F304552

General Info

Members Datasets Scaffolds Average Seq Length
198 129 396 229

Family's Representative Sequence

Representative Sequence 3300025960|Ga0207651_10088591|Ga0207651_100885912
Length 258
Sequence MTFDRLRHRVIADDLQVAKGAGSRTLLPPIGSFRAPSTRSAALLAWYTAYGRDLPWRHTRDPYAILVAEVMLQQTQVDRVLPKYHEWLEKYPSLSALAAADQNEVTDTWRPLGYNIRPRRLHAIARESMERYGGELPSDHETLLSFKGIGAYTAGAIRSFAFGQRAAILDTNVARVLHRVFVVTGDVKAHAMKRHLWSLSEVLVPRKHVFDFNQALMDFGATVCVARKPRCEACPMTRQCRSYPLLHRNHPTDQVSRP

Samples

Sample ID Description Type Environment
1 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
81 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
85 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
88 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
89 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
90 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
91 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
94 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
95 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
96 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
99 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
100 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
101 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
102 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
103 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
104 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
105 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
106 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
111 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049760 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control Metagenome Rhizosphere
114 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
115 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
116 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
117 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
118 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
120 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
121 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
122 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
123 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
124 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
125 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
126 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
127 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
128 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
129 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.51
Nodule 0
Rhizoplane 1.52
Rhizosphere 97.47
Stem 0
Stem Tuber 0
Unclassified 3.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207651_10088591 3300025960 Bacteria 2257
2 JGI24751J29686_10006086 3300002459 Bacteria 2455
3 Ga0065715_10106016 3300005293 Bacteria 2856
4 Ga0070683_100222278 3300005329 Bacteria 1795
5 Ga0070670_100074251 3300005331 Bacteria 2921
6 Ga0070670_100194124 3300005331 Bacteria 1764
7 Ga0070670_100414105 3300005331 Bacteria 1191
8 Ga0070666_10154972 3300005335 Bacteria 1599
9 Ga0070680_100203160 3300005336 Bacteria 1671
10 Ga0070660_100004015 3300005339 Bacteria 10158
11 Ga0070689_100230411 3300005340 Bacteria 1523
12 Ga0070675_100001310 3300005354 Bacteria 18174
13 Ga0070675_100007188 3300005354 Bacteria 8579
14 Ga0070675_100014548 3300005354 Bacteria 6207
