3300005471 Unclassified 3354
36 Ga0070699_100000019 3300005518 Bacteria 185937
37 Ga0070699_100011050 3300005518 Bacteria 7807
38 Ga0070679_100003223 3300005530 Bacteria 14899
39 Ga0070704_100013271 3300005549 Bacteria 5109
40 Ga0068854_100063865 3300005578 Bacteria 2674
41 Ga0068856_100008115 3300005614 Bacteria 10249
42 Ga0068859_100066360 3300005617 Bacteria 3643
43 Ga0068858_100023913 3300005842 Bacteria 5693
44 Ga0068858_100122056 3300005842 Bacteria 2437
45 Ga0068862_100062102 3300005844 Bacteria 3213
46 Ga0081538_10045926 3300005981 Bacteria 2701
47 Ga0070717_10005250 3300006028 Bacteria 9439
48 Ga0070717_10010975 3300006028 Bacteria 6859
49 Ga0097621_100011632 3300006237 Bacteria 6489
50 Ga0068871_100011534 3300006358 Bacteria 6482
51 Ga0075428_100073918 3300006844 Bacteria 3723
52 Ga0075430_100021281 3300006846 Bacteria 5514
53 Ga0068865_100029166 3300006881 Bacteria 3658
54 Ga0097620_100066360 3300006931 Bacteria 3643
55 Ga0105240_10055483 3300009093 Bacteria 4960
56 Ga0114129_10044185 3300009147 Bacteria 6268
57 Ga0114129_10048339 3300009147 Bacteria 5977
58 Ga0105248_10127609 3300009177 Bacteria 2870
59 Ga0105238_10008709 3300009551 Bacteria 10150
60 Ga0157369_10042455 3300013105 Bacteria 4961
61 Ga0157374_10001403 3300013296 Bacteria 20425
62 Ga0157378_10053057 3300013297 Bacteria 3609
63 Ga0157372_10024568 3300013307 Bacteria 6548
64 Ga0157379_10068987 3300014968 Bacteria 3161
65 Ga0213873_10001113 3300021358 Bacteria 4386
66 Ga0213876_10003890 3300021384 Bacteria 8438
67 Ga0213876_10019850 3300021384 Bacteria 3549
68 Ga0213875_10026094 3300021388 Bacteria 2781
69 Ga0207684_10012389 3300025910 Bacteria 7419
70 Ga0207684_10013091 3300025910 Bacteria 7180
71 Ga0207684_10015230 3300025910 Bacteria 6623
72 Ga0207684_10027652 3300025910 Plasmid 4830
73 Ga0207684_10041559 3300025910 Plasmid 3897
74 Ga0207684_10050674 3300025910 Bacteria 3522
75 Ga0207707_10002626 3300025912 Bacteria 16094
76 Ga0207695_10019539 3300025913 Bacteria 7795
77 Ga0207646_10002541 3300025922 Bacteria 21533
78 Ga0207646_10009267 3300025922 Bacteria 9747
79 Ga0207646_10017756 3300025922 Bacteria 6646
80 Ga0207646_10020842 3300025922 Bacteria 6067
81 Ga0207694_10016086 3300025924 Bacteria 5644
82 Ga0207704_10037871 3300025938 Bacteria 2790
83 Ga0207661_10029539 3300025944 Bacteria 4212
84 Ga0207667_10000983 3300025949 Bacteria 36450
85 Ga0207677_10060304 3300026023 Bacteria 2621
86 Ga0207703_10009482 3300026035 Bacteria 7640
87 Ga0207639_10038546 3300026041 Bacteria 3555
88 Ga0207702_10002381 3300026078 Bacteria 17950
89 Ga0207648_10092133 3300026089 Bacteria 2650
90 Ga0207683_10027971 3300026121 Bacteria 4873
91 Ga0207683_10093693 3300026121 Bacteria 2676
92 Ga0307511_10002083 3300030521 Bacteria 20955
93 Ga0265770_1000187 3300030878 Bacteria 8143
94 Ga0265316_10001573 3300031344 Bacteria 24403
95 Ga0307507_10022664 3300033179 Bacteria 6926
96 Ga0307507_10036464 3300033179 Bacteria 5025
97 Ga0373926_0001190 3300035083 Bacteria 7771
98 Ga0373944_0003221 3300035089 Bacteria 4193
99 Ga0373923_0000219 3300035111 Bacteria 11953
100 Ga0373936_0000297 3300035113 Bacteria 16666
