F300090

General Info

Members Datasets Scaffolds Average Seq Length
195 151 178 290

Family's Representative Sequence

Representative Sequence 3300013105|Ga0157369_10553979|Ga0157369_105539792
Length 308
Sequence MTILVSGKNGQLGKELQDIASSHENLQFIFFDREELNIADNASLQAAFQKYSPSVFINCAAYTAVDKAETEQEKAFRINAEAVSNIAKNCRQFKTKLVHISTDYVFDGRATQPYNEDDKTDPVNYYGYTKWLGEQLALNNNPDTIVIRTSWVYSTYGNNFVKTMLRLMKERKEINVVNDQLGSPTYAKDLAEAIMSIVNGQWSMVNDEAVNRESSNVNLQSQETHHSPLTTNIYHFSNEGIISWYDFAVAIKEIKHLDCIVNPIPTTAYPTPAKRPAYSVFDKTKIKNTFNIQLKEWRDSLSLCLQHL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2818991444 Filimonas endophytica 3197 Isolate Unclassified
4 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
5 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
6 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
7 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
8 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
9 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
10 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
11 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
12 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
13 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
14 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
15 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
16 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
17 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
18 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
19 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
20 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
21 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
22 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
23 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
24 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
28 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
29 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
30 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
31 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
32 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
33 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
34 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
35 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
38 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
39 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
40 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
41 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
42 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
43 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
44 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
45 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
46 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
47 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
48 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
49 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
50 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
51 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
52 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
53 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
54 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
55 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
56 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
57 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
60 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
61 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
62 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
63 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
66 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
67 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
68 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
69 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
70 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