15 Ga0070675_100071448 3300005354 Bacteria 2879
16 Ga0070673_100174095 3300005364 Bacteria 1838
17 Ga0070688_100232016 3300005365 Bacteria 1306
18 Ga0070711_100415993 3300005439 Bacteria 1094
19 Ga0070681_10407820 3300005458 Bacteria 1271
20 Ga0070685_10262318 3300005466 Bacteria 1149
21 Ga0070698_100006737 3300005471 Bacteria 12455
22 Ga0070699_100001199 3300005518 Bacteria 23945
23 Ga0070679_100277893 3300005530 Bacteria 1628
24 Ga0068853_100182593 3300005539 Bacteria 1903
25 Ga0070672_100069506 3300005543 Bacteria 2796
26 Ga0070686_100483467 3300005544 Bacteria 958
27 Ga0070693_100209172 3300005547 Bacteria 1272
28 Ga0070704_100001151 3300005549 Bacteria 13820
29 Ga0070704_100027320 3300005549 Bacteria 3783
30 Ga0068855_100025383 3300005563 Bacteria 7090
31 Ga0070664_100704320 3300005564 Archaea 941
32 Ga0068856_100043008 3300005614 Bacteria 4445
33 Ga0068859_100026449 3300005617 Bacteria 5819
34 Ga0068859_101308583 3300005617 Bacteria 799
35 Ga0068864_100221878 3300005618 Bacteria 1744
36 Ga0068866_10163574 3300005718 Bacteria 1300
37 Ga0068861_100140579 3300005719 Bacteria 1970
38 Ga0068870_10003926 3300005840 Bacteria 6346
39 Ga0068863_100201479 3300005841 Bacteria 1915
40 Ga0068858_100034247 3300005842 Bacteria 4711
41 Ga0068858_100170025 3300005842 Bacteria 2055
42 Ga0068860_100666450 3300005843 Bacteria 1049
43 Ga0068862_100010794 3300005844 Bacteria 7543
44 Ga0081539_10001136 3300005985 Bacteria 48290
45 Ga0081539_10004921 3300005985 Bacteria 14226
46 Ga0097621_100217096 3300006237 Bacteria 1665
47 Ga0097621_100266539 3300006237 Bacteria 1504
48 Ga0097621_100381360 3300006237 Bacteria 1259
49 Ga0068871_100124493 3300006358 Bacteria 2180
50 Ga0075428_100003353 3300006844 Bacteria 17522
51 Ga0075428_100449023 3300006844 Bacteria 1381
52 Ga0075431_100001181 3300006847 Bacteria 23559
53 Ga0075433_10129195 3300006852 Bacteria 2245
54 Ga0075433_10209767 3300006852 Bacteria 1731
55 Ga0075433_10220317 3300006852 Bacteria 1685
56 Ga0075434_100019897 3300006871 Bacteria 6501
57 Ga0075434_100023841 3300006871 Bacteria 5972
58 Ga0075434_100403104 3300006871 Bacteria 1389
59 Ga0097620_100026449 3300006931 Bacteria 5819
60 Ga0097620_101308802 3300006931 Bacteria 799
61 Ga0075435_100287440 3300007076 Bacteria 1404
62 Ga0105240_10067435 3300009093 Bacteria 4435
63 Ga0105240_10087553 3300009093 Bacteria 3814
64 Ga0111539_10000126 3300009094 Bacteria 86123
65 Ga0111539_10002429 3300009094 Bacteria 24773
66 Ga0111539_10125419 3300009094 Bacteria 3009
67 Ga0114129_10000772 3300009147 Bacteria 40849
68 Ga0114129_10001185 3300009147 Bacteria 34615
69 Ga0114129_10001820 3300009147 Bacteria 29050
70 Ga0114129_10042168 3300009147 Bacteria 6426
71 Ga0114129_10103088 3300009147 Bacteria 3945
72 Ga0114129_10121255 3300009147 Bacteria 3598
73 Ga0105242_10010749 3300009176 Bacteria 7027
74 Ga0105242_10436589 3300009176 Bacteria 1231
75 Ga0105248_10226642 3300009177 Bacteria 2104
76 Ga0105248_10909889 3300009177 Bacteria 993
77 Ga0105249_10353842 3300009553 Bacteria 1488
78 Ga0105249_10478073 3300009553 Unclassified 1288
79 Ga0105249_10890644 3300009553 Bacteria 957
80 Ga0157370_10265269 3300013104 Bacteria 1587
81 Ga0157374_10226308 3300013296 Bacteria 1837
82 Ga0157374_10848032 3300013296 Bacteria 930
83 Ga0163162_10015236 3300013306 Bacteria 7510
84 Ga0163162_10530333 3300013306 Bacteria 1307
85 Ga0163162_10654225 3300013306 Bacteria 1174
86 Ga0163162_11302863 3300013306 Bacteria 825
