F305425

General Info

Members Datasets Scaffolds Average Seq Length
199 138 398 496

Family's Representative Sequence

Representative Sequence 3300005364|Ga0070673_100017979|Ga0070673_1000179792
Length 555
Sequence LHHGRARSRGRPFTTDNPKDYIHTLKIVIADDLPASALDLLRAESGWIIDNRPGRSPAALAADLADADALIVRSATQVTAGLLEAAPQLRIIARAGTGVDNVDVAAASARGVLVVNAPGANSISVAEHTLALMLALARLVPAADRAMKEGRWDKKRFLGNELRGKTLGVAGLGRIGREVAQRARSFGMRIVAHDPYISADVAAGLGIELLTLDALCTTADYITLHLPLTPETRHVFNDARFAACKPGLRLVNTARGELIDEGALRRAIESGIVEGAGLDVFEVEPLKDWSLAQLPQVVATPHIAASTEEAQELVGTDTAATVRDFLQSGIVRNAVNFPSLQPEELQRLQPWIRLADQLGGLAAQMGAARIQAVGVRYYGALVDARAVEVLAASAAAGVLRPILSSGVSIVNARAAAEARGVDIVESRSSRARDYTGLLSIKLQTDQGERLVEGTVFEPNNIRLVSARGVNIEAPLGGTMLMITNDDQPGVIGEVGTILGRHKVNIANFALGRNEHGAIGLVNVDEDTAAPAVLDNAVAELRKVAAIREAWIVRLP