71 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
72 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
73 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
75 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
76 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
79 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
81 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
83 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
100 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
101 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
102 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
103 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
104 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
105 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
106 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
107 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
108 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
109 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
110 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
111 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
112 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
113 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
114 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
115 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
116 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
117 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
118 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
119 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
120 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
121 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
122 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
123 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
126 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
130 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
131 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
132 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
133 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
134 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
135 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
136 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
137 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
138 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
139 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
140 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
141 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
142 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
143 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
144 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
145 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
146 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
147 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
148 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
149 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
150 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
151 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.28
Metatranscriptomes 0
Isolates 8.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.18
Nodule 0
Rhizoplane 0.51
Rhizosphere 53.33
Stem 0
Stem Tuber 0
Unclassified 18.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2511378 2162886007 Bacteria 1551
2 JGI24740J21852_10003694 3300001979 Bacteria 6668
3 JGI24739J22299_10002519 3300001989 Bacteria 7064
4 JGI24737J22298_10047622 3300001990 Bacteria 1306
5 JGI25154J39366_1000001 3300002738 Bacteria 483450
6 JGI25153J46596_10000209 3300003215 Bacteria 52915
7 rootH1_10190630 3300003316 Bacteria 1130
8 rootH2_10037436 3300003320 Bacteria 5523
9 rootH2_10169017 3300003320 Bacteria 2944
10 rootH2_10194414 3300003320 Unclassified 2376
11 rootL2_10060315 3300003322 Bacteria 4115
12 rootL2_10073425 3300003322 Bacteria 10286