87 Ga0157372_10455607 3300013307 Bacteria 1491
88 Ga0157372_10891368 3300013307 Bacteria 1032
89 Ga0157375_10167853 3300013308 Bacteria 2341
90 Ga0157375_10175252 3300013308 Bacteria 2294
91 Ga0157375_10226658 3300013308 Bacteria 2028
92 Ga0157375_10420366 3300013308 Bacteria 1503
93 Ga0157380_10045525 3300014326 Bacteria 3443
94 Ga0157380_10749722 3300014326 Bacteria 988
95 Ga0163161_10034016 3300017792 Bacteria 3644
96 Ga0163161_10573397 3300017792 Bacteria 927
97 Ga0207682_10220054 3300025893 Bacteria 878
98 Ga0207645_10154426 3300025907 Bacteria 1499
99 Ga0207695_10042226 3300025913 Bacteria 4873
100 Ga0207663_10351588 3300025916 Bacteria 1116
101 Ga0207657_10022684 3300025919 Bacteria 5865
102 Ga0207646_10158060 3300025922 Unclassified 2045
103 Ga0207681_10168512 3300025923 Bacteria 1658
104 Ga0207650_10062026 3300025925 Bacteria 2792
105 Ga0207650_10156202 3300025925 Bacteria 1804
106 Ga0207650_10167723 3300025925 Bacteria 1743
107 Ga0207659_10000076 3300025926 Bacteria 62373
108 Ga0207659_10007778 3300025926 Bacteria 6621
109 Ga0207659_10272402 3300025926 Bacteria 1381
110 Ga0207659_10333359 3300025926 Bacteria 1255
111 Ga0207644_10420045 3300025931 Bacteria 1095
112 Ga0207706_10548183 3300025933 Bacteria 996
113 Ga0207691_10077704 3300025940 Bacteria 2989
114 Ga0207711_10063206 3300025941 Bacteria 3195
115 Ga0207689_10148669 3300025942 Bacteria 1931
116 Ga0207661_10267397 3300025944 Bacteria 1525
117 Ga0207703_10346428 3300026035 Bacteria 1367
118 Ga0207702_10461220 3300026078 Bacteria 1234
119 Ga0207676_10103151 3300026095 Bacteria 2369
120 Ga0207675_100168440 3300026118 Bacteria 2093
121 Ga0207675_100717710 3300026118 Bacteria 1009
122 Ga0207683_10066690 3300026121 Bacteria 3174
123 Ga0207683_10422487 3300026121 Bacteria 1228
124 Ga0207428_10218794 3300027907 Bacteria 1428
125 Ga0268265_10052118 3300028380 Bacteria 3093
126 Ga0307408_100548797 3300031548 Bacteria 1019
127 Ga0307405_10289715 3300031731 Bacteria 1237
128 Ga0307409_100139200 3300031995 Unclassified 2088
129 Ga0307416_100095017 3300032002 Bacteria 2572
130 Ga0307411_10760308 3300032005 Unclassified 850
131 Ga0373957_0071848 3300035120 Bacteria 1355
132 Ga0451853_3556378 3300041512 Bacteria 1643
133 Ga0439433_0004627 3300041999 Bacteria 2956
134 Ga0439446_0038591 3300042156 Bacteria 1401
135 Ga0439444_0030825 3300042437 Bacteria 1006
136 Ga0439460_0006671 3300042461 Bacteria 2868
137 Ga0451577_0023245 3300042876 Bacteria 5654
138 Ga0451576_0057065 3300045051 Bacteria 4082
139 Ga0495603_0020172 3300046455 Bacteria 4040
140 Ga0495639_0404205 3300046475 Bacteria 690
141 Ga0495664_0102857 3300046477 Bacteria 1722
142 Ga0495594_0064202 3300046499 Bacteria 2035
143 Ga0495643_0004689 3300046522 Bacteria 9493
144 Ga0495642_0009824 3300046528 Bacteria 3666
145 Ga0495598_0004718 3300046537 Bacteria 2972
146 Ga0495667_0160966 3300046559 Bacteria 1444
147 Ga0495634_0267985 3300046642 Bacteria 1040
148 Ga0495659_0015571 3300046664 Bacteria 2501
149 Ga0495659_0016127 3300046664 Bacteria 2462
150 Ga0495659_0143028 3300046664 Unclassified 956
151 Ga0495588_0002823 3300046674 Bacteria 7467
152 Ga0495674_0092077 3300047319 Bacteria 2589
153 Ga0496101_0390299 3300048904 Bacteria 1096
154 Ga0496104_0202091 3300048907 Bacteria 1899
155 Ga0496114_0080077 3300048917 Bacteria 2758
156 Ga0501041_0146980 3300049577 Unclassified 1471
157 Ga0501047_0054943 3300049581 Bacteria 3851