101 Ga0373936_0004606 3300035113 Bacteria 5217
102 Ga0373943_0008882 3300035170 Bacteria 4501
103 Ga0373946_0001245 3300035171 Bacteria 8812
104 Ga0373955_0001266 3300035172 Bacteria 10742
105 Ga0373942_0007857 3300035207 Bacteria 2480
106 Ga0373924_0000401 3300035410 Bacteria 13289
107 Ga0373927_0007059 3300035695 Bacteria 7618
108 Ga0373947_0024025 3300035725 Bacteria 3549
109 Ga0373937_0011617 3300036401 Bacteria 7730
110 Ga0373925_0037145 3300037068 Bacteria 3595
111 Ga0436364_0653578 3300037853 Bacteria 3043
112 Ga0436365_0217432 3300039437 Bacteria 8186
113 Ga0436365_0904925 3300039437 Bacteria 3932
114 Ga0436361_0074142 3300039447 Bacteria 2305
115 Ga0436363_0238471 3300039450 Bacteria 3997
116 Ga0436362_0439408 3300039453 Bacteria 5384
117 Ga0451853_2545745 3300041512 Bacteria 5649
118 Ga0451853_3006979 3300041512 Bacteria 6288
119 Ga0439464_0004019 3300042439 Bacteria 3744
120 Ga0466957_0017129 3300044842 Bacteria 4241
121 Ga0466967_0049522 3300045976 Bacteria 3674
122 Ga0495603_0004388 3300046455 Bacteria 8406
123 Ga0495629_0004870 3300046459 Bacteria 10074
124 Ga0495629_0027833 3300046459 Bacteria 4015
125 Ga0495651_0006344 3300046462 Bacteria 9046
126 Ga0495651_0015313 3300046462 Bacteria 5928
127 Ga0495653_0011742 3300046463 Bacteria 7153
128 Ga0495580_0017738 3300046472 Bacteria 5314
129 Ga0495582_0003662 3300046473 Bacteria 8657
130 Ga0495662_0002554 3300046476 Bacteria 9189
131 Ga0495662_0012541 3300046476 Bacteria 4135
132 Ga0495664_0001980 3300046477 Bacteria 10919
133 Ga0495664_0021138 3300046477 Bacteria 3759
134 Ga0495608_0008282 3300046511 Bacteria 7298
135 Ga0495628_0016144 3300046516 Bacteria 6230
136 Ga0495628_0045424 3300046516 Bacteria 3493
137 Ga0495630_0021907 3300046517 Bacteria 4719
138 Ga0495644_0011357 3300046523 Bacteria 3430
139 Ga0495648_0017067 3300046524 Bacteria 5206
140 Ga0495666_0001939 3300046526 Bacteria 10200
141 Ga0495666_0024180 3300046526 Bacteria 3002
142 Ga0495652_0013264 3300046529 Bacteria 7419
143 Ga0495665_0001511 3300046531 Bacteria 12430
144 Ga0495665_0024555 3300046531 Bacteria 3238
145 Ga0495640_0003510 3300046533 Bacteria 12606
146 Ga0495640_0052004 3300046533 Bacteria 2814
147 Ga0495586_0005218 3300046535 Bacteria 6955
148 Ga0495587_0011831 3300046536 Bacteria 5516
149 Ga0495645_0007572 3300046543 Bacteria 7554
150 Ga0495668_0017212 3300046616 Bacteria 4197
151 Ga0495634_0007432 3300046642 Bacteria 8231
152 Ga0495634_0044826 3300046642 Bacteria 2991
153 Ga0495635_0071382 3300046663 Bacteria 2380
154 Ga0495635_0077978 3300046663 Bacteria 2269
155 Ga0495657_0007031 3300046675 Bacteria 8727
156 Ga0495599_0019852 3300046678 Bacteria 4185
157 Ga0495623_0009612 3300046679 Bacteria 6278
158 Ga0495646_0019367 3300046680 Bacteria 4309
159 Ga0495646_0027911 3300046680 Bacteria 3538
160 Ga0495658_0003796 3300046683 Bacteria 7480
161 Ga0495624_0007470 3300046690 Bacteria 7670
162 Ga0495624_0028308 3300046690 Bacteria 3664
163 Ga0495581_0005224 3300047315 Bacteria 7512
164 Ga0495674_0014563 3300047319 Bacteria 7359
165 Ga0495675_0002526 3300047444 Bacteria 10961
166 Ga0495675_0004465 3300047444 Bacteria 8472