13 rootL2_10161783 3300003322 Bacteria 1884
14 rootL2_10165814 3300003322 Bacteria 1417
15 rootL2_10165815 3300003322 Bacteria 4879
16 rootL2_10241845 3300003322 Bacteria 1622
17 rootL2_10241846 3300003322 Bacteria 2023
18 rootL2_10362531 3300003322 Bacteria 1346
19 rootH1_10027127 3300003323 Bacteria 41560
20 rootH1_10043692 3300003323 Bacteria 17024
21 JGI25160J50197_1014158 3300003354 Bacteria 2681
22 JGI25160J50197_1017456 3300003354 Bacteria 2273
23 Ga0055535_1004733 3300003761 Bacteria 3202
24 Ga0055542_1003720 3300003762 Bacteria 3987
25 Ga0055526_1013843 3300003771 Bacteria 3373
26 Ga0055528_1000308 3300003790 Bacteria 41407
27 Ga0055528_1000809 3300003790 Bacteria 21549
28 Ga0055530_10000385 3300003791 Bacteria 39749
29 Ga0055531_10000027 3300003794 Bacteria 160284
30 Ga0055543_1005820 3300004625 Bacteria 3087
31 Ga0065165_1000053 3300005262 Bacteria 189081
32 Ga0065704_10101346 3300005289 Bacteria 2240
33 Ga0070676_10005721 3300005328 Bacteria 6625
34 Ga0070683_100286387 3300005329 Bacteria 1567
35 Ga0068869_100076841 3300005334 Bacteria 2483
36 Ga0070682_100081798 3300005337 Bacteria 2092
37 Ga0070675_100302829 3300005354 Bacteria 1409
38 Ga0070659_100026389 3300005366 Bacteria 4470
39 Ga0070659_100036322 3300005366 Bacteria 3841
40 Ga0070667_100036339 3300005367 Bacteria 4130
41 Ga0068867_100003111 3300005459 Bacteria 11700
42 Ga0070679_100102393 3300005530 Bacteria 2849
43 Ga0070693_100080274 3300005547 Bacteria 1943
44 Ga0068855_100099357 3300005563 Bacteria 3352
45 Ga0068857_100092965 3300005577 Bacteria 2701
46 Ga0068852_100256401 3300005616 Bacteria 1677
47 Ga0068859_100001403 3300005617 Bacteria 24458
48 Ga0068864_100185519 3300005618 Bacteria 1904
49 Ga0068866_10009735 3300005718 Bacteria 4092
50 Ga0068861_100081018 3300005719 Bacteria 2540
51 Ga0068861_100674895 3300005719 Bacteria 957
52 Ga0068851_10147052 3300005834 Bacteria 1286
53 Ga0068860_100022405 3300005843 Bacteria 6110
54 Ga0068862_100213371 3300005844 Bacteria 1745
55 Ga0075366_10031217 3300006195 Bacteria 3135
56 Ga0075366_10045785 3300006195 Bacteria 2592
57 Ga0097620_100001403 3300006931 Bacteria 24458
58 Ga0114129_10005196 3300009147 Bacteria 18339
59 Ga0105243_10166334 3300009148 Bacteria 1906
60 Ga0105242_10070975 3300009176 Bacteria 2889
61 Ga0105239_10009606 3300010375 Bacteria 10882
62 Ga0105239_10056612 3300010375 Bacteria 4301
63 Ga0105239_10184915 3300010375 Unclassified 2332
64 Ga0105239_10428028 3300010375 Bacteria 1500
65 Ga0157371_10141251 3300013102 Bacteria 1715
66 Ga0157370_10090259 3300013104 Bacteria 2877
67 Ga0157369_10048710 3300013105 Bacteria 4597
68 Ga0157369_10553979 3300013105 Bacteria 1188
69 Ga0157374_10157581 3300013296 Bacteria 2210
70 Ga0157374_10354046 3300013296 Bacteria 1459
71 Ga0157378_10002163 3300013297 Bacteria 17451
72 Ga0157378_10024628 3300013297 Bacteria 5298
73 Ga0157378_10037125 3300013297 Bacteria 4314
74 Ga0163162_10000795 3300013306 Bacteria 29353
75 Ga0163162_10386182 3300013306 Unclassified 1533
76 Ga0157372_10169407 3300013307 Bacteria 2526
77 Ga0157372_10289948 3300013307 Bacteria 1903
78 Ga0182005_1000081 3300015265 Bacteria 73899
79 Ga0213876_10011427 3300021384 Bacteria 4740
80 Ga0209436_100566 3300025208 Bacteria 15905
81 Ga0209258_100041 3300025242 Bacteria 381381
82 Ga0209646_1000002 3300025246 Bacteria 1425781
83 Ga0209026_1000233 3300025250 Bacteria 74825
84 Ga0209148_1000090 3300025254 Bacteria 250982
85 Ga0209673_1000034 3300025273 Bacteria 328788
86 Ga0209130_1001027 3300025284 Bacteria 21399
87 Ga0209564_1007361 3300025295 Bacteria 5700
88 Ga0209564_1017740 3300025295 Bacteria 2754
89 Ga0209758_1000419 3300025297 Bacteria 72133
90 Ga0209758_1010230 3300025297 Bacteria 5654
91 Ga0209758_1016150 3300025297 Bacteria 3808
92 Ga0209758_1017026 3300025297 Bacteria 3650
93 Ga0209050_1000353 3300025298 Bacteria 88509
94 Ga0207426_1000177 3300025302 Bacteria 159426
95 Ga0207426_1000324 3300025302 Bacteria 91661