Samples

Sample ID Description Type Environment
1 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
19 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
47 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
56 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
57 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
82 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
83 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
84 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
85 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
86 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
87 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
88 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
89 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
90 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
91 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
92 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
93 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
94 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
95 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
96 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
97 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
99 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
102 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
103 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
104 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
105 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
106 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
107 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
108 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
109 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
110 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
116 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
117 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
122 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
123 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
124 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
125 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
126 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
127 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
128 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.5
Nodule 0
Rhizoplane 5.03
Rhizosphere 94.47
Stem 0
Stem Tuber 0
Unclassified 0.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070673_100017979 3300005364 Bacteria 5042
2 Ga0070676_10011080 3300005328 Bacteria 4899
3 Ga0070666_10044992 3300005335 Bacteria 2959
4 Ga0068868_100125098 3300005338 Bacteria 2100
5 Ga0070675_100000055 3300005354 Bacteria 68147
6 Ga0070671_100023782 3300005355 Bacteria 5015
7 Ga0070667_100068462 3300005367 Bacteria 3021
8 Ga0070713_100036984 3300005436 Bacteria 3944
9 Ga0070705_100001314 3300005440 Bacteria 13321
10 Ga0070700_100001496 3300005441 Bacteria 11632
11 Ga0070694_100010047 3300005444 Bacteria 5819
12 Ga0070708_100029846 3300005445 Bacteria 4707
13 Ga0068867_100013388 3300005459 Bacteria 5811
14 Ga0068867_100049107 3300005459 Bacteria 3106
15 Ga0070706_100092040 3300005467 Bacteria 2813
16 Ga0070698_100142369 3300005471 Bacteria 2348
17 Ga0070697_100066729 3300005536 Bacteria 2942
18 Ga0070672_100009710 3300005543 Bacteria 6645
19 Ga0070686_100001503 3300005544 Bacteria 13109
20 Ga0070695_100086734 3300005545 Bacteria 2081
21 Ga0070696_100065919 3300005546 Bacteria 2539
22 Ga0070665_100028934 3300005548 Bacteria 5578
23 Ga0070665_100036463 3300005548 Bacteria 4946
24 Ga0070704_100002750 3300005549 Bacteria 9942
25 Ga0068854_100002435 3300005578 Bacteria 11502
26 Ga0070702_100007622 3300005615 Bacteria 5187
27 Ga0068859_100129465 3300005617 Bacteria 2595
28 Ga0068861_100001397 3300005719 Bacteria 15173
29 Ga0068861_100084609 3300005719 Bacteria 2490
30 Ga0068863_100003994 3300005841 Bacteria 14562
31 Ga0068858_100000761 3300005842 Bacteria 33790
32 Ga0068858_100028616 3300005842 Bacteria 5175
33 Ga0068862_100015764 3300005844 Bacteria 6280
34 Ga0081455_10098731 3300005937 Bacteria 2350
35 Ga0075366_10022702 3300006195 Bacteria 3653
36 Ga0097621_100000066 3300006237 Bacteria 54619