167 Ga0495684_0001158 3300047471 Bacteria 21192
168 Ga0495684_0007343 3300047471 Bacteria 8540
169 Ga0495684_0008192 3300047471 Bacteria 8090
170 Ga0495593_0004172 3300047673 Bacteria 8596
171 Ga0495593_0007843 3300047673 Bacteria 6220
172 Ga0495602_0000329 3300048088 Bacteria 43833
173 Ga0495602_0005046 3300048088 Bacteria 13820
174 Ga0496102_0078472 3300048905 Bacteria 3040
175 Ga0496108_0046449 3300048911 Bacteria 3628
176 Ga0496109_0068220 3300048912 Bacteria 3260
177 Ga0496112_0017024 3300048915 Bacteria 6824
178 Ga0496126_0001843 3300048929 Bacteria 30918
179 Ga0501040_0006267 3300049576 Bacteria 7723
180 Ga0501042_0000293 3300049578 Bacteria 24726
181 nmdc:mga05p37_14440_c1 3300050507 Bacteria 9480
182 nmdc:mga05p37_9976_c1 3300050507 Bacteria 11279
183 nmdc:mga0qj67_32170_c1 3300050509 Bacteria 4090
184 nmdc:mga0qj67_44718_c1 3300050509 Bacteria 3491
185 nmdc:mga0qj67_7646_c2 3300050509 Bacteria 4833
186 nmdc:mga06r32_41683_c1 3300050510 Bacteria 4363
187 nmdc:mga08x19_36555_c1 3300050514 Unclassified 3111
188 Ga0495601_0001931 3300053077 Bacteria 11600
189 Ga0495601_0012633 3300053077 Bacteria 5065
190 Ga0495612_0005050 3300053078 Bacteria 5464
191 Ga0495612_0007249 3300053078 Bacteria 4537
192 Ga0495619_0003558 3300053085 Bacteria 10050
193 Ga0501084_0008587 3300054114 Bacteria 8448

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005468 Ga0070707_100022435 Ga0070707_1000224352 583
2 3300025922 Ga0207646_10009267 Ga0207646_100092672 583
3 3300046663 Ga0495635_0071382 Ga0495635_0071382_123_2024 593
4 3300005578 Ga0068854_100063865 Ga0068854_1000638651 594
5 3300039447 Ga0436361_0074142 Ga0436361_0074142_43_1923 594
6 3300046533 Ga0495640_0052004 Ga0495640_0052004_863_2767 594
7 3300041512 Ga0451853_2545745 Ga0451853_2545745_3066_4970 596
8 3300046663 Ga0495635_0077978 Ga0495635_0077978_168_2258 635
9 3300047471 Ga0495684_0008192 Ga0495684_0008192_3207_5216 643
10 3300048088 Ga0495602_0000329 Ga0495602_0000329_1771_3780 643
11 3300047444 Ga0495675_0002526 Ga0495675_0002526_8525_10531 644
12 3300047471 Ga0495684_0001158 Ga0495684_0001158_17273_19279 644
13 3300048088 Ga0495602_0000329 Ga0495602_0000329_8882_10888 644
14 3300005842 Ga0068858_100023913 Ga0068858_1000239132 648
15 3300046472 Ga0495580_0017738 Ga0495580_0017738_35_2116 650
16 3300046642 Ga0495634_0007432 Ga0495634_0007432_35_2116 650
17 3300005467 Ga0070706_100014769 Ga0070706_1000147694 651
18 3300025910 Ga0207684_10013091 Ga0207684_100130913 651
19 3300030521 Ga0307511_10002083 Ga0307511_100020837 653
20 3300050507 nmdc:mga05p37_9976_c1 nmdc:mga05p37_9976_c1_2710_4833 654
21 3300013297 Ga0157378_10053057 Ga0157378_100530571 657
22 3300026121 Ga0207683_10027971 Ga0207683_100279712 657
23 3300005518 Ga0070699_100000019 Ga0070699_10000001927 681
24 3300026035 Ga0207703_10009482 Ga0207703_100094827 687
25 3300046477 Ga0495664_0021138 Ga0495664_0021138_1528_3672 687
26 3300046516 Ga0495628_0045424 Ga0495628_0045424_1189_3333 687
27 3300046642 Ga0495634_0044826 Ga0495634_0044826_806_2950 687
28 iso_pu_bacteria 2904615490 2904616113 690
29 iso_pu_bacteria 2904615490 2904618360 690