96 Ga0207426_1000592 3300025302 Bacteria 47901
97 Ga0209257_1000001 3300025304 Bacteria 2274655
98 Ga0209257_1001792 3300025304 Bacteria 23622
99 Ga0207649_10319758 3300025920 Bacteria 1140
100 Ga0207652_10139406 3300025921 Bacteria 2168
101 Ga0207690_10008420 3300025932 Bacteria 6123
102 Ga0207690_10278679 3300025932 Bacteria 1301
103 Ga0207686_10108611 3300025934 Bacteria 1867
104 Ga0207669_10253708 3300025937 Bacteria 1311
105 Ga0207689_10028535 3300025942 Bacteria 4669
106 Ga0207661_10056662 3300025944 Bacteria 3147
107 Ga0207667_10028462 3300025949 Bacteria 6070
108 Ga0207658_10079152 3300025986 Bacteria 2513
109 Ga0207641_10017838 3300026088 Bacteria 5816
110 Ga0207648_10000653 3300026089 Bacteria 38843
111 Ga0207676_10369873 3300026095 Bacteria 1331
112 Ga0207675_100304134 3300026118 Bacteria 1554
113 Ga0268265_10114481 3300028380 Bacteria 2209
114 Ga0268265_10204963 3300028380 Unclassified 1714
115 Ga0268264_10003011 3300028381 Bacteria 14612
116 Ga0268264_10030622 3300028381 Bacteria 4411
117 Ga0307515_10246204 3300028794 Bacteria 1549
118 Ga0307512_10205397 3300030522 Unclassified 1058
119 Ga0265327_10000054 3300031251 Bacteria 250337
120 Ga0307513_10055529 3300031456 Bacteria 4237
121 Ga0307513_10131661 3300031456 Bacteria 2446
122 Ga0307513_10299643 3300031456 Bacteria 1375
123 Ga0395899_0001461 3300037312 Bacteria 20134
124 Ga0395900_0002994 3300037418 Bacteria 18381
125 Ga0395900_0017893 3300037418 Bacteria 7233
126 Ga0395898_0001093 3300037466 Bacteria 41845
127 Ga0436365_0743066 3300039437 Bacteria 16060
128 Ga0439436_0008281 3300041404 Bacteria 3195
129 Ga0439439_0005521 3300041406 Bacteria 2891
130 Ga0451807_1653131 3300041486 Bacteria 1127
131 Ga0439431_0061521 3300041997 Unclassified 989
132 Ga0439457_002683 3300042014 Bacteria 5012
133 Ga0439457_023571 3300042014 Bacteria 1362
134 Ga0466969_0004518 3300044656 Bacteria 7409
135 Ga0466972_0069050 3300044658 Bacteria 1688
136 Ga0466965_0055007 3300044683 Bacteria 1980
137 Ga0466966_0000030 3300044684 Bacteria 103300
138 Ga0466968_0082413 3300044735 Bacteria 1416
139 Ga0466970_0096147 3300044765 Bacteria 1611
140 Ga0466957_0005372 3300044842 Bacteria 7192
141 Ga0466959_0000269 3300045049 Bacteria 31896
142 Ga0466959_0041407 3300045049 Bacteria 3401
143 Ga0495627_028013 3300046453 Bacteria 1802
144 Ga0495633_0000175 3300046558 Bacteria 83653
145 Ga0495668_0014109 3300046616 Bacteria 4694
146 Ga0495674_0392859 3300047319 Bacteria 1121
147 Ga0496121_0000030 3300048924 Bacteria 412079
148 Ga0496126_0008948 3300048929 Bacteria 10722
149 Ga0501033_0344680 3300049570 Bacteria 1044
150 Ga0501037_0039818 3300049573 Bacteria 3459
151 Ga0501047_0132158 3300049581 Bacteria 2376
152 Ga0501047_0180723 3300049581 Bacteria 1976
153 Ga0501080_0464773 3300049742 Bacteria 1133
154 Ga0501241_000727 3300049758 Bacteria 7122
155 Ga0501044_0431276 3300049823 Bacteria 1227
156 nmdc:mga0k408_54257_c1 3300050493 Bacteria 2323
157 nmdc:mga05p37_3553_c1 3300050507 Bacteria 18203
158 Ga0500644_0000182 3300053088 Bacteria 40141
159 Ga0500644_0052307 3300053088 Unclassified 1406
160 Ga0500644_0053708 3300053088 Bacteria 1392
161 Ga0500646_0008633 3300053090 Bacteria 2608
162 Ga0500646_0009602 3300053090 Bacteria 2476
163 Ga0500583_0001301 3300053092 Bacteria 7130
164 Ga0500583_0002176 3300053092 Bacteria 5822
165 Ga0500651_0045584 3300053093 Bacteria 2758
166 Ga0500562_000008 3300053108 Bacteria 188332
167 Ga0500569_000784 3300053109 Bacteria 5565
168 Ga0500607_096281 3300053121 Bacteria 1479
169 Ga0500652_003516 3300053131 Bacteria 4754
170 Ga0500658_0002862 3300053134 Bacteria 6622
171 Ga0500559_0005004 3300053136 Bacteria 6153
172 Ga0500568_0075272 3300053139 Bacteria 1287
173 Ga0500577_0000633 3300053142 Bacteria 9007
174 Ga0500589_087434 3300053147 Bacteria 1380
175 Ga0500590_064656 3300053148 Bacteria 1831
176 Ga0500616_0015819 3300053153 Bacteria 4307
177 Ga0500622_0000852 3300053156 Bacteria 26070
178 Ga0500633_0009908 3300053160 Bacteria 2525