37 Ga0097621_100003865 3300006237 Bacteria 10377
38 Ga0097621_100027133 3300006237 Bacteria 4500
39 Ga0097621_100058407 3300006237 Bacteria 3156
40 Ga0068871_100006101 3300006358 Bacteria 8486
41 Ga0068871_100010591 3300006358 Bacteria 6739
42 Ga0068871_100022250 3300006358 Bacteria 4888
43 Ga0068871_100024484 3300006358 Bacteria 4683
44 Ga0075430_100004147 3300006846 Bacteria 12229
45 Ga0075431_100046694 3300006847 Bacteria 4466
46 Ga0075431_100177428 3300006847 Bacteria 2188
47 Ga0075433_10036322 3300006852 Bacteria 4244
48 Ga0075434_100003083 3300006871 Bacteria 14828
49 Ga0075434_100004707 3300006871 Bacteria 12331
50 Ga0075434_100093352 3300006871 Bacteria 3013
51 Ga0075434_100170026 3300006871 Bacteria 2199
52 Ga0075429_100113989 3300006880 Bacteria 2363
53 Ga0068865_100006299 3300006881 Bacteria 7229
54 Ga0075436_100015871 3300006914 Bacteria 5156
55 Ga0075436_100034460 3300006914 Bacteria 3491
56 Ga0075436_100066494 3300006914 Bacteria 2491
57 Ga0097620_100129474 3300006931 Bacteria 2595
58 Ga0075435_100000894 3300007076 Bacteria 18764
59 Ga0075435_100003390 3300007076 Bacteria 10807
60 Ga0075435_100069434 3300007076 Bacteria 2873
61 Ga0105240_10035567 3300009093 Bacteria 6417
62 Ga0111539_10000210 3300009094 Bacteria 69456
63 Ga0111539_10004657 3300009094 Bacteria 17928
64 Ga0111539_10008383 3300009094 Bacteria 13151
65 Ga0114129_10001367 3300009147 Bacteria 32804
66 Ga0114129_10004889 3300009147 Bacteria 18911
67 Ga0114129_10008634 3300009147 Bacteria 14527
68 Ga0114129_10011193 3300009147 Bacteria 12788
69 Ga0114129_10016963 3300009147 Bacteria 10368
70 Ga0114129_10017482 3300009147 Bacteria 10210
71 Ga0114129_10034958 3300009147 Bacteria 7099
72 Ga0114129_10039458 3300009147 Bacteria 6656
73 Ga0114129_10093267 3300009147 Bacteria 4171
74 Ga0105243_10022336 3300009148 Bacteria 4808
75 Ga0105242_10006890 3300009176 Bacteria 8765
76 Ga0105242_10038941 3300009176 Bacteria 3826
77 Ga0105242_10100159 3300009176 Bacteria 2453
78 Ga0105248_10010609 3300009177 Bacteria 10155
79 Ga0105248_10096810 3300009177 Bacteria 3324
80 Ga0105248_10120103 3300009177 Bacteria 2965
81 Ga0105237_10023328 3300009545 Bacteria 6341
82 Ga0157378_10136233 3300013297 Bacteria 2277
83 Ga0163162_10075046 3300013306 Bacteria 3441
84 Ga0157375_10043407 3300013308 Bacteria 4361
85 Ga0157375_10192225 3300013308 Bacteria 2196
86 Ga0163163_10005222 3300014325 Bacteria 11201
87 Ga0157380_10205147 3300014326 Bacteria 1752
88 Ga0157377_10028671 3300014745 Bacteria 2998
89 Ga0157376_10032261 3300014969 Bacteria 4204
90 Ga0157376_10046772 3300014969 Bacteria 3570
91 Ga0207642_10028494 3300025899 Bacteria 2301
92 Ga0207645_10000802 3300025907 Bacteria 26290
93 Ga0207695_10045280 3300025913 Bacteria 4671
94 Ga0207671_10124465 3300025914 Bacteria 1973
95 Ga0207646_10082014 3300025922 Bacteria 2884
96 Ga0207681_10010712 3300025923 Bacteria 5626
97 Ga0207681_10064335 3300025923 Bacteria 2532
98 Ga0207659_10001259 3300025926 Bacteria 15164
99 Ga0207687_10015103 3300025927 Bacteria 5059
100 Ga0207700_10035906 3300025928 Bacteria 3575
101 Ga0207709_10039078 3300025935 Bacteria 2832
102 Ga0207669_10085080 3300025937 Bacteria 2040
103 Ga0207691_10018050 3300025940 Bacteria 6680
104 Ga0207711_10044427 3300025941 Bacteria 3793
105 Ga0207689_10073812 3300025942 Bacteria 2803
106 Ga0207667_10129099 3300025949 Bacteria 2603
107 Ga0207640_10015849 3300025981 Bacteria 4373
108 Ga0207703_10031678 3300026035 Bacteria 4183
109 Ga0207703_10133773 3300026035 Bacteria 2144
110 Ga0207708_10003693 3300026075 Bacteria 11298
111 Ga0207708_10024462 3300026075 Bacteria 4569
112 Ga0207641_10008243 3300026088 Bacteria 8614
113 Ga0207648_10103991 3300026089 Bacteria 2490
114 Ga0207675_100004573 3300026118 Bacteria 13347
115 Ga0207428_10000584 3300027907 Bacteria 43080
116 Ga0207428_10012750 3300027907 Bacteria 7370
117 Ga0207428_10042701 3300027907 Bacteria 3666
118 Ga0268266_10027361 3300028379 Bacteria 4849
119 Ga0268265_10009937 3300028380 Bacteria 6429
120 Ga0268265_10077096 3300028380 Bacteria 2617
121 Ga0373948_0001908 3300034817 Bacteria 2989
122 Ga0373959_0004594 3300034820 Bacteria 2230
123 Ga0373938_0003394 3300034957 Bacteria 2609