30 3300005468 Ga0070707_100044742 Ga0070707_1000447422 692
31 3300009147 Ga0114129_10044185 Ga0114129_100441852 694
32 3300003320 rootH2_10136246 rootH2_101362468 696
33 3300005436 Ga0070713_100094933 Ga0070713_1000949332 696
34 3300046462 Ga0495651_0015313 Ga0495651_0015313_1505_3799 696
35 3300005435 Ga0070714_100085258 Ga0070714_1000852581 699
36 3300005439 Ga0070711_100025716 Ga0070711_1000257161 699
37 3300005467 Ga0070706_100011425 Ga0070706_1000114254 699
38 3300005467 Ga0070706_100025792 Ga0070706_1000257922 699
39 3300025910 Ga0207684_10012389 Ga0207684_100123896 699
40 3300025910 Ga0207684_10015230 Ga0207684_100152306 699
41 3300009177 Ga0105248_10127609 Ga0105248_101276092 701
42 3300048905 Ga0496102_0078472 Ga0496102_0078472_27_2279 701
43 3300005471 Ga0070698_100065783 Ga0070698_1000657833 702
44 3300025910 Ga0207684_10041559 Ga0207684_100415592 702
45 3300050514 nmdc:mga08x19_36555_c1 nmdc:mga08x19_36555_c1_190_2412 702
46 3300026121 Ga0207683_10093693 Ga0207683_100936932 703
47 3300048911 Ga0496108_0046449 Ga0496108_0046449_1237_3501 703
48 3300050509 nmdc:mga0qj67_44718_c1 nmdc:mga0qj67_44718_c1_808_3123 703
49 3300005467 Ga0070706_100041968 Ga0070706_1000419683 704
50 3300005471 Ga0070698_100030885 Ga0070698_1000308853 704
51 3300003320 rootH2_10052425 rootH2_100524253 706
52 3300039450 Ga0436363_0238471 Ga0436363_0238471_1435_3666 708
53 3300035207 Ga0373942_0007857 Ga0373942_0007857_13_2247 709
54 3300035725 Ga0373947_0024025 Ga0373947_0024025_1100_3427 709
55 3300037068 Ga0373925_0037145 Ga0373925_0037145_72_2399 709
56 3300046523 Ga0495644_0011357 Ga0495644_0011357_1091_3337 711
57 3300046616 Ga0495668_0017212 Ga0495668_0017212_1848_4088 711
58 3300005842 Ga0068858_100122056 Ga0068858_1001220561 713
59 3300005617 Ga0068859_100066360 Ga0068859_1000663602 714
60 3300006931 Ga0097620_100066360 Ga0097620_1000663602 714
61 3300026023 Ga0207677_10060304 Ga0207677_100603042 714
62 3300026089 Ga0207648_10092133 Ga0207648_100921332 714
63 3300041512 Ga0451853_3006979 Ga0451853_3006979_1520_3847 714
64 3300046459 Ga0495629_0027833 Ga0495629_0027833_274_2577 714
65 3300046476 Ga0495662_0012541 Ga0495662_0012541_246_2549 714
66 3300046531 Ga0495665_0024555 Ga0495665_0024555_416_2719 714
67 3300046680 Ga0495646_0027911 Ga0495646_0027911_25_2331 714
68 3300046690 Ga0495624_0028308 Ga0495624_0028308_178_2481 714
69 3300047319 Ga0495674_0014563 Ga0495674_0014563_1524_3827 714
70 3300047673 Ga0495593_0007843 Ga0495593_0007843_3478_5781 714
71 3300005467 Ga0070706_100046042 Ga0070706_1000460422 715
72 3300005468 Ga0070707_100018006 Ga0070707_1000180067 715
73 3300025910 Ga0207684_10027652 Ga0207684_100276523 715
74 3300025922 Ga0207646_10017756 Ga0207646_100177562 715
75 3300030878 Ga0265770_1000187 Ga0265770_10001873 715
76 3300005347 Ga0070668_100052340 Ga0070668_1000523402 718
77 3300005356 Ga0070674_100022696 Ga0070674_1000226962 718
78 3300005549 Ga0070704_100013271 Ga0070704_1000132712 718
79 3300005844 Ga0068862_100062102 Ga0068862_1000621021 718
80 3300006846 Ga0075430_100021281 Ga0075430_1000212812 718
81 3300006881 Ga0068865_100029166 Ga0068865_1000291662 718