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049742 Ga0501080_0464773 Ga0501080_0464773_337_1122 247
2 3300049823 Ga0501044_0431276 Ga0501044_0431276_32_817 247
3 3300005530 Ga0070679_100102393 Ga0070679_1001023934 256
4 3300025921 Ga0207652_10139406 Ga0207652_101394062 256
5 3300003316 rootH1_10190630 rootH1_101906301 274
6 iso_pu_bacteria 2919177583 2919178262 278
7 iso_pu_bacteria 2818991442 2819573230 279
8 iso_pu_bacteria 2818991460 2819681938 279
9 iso_pu_bacteria 2821136567 2821136650 279
10 iso_pu_bacteria 2884791551 2884795985 279
11 iso_pu_bacteria 2904467357 2904468605 279
12 iso_pu_bacteria 2929177148 2929178506 279
13 iso_pu_bacteria 2929239360 2929240839 279
14 iso_pu_bacteria 2929921140 2929922880 279
15 iso_pu_bacteria 2945977869 2945980906 279
16 iso_pu_bacteria 2946013367 2946019692 279
17 iso_pu_bacteria 8003151029 8003154706 279
18 3300013307 Ga0157372_10169407 Ga0157372_101694072 280
19 3300025920 Ga0207649_10319758 Ga0207649_103197582 280
20 iso_pu_bacteria 2898713307 2898713795 280
21 3300005337 Ga0070682_100081798 Ga0070682_1000817982 281
22 3300005547 Ga0070693_100080274 Ga0070693_1000802743 281
23 3300045049 Ga0466959_0041407 Ga0466959_0041407_119_982 281
24 iso_pu_bacteria 2904780799 2904782575 281
25 3300001979 JGI24740J21852_10003694 JGI24740J21852_100036945 282
26 3300001989 JGI24739J22299_10002519 JGI24739J22299_100025197 282
27 3300001990 JGI24737J22298_10047622 JGI24737J22298_100476222 282
28 3300002738 JGI25154J39366_1000001 JGI25154J39366_1000001163 282
29 3300003215 JGI25153J46596_10000209 JGI25153J46596_1000020931 282
30 3300003320 rootH2_10037436 rootH2_100374364 282
31 3300003320 rootH2_10169017 rootH2_101690172 282
32 3300003322 rootL2_10073425 rootL2_100734253 282
33 3300003322 rootL2_10161783 rootL2_101617832 282
34 3300003322 rootL2_10241845 rootL2_102418451 282
35 3300003322 rootL2_10241846 rootL2_102418462 282
36 3300003322 rootL2_10362531 rootL2_103625311 282
37 3300003323 rootH1_10043692 rootH1_1004369217 282
38 3300003354 JGI25160J50197_1014158 JGI25160J50197_10141583 282
39 3300003354 JGI25160J50197_1017456 JGI25160J50197_10174562 282
40 3300003761 Ga0055535_1004733 Ga0055535_10047333 282
41 3300003762 Ga0055542_1003720 Ga0055542_10037203 282
42 3300003771 Ga0055526_1013843 Ga0055526_10138432 282
43 3300003790 Ga0055528_1000308 Ga0055528_10003083 282
44 3300003790 Ga0055528_1000809 Ga0055528_100080919 282
45 3300003791 Ga0055530_10000385 Ga0055530_100003855 282
46 3300003794 Ga0055531_10000027 Ga0055531_10000027107 282
47 3300004625 Ga0055543_1005820 Ga0055543_10058203 282
48 3300005262 Ga0065165_1000053 Ga0065165_100005366 282
49 3300005563 Ga0068855_100099357 Ga0068855_1000993575 282
50 3300005616 Ga0068852_100256401 Ga0068852_1002564012 282
51 3300005618 Ga0068864_100185519 Ga0068864_1001855192 282
52 3300010375 Ga0105239_10009606 Ga0105239_100096063 282
53 3300010375 Ga0105239_10056612 Ga0105239_100566123 282
54 3300010375 Ga0105239_10428028 Ga0105239_104280282 282
55 3300013102 Ga0157371_10141251 Ga0157371_101412512 282
56 3300013104 Ga0157370_10090259 Ga0157370_100902593 282
57 3300013105 Ga0157369_10048710 Ga0157369_100487102 282
58 3300013105 Ga0157369_10553979 Ga0157369_105539792 282
59 3300013296 Ga0157374_10354046 Ga0157374_103540462 282