124 Ga0373928_0003172 3300035084 Bacteria 3149
125 Ga0373929_0002428 3300035085 Bacteria 3421
126 Ga0373949_0001499 3300035090 Bacteria 6625
127 Ga0373951_0000848 3300035091 Bacteria 8297
128 Ga0373952_0001615 3300035092 Bacteria 4101
129 Ga0373932_0000956 3300035112 Bacteria 8446
130 Ga0373936_0069707 3300035113 Unclassified 1447
131 Ga0373960_0028018 3300035121 Bacteria 1552
132 Ga0373943_0004031 3300035170 Bacteria 6679
133 Ga0373942_0000284 3300035207 Bacteria 13775
134 Ga0373961_0001679 3300035241 Bacteria 6176
135 Ga0373962_0002458 3300035242 Bacteria 4405
136 Ga0373931_0007850 3300035691 Bacteria 5044
137 Ga0373937_0069184 3300036401 Bacteria 3254
138 Ga0373925_0030920 3300037068 Bacteria 3932
139 Ga0439435_0008700 3300042436 Bacteria 2360
140 Ga0451576_0005014 3300045051 Bacteria 16823
141 Ga0495580_0074290 3300046472 Bacteria 2373
142 Ga0495608_0009158 3300046511 Bacteria 6921
143 Ga0495645_0004545 3300046543 Bacteria 9467
144 Ga0495634_0064247 3300046642 Bacteria 2434
145 Ga0495635_0107653 3300046663 Bacteria 1904
146 Ga0495658_0072965 3300046683 Bacteria 1997
147 Ga0495613_0021116 3300046689 Bacteria 4855
148 Ga0495684_0000174 3300047471 Bacteria 48736
149 Ga0496100_0005884 3300048903 Bacteria 6641
150 Ga0496101_0000222 3300048904 Bacteria 42490
151 Ga0496102_0051434 3300048905 Bacteria 3753
152 Ga0496104_0001478 3300048907 Bacteria 20272
153 Ga0496104_0043990 3300048907 Bacteria 4196
154 Ga0496109_0146181 3300048912 Bacteria 2212
155 Ga0496112_0017065 3300048915 Bacteria 6815
156 Ga0496114_0000416 3300048917 Bacteria 31603
157 Ga0496114_0018729 3300048917 Bacteria 5603
158 Ga0496115_0060180 3300048918 Bacteria 3060
159 Ga0501031_0066696 3300049568 Bacteria 2345
160 Ga0501033_0074843 3300049570 Bacteria 2486
161 Ga0501040_0088034 3300049576 Bacteria 2156
162 Ga0501042_0088112 3300049578 Bacteria 2227
163 Ga0501068_0130735 3300049584 Bacteria 1570
164 Ga0501072_0079942 3300049588 Bacteria 2590
165 Ga0501073_0000842 3300049589 Bacteria 21848
166 Ga0501074_0078758 3300049590 Bacteria 2365
167 Ga0501075_0025232 3300049591 Bacteria 4367
168 Ga0501075_0144978 3300049591 Bacteria 1810
169 Ga0501076_0069295 3300049592 Bacteria 2818
170 Ga0501081_0084414 3300049743 Bacteria 2227
171 Ga0501045_0002984 3300049824 Bacteria 11576
172 nmdc:mga05p37_1036_c1 3300050507 Bacteria 31681
173 nmdc:mga05p37_234199_c1 3300050507 Bacteria 2211
174 nmdc:mga05p37_32716_c1 3300050507 Bacteria 6362
175 nmdc:mga05p37_36935_c1 3300050507 Bacteria 5992
176 nmdc:mga05p37_38081_c1 3300050507 Bacteria 5898
177 nmdc:mga05p37_45131_c1 3300050507 Bacteria 5422
178 nmdc:mga05p37_4703_c1 3300050507 Bacteria 15946
179 nmdc:mga05p37_52122_c1 3300050507 Bacteria 5032
180 nmdc:mga09592_258724_c1 3300050508 Bacteria 1509
181 nmdc:mga06r32_27677_c1 3300050510 Bacteria 5298
182 nmdc:mga08y16_12391_c1 3300050511 Bacteria 8968
183 nmdc:mga08y16_323585_c1 3300050511 Bacteria 1587
184 nmdc:mga08y16_3591_c1 3300050511 Bacteria 16109
185 nmdc:mga08y16_402_c1 3300050511 Bacteria 39748
186 nmdc:mga08y16_49719_c1 3300050511 Bacteria 4387
187 nmdc:mga08y16_5494_c1 3300050511 Bacteria 13252
188 nmdc:mga0n895_12538_c1 3300050512 Bacteria 7606
189 nmdc:mga0n895_98575_c1 3300050512 Bacteria 2929
190 nmdc:mga0rr50_114_c1 3300050513 Bacteria 44678
191 nmdc:mga0rr50_2170_c1 3300050513 Bacteria 10984
192 nmdc:mga0rr50_45829_c1 3300050513 Bacteria 3216
193 nmdc:mga08x19_2110_c1 3300050514 Bacteria 12144
194 nmdc:mga08x19_48810_c1 3300050514 Bacteria 2713
195 nmdc:mga08x19_9185_c1 3300050514 Bacteria 5902
196 nmdc:mga0a205_126283_c1 3300050515 Bacteria 2458
197 nmdc:mga0a205_45904_c1 3300050515 Bacteria 4213
198 Ga0495619_0020768 3300053085 Bacteria 4187
199 Ga0530510_0038853 3300061734 Bacteria 3437
200 Ga0070673_100017979
201 Ga0070676_10011080
202 Ga0070666_10044992
203 Ga0068868_100125098
204 Ga0070675_100000055
205 Ga0070671_100023782
206 Ga0070667_100068462
207 Ga0070713_100036984
208 Ga0070705_100001314
209 Ga0070700_100001496
210 Ga0070694_100010047
211 Ga0070708_100029846
212 Ga0068867_100013388
213 Ga0068867_100049107
214 Ga0070706_100092040
215 Ga0070698_100142369
216 Ga0070697_100066729
217 Ga0070672_100009710
218 Ga0070686_100001503
219 Ga0070695_100086734
220 Ga0070696_100065919