82 3300025938 Ga0207704_10037871 Ga0207704_100378712 718
83 3300050509 nmdc:mga0qj67_7646_c2 nmdc:mga0qj67_7646_c2_793_3126 718
84 3300045976 Ga0466967_0049522 Ga0466967_0049522_1167_3653 719
85 3300025910 Ga0207684_10050674 Ga0207684_100506742 721
86 3300025922 Ga0207646_10020842 Ga0207646_100208423 721
87 3300005436 Ga0070713_100013962 Ga0070713_1000139627 722
88 3300005445 Ga0070708_100014451 Ga0070708_1000144514 722
89 3300049576 Ga0501040_0006267 Ga0501040_0006267_2959_5262 722
90 3300005445 Ga0070708_100020635 Ga0070708_1000206353 723
91 3300005458 Ga0070681_10011731 Ga0070681_100117316 723
92 3300005467 Ga0070706_100008123 Ga0070706_1000081236 723
93 3300005468 Ga0070707_100026999 Ga0070707_1000269992 723
94 3300005471 Ga0070698_100028247 Ga0070698_1000282474 723
95 3300005518 Ga0070699_100011050 Ga0070699_1000110504 723
96 3300005530 Ga0070679_100003223 Ga0070679_10000322315 723
97 3300005614 Ga0068856_100008115 Ga0068856_1000081154 723
98 3300006237 Ga0097621_100011632 Ga0097621_1000116325 723
99 3300006358 Ga0068871_100011534 Ga0068871_1000115344 723
100 3300009093 Ga0105240_10055483 Ga0105240_100554834 723
101 3300009551 Ga0105238_10008709 Ga0105238_100087098 723
102 3300013105 Ga0157369_10042455 Ga0157369_100424552 723
103 3300013296 Ga0157374_10001403 Ga0157374_1000140318 723
104 3300013307 Ga0157372_10024568 Ga0157372_100245684 723
105 3300025912 Ga0207707_10002626 Ga0207707_100026262 723
106 3300025913 Ga0207695_10019539 Ga0207695_100195395 723
107 3300025924 Ga0207694_10016086 Ga0207694_100160864 723
108 3300025949 Ga0207667_10000983 Ga0207667_100009832 723
109 3300026078 Ga0207702_10002381 Ga0207702_1000238119 723
110 3300039453 Ga0436362_0439408 Ga0436362_0439408_92_2380 723
111 3300048915 Ga0496112_0017024 Ga0496112_0017024_3274_5742 723
112 3300053077 Ga0495601_0001931 Ga0495601_0001931_7872_10133 723
113 3300053078 Ga0495612_0005050 Ga0495612_0005050_443_2704 723
114 3300053085 Ga0495619_0003558 Ga0495619_0003558_6566_8827 723
115 3300014968 Ga0157379_10068987 Ga0157379_100689872 724
116 3300048929 Ga0496126_0001843 Ga0496126_0001843_16383_18671 724
117 3300033179 Ga0307507_10036464 Ga0307507_100364642 725
118 3300046526 Ga0495666_0024180 Ga0495666_0024180_103_2448 725
119 3300005329 Ga0070683_100042061 Ga0070683_1000420612 726
120 3300005981 Ga0081538_10045926 Ga0081538_100459261 726
121 3300025944 Ga0207661_10029539 Ga0207661_100295392 726
122 3300035083 Ga0373926_0001190 Ga0373926_0001190_4105_6447 726
123 3300035089 Ga0373944_0003221 Ga0373944_0003221_1306_3648 726
124 3300035111 Ga0373923_0000219 Ga0373923_0000219_3637_5979 726
125 3300035113 Ga0373936_0000297 Ga0373936_0000297_7291_9633 726
126 3300035113 Ga0373936_0004606 Ga0373936_0004606_2157_4433 726
127 3300035170 Ga0373943_0008882 Ga0373943_0008882_773_3115 726
128 3300035171 Ga0373946_0001245 Ga0373946_0001245_2337_4679 726
129 3300035172 Ga0373955_0001266 Ga0373955_0001266_2977_5319 726
130 3300035410 Ga0373924_0000401 Ga0373924_0000401_5226_7568 726
131 3300035695 Ga0373927_0007059 Ga0373927_0007059_4583_6925 726
132 3300036401 Ga0373937_0011617 Ga0373937_0011617_1536_3878 726