60 3300013297 Ga0157378_10024628 Ga0157378_100246285 282
61 3300013306 Ga0163162_10386182 Ga0163162_103861822 282
62 3300015265 Ga0182005_1000081 Ga0182005_10000813 282
63 3300021384 Ga0213876_10011427 Ga0213876_100114272 282
64 3300025208 Ga0209436_100566 Ga0209436_1005663 282
65 3300025242 Ga0209258_100041 Ga0209258_10004187 282
66 3300025246 Ga0209646_1000002 Ga0209646_1000002163 282
67 3300025250 Ga0209026_1000233 Ga0209026_100023317 282
68 3300025254 Ga0209148_1000090 Ga0209148_1000090148 282
69 3300025273 Ga0209673_1000034 Ga0209673_1000034131 282
70 3300025284 Ga0209130_1001027 Ga0209130_100102710 282
71 3300025295 Ga0209564_1007361 Ga0209564_10073613 282
72 3300025295 Ga0209564_1017740 Ga0209564_10177402 282
73 3300025297 Ga0209758_1000419 Ga0209758_100041948 282
74 3300025297 Ga0209758_1010230 Ga0209758_10102302 282
75 3300025297 Ga0209758_1016150 Ga0209758_10161504 282
76 3300025297 Ga0209758_1017026 Ga0209758_10170264 282
77 3300025298 Ga0209050_1000353 Ga0209050_100035369 282
78 3300025302 Ga0207426_1000177 Ga0207426_1000177110 282
79 3300025302 Ga0207426_1000324 Ga0207426_100032412 282
80 3300025302 Ga0207426_1000592 Ga0207426_100059214 282
81 3300025304 Ga0209257_1000001 Ga0209257_10000011807 282
82 3300025304 Ga0209257_1001792 Ga0209257_10017925 282
83 3300025944 Ga0207661_10056662 Ga0207661_100566623 282
84 3300025949 Ga0207667_10028462 Ga0207667_100284625 282
85 3300031456 Ga0307513_10299643 Ga0307513_102996432 282
86 3300039437 Ga0436365_0743066 Ga0436365_0743066_5073_5951 282
87 3300042014 Ga0439457_023571 Ga0439457_023571_22_885 282
88 3300044656 Ga0466969_0004518 Ga0466969_0004518_3589_4500 282
89 3300044683 Ga0466965_0055007 Ga0466965_0055007_208_1074 282
90 3300044684 Ga0466966_0000030 Ga0466966_0000030_36600_37511 282
91 3300044735 Ga0466968_0082413 Ga0466968_0082413_89_961 282
92 3300044765 Ga0466970_0096147 Ga0466970_0096147_470_1381 282
93 3300045049 Ga0466959_0000269 Ga0466959_0000269_12063_12974 282
94 3300046453 Ga0495627_028013 Ga0495627_028013_330_1193 282
95 3300046558 Ga0495633_0000175 Ga0495633_0000175_73190_74053 282
96 3300046616 Ga0495668_0014109 Ga0495668_0014109_2365_3318 282
97 3300047319 Ga0495674_0392859 Ga0495674_0392859_152_1033 282
98 3300048924 Ga0496121_0000030 Ga0496121_0000030_309471_310334 282
99 3300048929 Ga0496126_0008948 Ga0496126_0008948_3946_4809 282
100 3300049570 Ga0501033_0344680 Ga0501033_0344680_81_947 282
101 3300049573 Ga0501037_0039818 Ga0501037_0039818_340_1239 282
102 3300049758 Ga0501241_000727 Ga0501241_000727_585_1448 282
103 3300050493 nmdc:mga0k408_54257_c1 nmdc:mga0k408_54257_c1_1031_1897 282
104 3300053088 Ga0500644_0000182 Ga0500644_0000182_13220_14083 282
105 3300053092 Ga0500583_0002176 Ga0500583_0002176_1298_2161 282
106 3300053093 Ga0500651_0045584 Ga0500651_0045584_333_1196 282
107 3300053121 Ga0500607_096281 Ga0500607_096281_298_1161 282
108 3300053131 Ga0500652_003516 Ga0500652_003516_2382_3248 282
109 3300053136 Ga0500559_0005004 Ga0500559_0005004_2105_2968 282
110 3300053139 Ga0500568_0075272 Ga0500568_0075272_300_1166 282
111 3300053148 Ga0500590_064656 Ga0500590_064656_118_981 282
112 3300053160 Ga0500633_0009908 Ga0500633_0009908_809_1672 282
113 3300003320 rootH2_10194414 rootH2_101944142 283