158 Ga0501067_0028326 3300049583 Bacteria 3103
159 Ga0501249_030822 3300049679 Bacteria 1195
160 Ga0501080_1061836 3300049742 Bacteria 700
161 Ga0501263_025076 3300049760 Bacteria 820
162 Ga0501045_0059321 3300049824 Bacteria 2803
163 nmdc:mga05p37_14944_c1 3300050507 Bacteria 9319
164 nmdc:mga05p37_15091_c1 3300050507 Bacteria 9275
165 nmdc:mga05p37_155465_c1 3300050507 Bacteria 2795
166 nmdc:mga05p37_2105_c1 3300050507 Bacteria 23247
167 nmdc:mga05p37_2944_c1 3300050507 Bacteria 19766
168 nmdc:mga05p37_48251_c1 3300050507 Bacteria 5238
169 nmdc:mga05p37_81872_c1 3300050507 Bacteria 3977
170 nmdc:mga05p37_884783_c1 3300050507 Bacteria 965
171 nmdc:mga09592_3046_c1 3300050508 Bacteria 13599
172 nmdc:mga09592_795880_c1 3300050508 Bacteria 800
173 nmdc:mga0qj67_212855_c1 3300050509 Bacteria 1569
174 nmdc:mga0qj67_5118_c1 3300050509 Bacteria 9547
175 nmdc:mga06r32_6086_c1 3300050510 Bacteria 10838
176 nmdc:mga08y16_17395_c1 3300050511 Bacteria 7570
177 nmdc:mga08y16_300769_c1 3300050511 Bacteria 1654
178 nmdc:mga08y16_82003_c1 3300050511 Bacteria 3362
179 nmdc:mga08y16_90300_c1 3300050511 Bacteria 3193
180 nmdc:mga0n895_18691_c1 3300050512 Bacteria 6420
181 nmdc:mga0n895_217977_c1 3300050512 Bacteria 1938
182 nmdc:mga0n895_24665_c1 3300050512 Bacteria 5670
183 nmdc:mga0n895_92640_c1 3300050512 Bacteria 3025
184 nmdc:mga0rr50_23267_c1 3300050513 Bacteria 4269
185 nmdc:mga0rr50_436376_c1 3300050513 Bacteria 1109
186 nmdc:mga0rr50_46761_c1 3300050513 Bacteria 3187
187 nmdc:mga08x19_40890_c1 3300050514 Bacteria 2952
188 nmdc:mga0a205_167214_c1 3300050515 Bacteria 2095
189 nmdc:mga0a205_28107_c1 3300050515 Bacteria 5375
190 nmdc:mga0a205_320938_c1 3300050515 Bacteria 1420
191 nmdc:mga0a205_58554_c2 3300050515 Bacteria 1894
192 nmdc:mga0a205_662436_c1 3300050515 Bacteria 895
193 Ga0495595_0133089 3300053084 Bacteria 1217
194 Ga0500641_0011458 3300053096 Bacteria 3218
195 Ga0590071_004527 3300059421 Bacteria 3372
196 Ga0590075_008732 3300059424 Bacteria 2424
197 Ga0590077_000702 3300059426 Bacteria 8847
198 Ga0501082_0336551 3300060353 Bacteria 1315
199 Ga0207651_10088591
200 JGI24751J29686_10006086
201 Ga0065715_10106016
202 Ga0070683_100222278
203 Ga0070670_100074251
204 Ga0070670_100194124
205 Ga0070670_100414105
206 Ga0070666_10154972
207 Ga0070680_100203160
208 Ga0070660_100004015
209 Ga0070689_100230411
210 Ga0070675_100001310
211 Ga0070675_100007188
212 Ga0070675_100014548
213 Ga0070675_100071448
214 Ga0070673_100174095
215 Ga0070688_100232016
216 Ga0070711_100415993
217 Ga0070681_10407820
218 Ga0070685_10262318
219 Ga0070698_100006737
220 Ga0070699_100001199
221 Ga0070679_100277893
222 Ga0068853_100182593
223 Ga0070672_100069506
224 Ga0070686_100483467
225 Ga0070693_100209172
226 Ga0070704_100001151
227 Ga0070704_100027320
228 Ga0068855_100025383
229 Ga0070664_100704320
230 Ga0068856_100043008
231 Ga0068859_100026449
232 Ga0068859_101308583
233 Ga0068864_100221878
234 Ga0068866_10163574
235 Ga0068861_100140579
236 Ga0068870_10003926
237 Ga0068863_100201479
238 Ga0068858_100034247
239 Ga0068858_100170025
240 Ga0068860_100666450
241 Ga0068862_100010794
242 Ga0081539_10001136
243 Ga0081539_10004921
244 Ga0097621_100217096
245 Ga0097621_100266539
246 Ga0097621_100381360
247 Ga0068871_100124493
248 Ga0075428_100003353
249 Ga0075428_100449023
250 Ga0075431_100001181
251 Ga0075433_10129195
252 Ga0075433_10209767
253 Ga0075433_10220317