133 3300042439 Ga0439464_0004019 Ga0439464_0004019_1283_3613 726
134 3300046455 Ga0495603_0004388 Ga0495603_0004388_3101_5443 726
135 3300046459 Ga0495629_0004870 Ga0495629_0004870_5286_7628 726
136 3300046462 Ga0495651_0006344 Ga0495651_0006344_3613_5955 726
137 3300046463 Ga0495653_0011742 Ga0495653_0011742_1838_4180 726
138 3300046473 Ga0495582_0003662 Ga0495582_0003662_3974_6316 726
139 3300046476 Ga0495662_0002554 Ga0495662_0002554_4940_7282 726
140 3300046477 Ga0495664_0001980 Ga0495664_0001980_7056_9398 726
141 3300046511 Ga0495608_0008282 Ga0495608_0008282_3346_5688 726
142 3300046516 Ga0495628_0016144 Ga0495628_0016144_2898_5240 726
143 3300046517 Ga0495630_0021907 Ga0495630_0021907_1838_4180 726
144 3300046526 Ga0495666_0001939 Ga0495666_0001939_2149_4491 726
145 3300046529 Ga0495652_0013264 Ga0495652_0013264_1611_3953 726
146 3300046531 Ga0495665_0001511 Ga0495665_0001511_4266_6608 726
147 3300046533 Ga0495640_0003510 Ga0495640_0003510_7678_10020 726
148 3300046535 Ga0495586_0005218 Ga0495586_0005218_1610_3952 726
149 3300046536 Ga0495587_0011831 Ga0495587_0011831_870_3212 726
150 3300046543 Ga0495645_0007572 Ga0495645_0007572_3102_5444 726
151 3300046675 Ga0495657_0007031 Ga0495657_0007031_4548_6890 726
152 3300046678 Ga0495599_0019852 Ga0495599_0019852_1304_3646 726
153 3300046679 Ga0495623_0009612 Ga0495623_0009612_55_2397 726
154 3300046680 Ga0495646_0019367 Ga0495646_0019367_1428_3770 726
155 3300046683 Ga0495658_0003796 Ga0495658_0003796_4302_6644 726
156 3300046690 Ga0495624_0007470 Ga0495624_0007470_1355_3697 726
157 3300047315 Ga0495581_0005224 Ga0495581_0005224_3739_6081 726
158 3300047444 Ga0495675_0004465 Ga0495675_0004465_3684_6026 726
159 3300047471 Ga0495684_0007343 Ga0495684_0007343_5424_7766 726
160 3300047673 Ga0495593_0004172 Ga0495593_0004172_4962_7304 726
161 3300048088 Ga0495602_0005046 Ga0495602_0005046_7533_9875 726
162 3300053077 Ga0495601_0012633 Ga0495601_0012633_1432_3774 726
163 3300053078 Ga0495612_0007249 Ga0495612_0007249_694_3036 726
164 iso_pu_bacteria 2513237083 2513564574 726
165 iso_pu_bacteria 2791355137 2792840723 726
166 iso_pu_bacteria 8003955200 8003960114 726
167 3300006844 Ga0075428_100073918 Ga0075428_1000739182 727
168 3300021384 Ga0213876_10019850 Ga0213876_100198503 727
169 3300021388 Ga0213875_10026094 Ga0213875_100260941 727
170 3300033179 Ga0307507_10022664 Ga0307507_100226647 727
171 3300037853 Ga0436364_0653578 Ga0436364_0653578_125_2443 727
172 3300039437 Ga0436365_0904925 Ga0436365_0904925_1464_3791 727
173 3300044842 Ga0466957_0017129 Ga0466957_0017129_1155_3485 727
174 3300050509 nmdc:mga0qj67_32170_c1 nmdc:mga0qj67_32170_c1_794_3133 727
175 3300050510 nmdc:mga06r32_41683_c1 nmdc:mga06r32_41683_c1_1024_3363 727
176 3300003320 rootH2_10040842 rootH2_100408426 728
177 3300005457 Ga0070662_100073623 Ga0070662_1000736231 728
178 3300005467 Ga0070706_100048862 Ga0070706_1000488622 728
179 3300005467 Ga0070706_100102493 Ga0070706_1001024932 728
180 3300005468 Ga0070707_100046196 Ga0070707_1000461963 728
181 3300005471 Ga0070698_100045925 Ga0070698_1000459252 728