114 3300003322 rootL2_10060315 rootL2_100603153 283
115 3300003322 rootL2_10165815 rootL2_101658152 283
116 3300003323 rootH1_10027127 rootH1_1002712712 283
117 3300005366 Ga0070659_100036322 Ga0070659_1000363225 283
118 3300006195 Ga0075366_10031217 Ga0075366_100312172 283
119 3300013307 Ga0157372_10289948 Ga0157372_102899482 283
120 3300025932 Ga0207690_10008420 Ga0207690_100084207 283
121 3300028794 Ga0307515_10246204 Ga0307515_102462041 283
122 3300030522 Ga0307512_10205397 Ga0307512_102053971 283
123 3300031251 Ga0265327_10000054 Ga0265327_10000054145 283
124 3300031456 Ga0307513_10131661 Ga0307513_101316612 283
125 3300041486 Ga0451807_1653131 Ga0451807_1653131_231_1106 283
126 3300044842 Ga0466957_0005372 Ga0466957_0005372_3410_4285 283
127 3300053090 Ga0500646_0008633 Ga0500646_0008633_966_1841 283
128 3300053090 Ga0500646_0009602 Ga0500646_0009602_238_1104 283
129 3300053092 Ga0500583_0001301 Ga0500583_0001301_6143_7018 283
130 3300053109 Ga0500569_000784 Ga0500569_000784_4387_5253 283
131 3300053134 Ga0500658_0002862 Ga0500658_0002862_2030_2896 283
132 3300053142 Ga0500577_0000633 Ga0500577_0000633_312_1178 283
133 3300053147 Ga0500589_087434 Ga0500589_087434_194_1069 283
134 3300053153 Ga0500616_0015819 Ga0500616_0015819_173_1039 283
135 iso_pu_bacteria 2818991444 2819586795 283
136 iso_pu_bacteria 2896317667 2896318959 283
137 iso_pu_bacteria 2929154850 2929155481 283
138 3300003322 rootL2_10165814 rootL2_101658141 284
139 3300005367 Ga0070667_100036339 Ga0070667_1000363393 284
140 3300005617 Ga0068859_100001403 Ga0068859_1000014035 284
141 3300006931 Ga0097620_100001403 Ga0097620_1000014035 284
142 3300013296 Ga0157374_10157581 Ga0157374_101575812 284
143 3300013297 Ga0157378_10037125 Ga0157378_100371252 284
144 3300025986 Ga0207658_10079152 Ga0207658_100791523 284
145 3300028381 Ga0268264_10030622 Ga0268264_100306222 284
146 3300031456 Ga0307513_10055529 Ga0307513_100555295 284
147 3300041404 Ga0439436_0008281 Ga0439436_0008281_1033_1911 284
148 3300041406 Ga0439439_0005521 Ga0439439_0005521_628_1506 284
149 3300042014 Ga0439457_002683 Ga0439457_002683_3878_4756 284
150 3300049581 Ga0501047_0132158 Ga0501047_0132158_1314_2192 284
151 3300049581 Ga0501047_0180723 Ga0501047_0180723_11_889 284
152 3300053088 Ga0500644_0052307 Ga0500644_0052307_242_1120 284
153 2162886007 SwRhRL2b_contig_2511378 SwRhRL2b_0613.00005170 285
154 3300005289 Ga0065704_10101346 Ga0065704_101013461 285
155 3300005328 Ga0070676_10005721 Ga0070676_100057215 285
156 3300005329 Ga0070683_100286387 Ga0070683_1002863871 285
157 3300005334 Ga0068869_100076841 Ga0068869_1000768411 285
158 3300005354 Ga0070675_100302829 Ga0070675_1003028292 285
159 3300005366 Ga0070659_100026389 Ga0070659_1000263892 285
160 3300005459 Ga0068867_100003111 Ga0068867_1000031117 285
161 3300005577 Ga0068857_100092965 Ga0068857_1000929654 285
162 3300005718 Ga0068866_10009735 Ga0068866_100097354 285
163 3300005719 Ga0068861_100081018 Ga0068861_1000810183 285
164 3300005719 Ga0068861_100674895 Ga0068861_1006748951 285
165 3300005834 Ga0068851_10147052 Ga0068851_101470522 285
166 3300005843 Ga0068860_100022405 Ga0068860_1000224056 285
167 3300005844 Ga0068862_100213371 Ga0068862_1002133713 285
168 3300006195 Ga0075366_10045785 Ga0075366_100457853 285