254 Ga0075434_100019897
255 Ga0075434_100023841
256 Ga0075434_100403104
257 Ga0097620_100026449
258 Ga0097620_101308802
259 Ga0075435_100287440
260 Ga0105240_10067435
261 Ga0105240_10087553
262 Ga0111539_10000126
263 Ga0111539_10002429
264 Ga0111539_10125419
265 Ga0114129_10000772
266 Ga0114129_10001185
267 Ga0114129_10001820
268 Ga0114129_10042168
269 Ga0114129_10103088
270 Ga0114129_10121255
271 Ga0105242_10010749
272 Ga0105242_10436589
273 Ga0105248_10226642
274 Ga0105248_10909889
275 Ga0105249_10353842
276 Ga0105249_10478073
277 Ga0105249_10890644
278 Ga0157370_10265269
279 Ga0157374_10226308
280 Ga0157374_10848032
281 Ga0163162_10015236
282 Ga0163162_10530333
283 Ga0163162_10654225
284 Ga0163162_11302863
285 Ga0157372_10455607
286 Ga0157372_10891368
287 Ga0157375_10167853
288 Ga0157375_10175252
289 Ga0157375_10226658
290 Ga0157375_10420366
291 Ga0157380_10045525
292 Ga0157380_10749722
293 Ga0163161_10034016
294 Ga0163161_10573397
295 Ga0207682_10220054
296 Ga0207645_10154426
297 Ga0207695_10042226
298 Ga0207663_10351588
299 Ga0207657_10022684
300 Ga0207646_10158060
301 Ga0207681_10168512
302 Ga0207650_10062026
303 Ga0207650_10156202
304 Ga0207650_10167723
305 Ga0207659_10000076
306 Ga0207659_10007778
307 Ga0207659_10272402
308 Ga0207659_10333359
309 Ga0207644_10420045
310 Ga0207706_10548183
311 Ga0207691_10077704
312 Ga0207711_10063206
313 Ga0207689_10148669
314 Ga0207661_10267397
315 Ga0207703_10346428
316 Ga0207702_10461220
317 Ga0207676_10103151
318 Ga0207675_100168440
319 Ga0207675_100717710
320 Ga0207683_10066690
321 Ga0207683_10422487
322 Ga0207428_10218794
323 Ga0268265_10052118
324 Ga0307408_100548797
325 Ga0307405_10289715
326 Ga0307409_100139200
327 Ga0307416_100095017
328 Ga0307411_10760308
329 Ga0373957_0071848
330 Ga0451853_3556378
331 Ga0439433_0004627
332 Ga0439446_0038591
333 Ga0439444_0030825
334 Ga0439460_0006671
335 Ga0451577_0023245
336 Ga0451576_0057065
337 Ga0495603_0020172
338 Ga0495639_0404205
339 Ga0495664_0102857
340 Ga0495594_0064202
341 Ga0495643_0004689
342 Ga0495642_0009824
343 Ga0495598_0004718
344 Ga0495667_0160966
345 Ga0495634_0267985
346 Ga0495659_0015571
347 Ga0495659_0016127
348 Ga0495659_0143028
349 Ga0495588_0002823
350 Ga0495674_0092077
351 Ga0496101_0390299
352 Ga0496104_0202091
353 Ga0496114_0080077
354 Ga0501041_0146980
355 Ga0501047_0054943
356 Ga0501067_0028326
357 Ga0501249_030822
358 Ga0501080_1061836
359 Ga0501263_025076
360 Ga0501045_0059321
361 nmdc:mga05p37_14944_c1
362 nmdc:mga05p37_15091_c1
363 nmdc:mga05p37_155465_c1
364 nmdc:mga05p37_2105_c1
365 nmdc:mga05p37_2944_c1
366 nmdc:mga05p37_48251_c1
367 nmdc:mga05p37_81872_c1
368 nmdc:mga05p37_884783_c1
369 nmdc:mga09592_3046_c1
370 nmdc:mga09592_795880_c1
371 nmdc:mga0qj67_212855_c1
372 nmdc:mga0qj67_5118_c1
373 nmdc:mga06r32_6086_c1
374 nmdc:mga08y16_17395_c1
375 nmdc:mga08y16_300769_c1
376 nmdc:mga08y16_82003_c1
377 nmdc:mga08y16_90300_c1
378 nmdc:mga0n895_18691_c1
379 nmdc:mga0n895_217977_c1
380 nmdc:mga0n895_24665_c1
381 nmdc:mga0n895_92640_c1
382 nmdc:mga0rr50_23267_c1
383 nmdc:mga0rr50_436376_c1
384 nmdc:mga0rr50_46761_c1
385 nmdc:mga08x19_40890_c1
386 nmdc:mga0a205_167214_c1
387 nmdc:mga0a205_28107_c1
388 nmdc:mga0a205_320938_c1
389 nmdc:mga0a205_58554_c2
390 nmdc:mga0a205_662436_c1
391 Ga0495595_0133089
392 Ga0500641_0011458
393 Ga0590071_004527
394 Ga0590075_008732
395 Ga0590077_000702
396 Ga0501082_0336551