221 Ga0070665_100028934
222 Ga0070665_100036463
223 Ga0070704_100002750
224 Ga0068854_100002435
225 Ga0070702_100007622
226 Ga0068859_100129465
227 Ga0068861_100001397
228 Ga0068861_100084609
229 Ga0068863_100003994
230 Ga0068858_100000761
231 Ga0068858_100028616
232 Ga0068862_100015764
233 Ga0081455_10098731
234 Ga0075366_10022702
235 Ga0097621_100000066
236 Ga0097621_100003865
237 Ga0097621_100027133
238 Ga0097621_100058407
239 Ga0068871_100006101
240 Ga0068871_100010591
241 Ga0068871_100022250
242 Ga0068871_100024484
243 Ga0075430_100004147
244 Ga0075431_100046694
245 Ga0075431_100177428
246 Ga0075433_10036322
247 Ga0075434_100003083
248 Ga0075434_100004707
249 Ga0075434_100093352
250 Ga0075434_100170026
251 Ga0075429_100113989
252 Ga0068865_100006299
253 Ga0075436_100015871
254 Ga0075436_100034460
255 Ga0075436_100066494
256 Ga0097620_100129474
257 Ga0075435_100000894
258 Ga0075435_100003390
259 Ga0075435_100069434
260 Ga0105240_10035567
261 Ga0111539_10000210
262 Ga0111539_10004657
263 Ga0111539_10008383
264 Ga0114129_10001367
265 Ga0114129_10004889
266 Ga0114129_10008634
267 Ga0114129_10011193
268 Ga0114129_10016963
269 Ga0114129_10017482
270 Ga0114129_10034958
271 Ga0114129_10039458
272 Ga0114129_10093267
273 Ga0105243_10022336
274 Ga0105242_10006890
275 Ga0105242_10038941
276 Ga0105242_10100159
277 Ga0105248_10010609
278 Ga0105248_10096810
279 Ga0105248_10120103
280 Ga0105237_10023328
281 Ga0157378_10136233
282 Ga0163162_10075046
283 Ga0157375_10043407
284 Ga0157375_10192225
285 Ga0163163_10005222
286 Ga0157380_10205147
287 Ga0157377_10028671
288 Ga0157376_10032261
289 Ga0157376_10046772
290 Ga0207642_10028494
291 Ga0207645_10000802
292 Ga0207695_10045280
293 Ga0207671_10124465
294 Ga0207646_10082014
295 Ga0207681_10010712
296 Ga0207681_10064335
297 Ga0207659_10001259
298 Ga0207687_10015103
299 Ga0207700_10035906
300 Ga0207709_10039078
301 Ga0207669_10085080
302 Ga0207691_10018050
303 Ga0207711_10044427
304 Ga0207689_10073812
305 Ga0207667_10129099
306 Ga0207640_10015849
307 Ga0207703_10031678
308 Ga0207703_10133773
309 Ga0207708_10003693
310 Ga0207708_10024462
311 Ga0207641_10008243
312 Ga0207648_10103991
313 Ga0207675_100004573
314 Ga0207428_10000584
315 Ga0207428_10012750
316 Ga0207428_10042701
317 Ga0268266_10027361
318 Ga0268265_10009937
319 Ga0268265_10077096
320 Ga0373948_0001908
321 Ga0373959_0004594
322 Ga0373938_0003394
323 Ga0373928_0003172
324 Ga0373929_0002428
325 Ga0373949_0001499
326 Ga0373951_0000848
327 Ga0373952_0001615
328 Ga0373932_0000956
329 Ga0373936_0069707
330 Ga0373960_0028018
331 Ga0373943_0004031
332 Ga0373942_0000284
333 Ga0373961_0001679
334 Ga0373962_0002458
335 Ga0373931_0007850
336 Ga0373937_0069184
337 Ga0373925_0030920
338 Ga0439435_0008700
339 Ga0451576_0005014
340 Ga0495580_0074290
341 Ga0495608_0009158
342 Ga0495645_0004545
343 Ga0495634_0064247
344 Ga0495635_0107653
345 Ga0495658_0072965
346 Ga0495613_0021116
347 Ga0495684_0000174
348 Ga0496100_0005884
349 Ga0496101_0000222
350 Ga0496102_0051434
351 Ga0496104_0001478
352 Ga0496104_0043990
353 Ga0496109_0146181
354 Ga0496112_0017065
355 Ga0496114_0000416
356 Ga0496114_0018729
357 Ga0496115_0060180
358 Ga0501031_0066696
359 Ga0501033_0074843
360 Ga0501040_0088034
361 Ga0501042_0088112
362 Ga0501068_0130735
363 Ga0501072_0079942
364 Ga0501073_0000842
365 Ga0501074_0078758
366 Ga0501075_0025232
367 Ga0501075_0144978
368 Ga0501076_0069295
369 Ga0501081_0084414
370 Ga0501045_0002984
371 nmdc:mga05p37_1036_c1
372 nmdc:mga05p37_234199_c1
373 nmdc:mga05p37_32716_c1
374 nmdc:mga05p37_36935_c1
375 nmdc:mga05p37_38081_c1
376 nmdc:mga05p37_45131_c1
377 nmdc:mga05p37_4703_c1
378 nmdc:mga05p37_52122_c1
379 nmdc:mga09592_258724_c1
380 nmdc:mga06r32_27677_c1
381 nmdc:mga08y16_12391_c1
382 nmdc:mga08y16_323585_c1
383 nmdc:mga08y16_3591_c1
384 nmdc:mga08y16_402_c1
385 nmdc:mga08y16_49719_c1
386 nmdc:mga08y16_5494_c1
387 nmdc:mga0n895_12538_c1
388 nmdc:mga0n895_98575_c1
389 nmdc:mga0rr50_114_c1
390 nmdc:mga0rr50_2170_c1
391 nmdc:mga0rr50_45829_c1
392 nmdc:mga08x19_2110_c1
393 nmdc:mga08x19_48810_c1
394 nmdc:mga08x19_9185_c1
395 nmdc:mga0a205_126283_c1
396 nmdc:mga0a205_45904_c1
397 Ga0495619_0020768
398 Ga0530510_0038853