182 3300005471 Ga0070698_100076285 Ga0070698_1000762851 728
183 3300006028 Ga0070717_10005250 Ga0070717_100052508 728
184 3300021358 Ga0213873_10001113 Ga0213873_100011133 728
185 3300021384 Ga0213876_10003890 Ga0213876_100038903 728
186 3300026041 Ga0207639_10038546 Ga0207639_100385461 728
187 3300039437 Ga0436365_0217432 Ga0436365_0217432_4792_7113 728
188 3300046524 Ga0495648_0017067 Ga0495648_0017067_494_2833 728
189 3300048912 Ga0496109_0068220 Ga0496109_0068220_206_2545 728
190 3300049578 Ga0501042_0000293 Ga0501042_0000293_12267_14636 728
191 3300031344 Ga0265316_10001573 Ga0265316_100015737 729
192 3300005468 Ga0070707_100006388 Ga0070707_1000063888 732
193 3300005471 Ga0070698_100011680 Ga0070698_1000116808 732
194 3300006028 Ga0070717_10010975 Ga0070717_100109753 732
195 3300025922 Ga0207646_10002541 Ga0207646_1000254113 732
196 3300054114 Ga0501084_0008587 Ga0501084_0008587_1834_4173 733
197 3300009147 Ga0114129_10048339 Ga0114129_100483393 734
198 3300050507 nmdc:mga05p37_14440_c1 nmdc:mga05p37_14440_c1_5659_7980 734
199 2010549000 RicEn_C366 RicEn_06710 736

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00589

Phage_integrase

Phage integrase family

466

659

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6en0-assembly1.cif.gz_A structure of the tn1549 transposon integrase (aa 82-397) in complex with circular intermediate dna (ci5-dna) 0.6709 269 616
6en0-assembly1.cif.gz_A structure of the tn1549 transposon integrase (aa 82-397) in complex with circular intermediate dna (ci5-dna) 0.6634 269 616
6emy-assembly1.cif.gz_B structure of the tn1549 transposon integrase (aa 82-397, y379f) in complex with transposon right end dna 0.6557 269 615
6en2-assembly1.cif.gz_B structure of the tn1549 transposon integrase (aa 82-397, r225k) in complex with a circular intermediate dna (ci6b-dna) 0.6511 268 617
6en2-assembly1.cif.gz_B structure of the tn1549 transposon integrase (aa 82-397, r225k) in complex with a circular intermediate dna (ci6b-dna) 0.6457 268 617
ID Description Score Start End Superfamily
af_Q57813_28_119_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.6827 269 373 1.10.150.130
af_C0H5A8_294_489_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.6689 400 615 1.10.443.10
af_C0H5A8_294_489_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.6493 400 615 1.10.443.10
af_Q57813_28_119_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.6409 269 373 1.10.150.130
af_P0A6N8_1_64_2.30.30.30 Mainly Beta;Roll;SH3 type barrels.; 0.6008 462 494 2.30.30.30
ID Description Score Start End GO Terms
AF-A0A161Z6F4-F1-model_v4 Integrase 0.9599 262 379
AF-J1ZLF0-F1-model_v4 Phage integrase family protein 0.9333 401 608 GO:0003677
GO:0006310
GO:0015074
AF-A0A376EBC3-F1-model_v4 deleted 0.9292 644 730
AF-A0A843Y763-F1-model_v4 deleted 0.9146 97 184
AF-A0A7Y6NJ47-F1-model_v4 Site-specific recombinase 0.9145 644 732

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pLDDT pTM Quality
80.24 0.64 Medium
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Predicted Structure (AlphaFold2)

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