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00730

HhH-GPD

HhH-GPD superfamily base excision DNA repair protein

67

201

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1kg4-assembly1.cif.gz_A crystal structure of the k142a mutant of e. coli muty (core fragment) 0.9629 24 230
1kg7-assembly1.cif.gz_A crystal structure of the e161a mutant of e.coli muty (core fragment) 0.9617 24 230
1kqj-assembly1.cif.gz_A crystal structure of a mutant of muty catalytic domain 0.9613 24 230
1kg5-assembly1.cif.gz_A crystal structure of the k142q mutant of e.coli muty (core fragment) 0.9587 24 230
1kg6-assembly1.cif.gz_A crystal structure of the k142r mutant of e.coli muty (core fragment) 0.9585 24 230
ID Description Score Start End Superfamily
1kg2A02 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9475 41 149 1.10.340.30
1rrqA02 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9426 41 151 1.10.340.30
3n5nX01 Mainly Alpha;Orthogonal Bundle;Endonuclease Iii, domain 2;Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.9373 155 230 1.10.1670.10
1keaA02 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9301 41 152 1.10.340.30
1rrqA02 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9266 41 151 1.10.340.30
ID Description Score Start End GO Terms
AF-A0A7Y4TGH6-F1-model_v4 A/G-specific adenine glycosylase 0.9885 17 235 GO:0000701
GO:0006284
GO:0006298
GO:0032357
GO:0034039
GO:0035485
GO:0046872
GO:0051539
AF-A0A2V8HRE2-F1-model_v4 Adenine glycosylase 0.9882 17 210 GO:0000701
GO:0006284
GO:0006298
GO:0032357
GO:0034039
GO:0035485
GO:0046872
GO:0051536
AF-A0A7W1P9Z0-F1-model_v4 A/G-specific adenine glycosylase 0.9868 16 232 GO:0000701
GO:0006284
GO:0006298
GO:0032357
GO:0034039
GO:0035485
GO:0046872
GO:0051536
AF-A0A1F2RW74-F1-model_v4 Adenine DNA glycosylase (EC 3.2.2.31) 0.9842 14 230 GO:0000701
GO:0006284
GO:0006298
GO:0032357
GO:0034039
GO:0035485
GO:0046872
GO:0051539
AF-A0A7Y5U1Z6-F1-model_v4 A/G-specific adenine glycosylase 0.9815 32 235 GO:0000701
GO:0006284
GO:0006298
GO:0032357
GO:0034039
GO:0035485
GO:0046872
GO:0051536

Map