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00389

2-Hacid_dh

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

27

336

0.99

PF02826

2-Hacid_dh_C

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

130

304

0.98

PF19304

PGDH_inter

D-3-phosphoglycerate dehydrogenase intervening domain

347

467

0.96

PF01842

ACT

ACT domain

478

545

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
7va1-assembly1.cif.gz_B crystal structure of human 3-phosphoglycerate dehydrogenase in complex with gdd-04-35 0.8878 61 245
2caj-assembly1.cif.gz_A-2 nikr from helicobacter pylori in closed trans-conformation and nickel bound to 4 intermediary sites 0.8753 414 490
6rj6-assembly1.cif.gz_B crystal structure of phgdh in complex with bi-4924 0.869 61 261
2ca9-assembly1.cif.gz_A apo-nikr from helicobacter pylori in closed trans-conformation 0.8664 414 491
2wvc-assembly1.cif.gz_A structural and mechanistic insights into helicobacter pylori nikr function 0.8612 414 491
ID Description Score Start End Superfamily
af_Q58424_319_450_3.30.1330.90 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;D-3-phosphoglycerate dehydrogenase; domain 3 0.9661 280 413 3.30.1330.90
af_Q2FVW4_141_284_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9604 98 238 3.40.50.720
af_Q58424_319_450_3.30.1330.90 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;D-3-phosphoglycerate dehydrogenase; domain 3 0.9519 280 413 3.30.1330.90
af_Q9VII9_150_293_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9451 98 238 3.40.50.720
af_Q7SZY8_153_293_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9371 101 238 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3T1E0P6-F1-model_v4 deleted 0.9783 98 222
AF-W1EAQ8-F1-model_v4 deleted 0.9624 99 200
AF-A0A800L718-F1-model_v4 Hydroxyacid dehydrogenase 0.9438 142 224 GO:0016614
GO:0051287
AF-A0A7X6A6N6-F1-model_v4 ACT domain-containing protein 0.9379 327 490
AF-A0A0L8HL49-F1-model_v4 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding domain-containing protein 0.9345 109 238 GO:0005829
GO:0016618
GO:0030267
GO:0051287

Map