169 3300009147 Ga0114129_10005196 Ga0114129_1000519611 285
170 3300009148 Ga0105243_10166334 Ga0105243_101663342 285
171 3300009176 Ga0105242_10070975 Ga0105242_100709753 285
172 3300010375 Ga0105239_10184915 Ga0105239_101849152 285
173 3300013297 Ga0157378_10002163 Ga0157378_1000216312 285
174 3300013306 Ga0163162_10000795 Ga0163162_1000079520 285
175 3300025932 Ga0207690_10278679 Ga0207690_102786792 285
176 3300025934 Ga0207686_10108611 Ga0207686_101086111 285
177 3300025937 Ga0207669_10253708 Ga0207669_102537083 285
178 3300025942 Ga0207689_10028535 Ga0207689_100285352 285
179 3300026088 Ga0207641_10017838 Ga0207641_100178385 285
180 3300026089 Ga0207648_10000653 Ga0207648_1000065327 285
181 3300026095 Ga0207676_10369873 Ga0207676_103698731 285
182 3300026118 Ga0207675_100304134 Ga0207675_1003041343 285
183 3300028380 Ga0268265_10114481 Ga0268265_101144813 285
184 3300028380 Ga0268265_10204963 Ga0268265_102049632 285
185 3300028381 Ga0268264_10003011 Ga0268264_100030119 285
186 3300037312 Ga0395899_0001461 Ga0395899_0001461_5132_6019 285
187 3300037418 Ga0395900_0002994 Ga0395900_0002994_12266_13153 285
188 3300037418 Ga0395900_0017893 Ga0395900_0017893_2666_3553 285
189 3300037466 Ga0395898_0001093 Ga0395898_0001093_35054_35941 285
190 3300041997 Ga0439431_0061521 Ga0439431_0061521_70_975 285
191 3300044658 Ga0466972_0069050 Ga0466972_0069050_660_1541 285
192 3300050507 nmdc:mga05p37_3553_c1 nmdc:mga05p37_3553_c1_8991_9878 285
193 3300053088 Ga0500644_0053708 Ga0500644_0053708_45_929 285
194 3300053108 Ga0500562_000008 Ga0500562_000008_108056_108937 285
195 3300053156 Ga0500622_0000852 Ga0500622_0000852_19211_20089 285

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04321

RmlD_sub_bind

RmlD substrate binding domain

1

308

0.94

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

3

211

0.93

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

36

163

0.86

PF07993

NAD_binding_4

Male sterility protein

33

194

0.82

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

12

214

0.8

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

4

257

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9676 1 283
3sc6-assembly6.cif.gz_F 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9643 2 281
3sc6-assembly5.cif.gz_E 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9631 2 281
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9609 1 283
1kbz-assembly1.cif.gz_A crystal structure of apo-dtdp-6-deoxy-l-lyxo-4-hexulose reductase (rmld) from salmonella enterica serovar typhimurium 0.9501 1 285
ID Description Score Start End Superfamily
1vl0C02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9815 160 282 3.90.25.10
1vl0C02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9561 160 282 3.90.25.10
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9431 1 285 3.40.50.720
3sc6D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9402 2 213 3.40.50.720
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9399 1 285 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A5D0I356-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9904 64 282 GO:0008831
GO:0019305
AF-A0A0M3CGC3-F1-model_v4 deleted 0.9897 152 279
AF-A0A1M3GF14-F1-model_v4 deleted 0.9886 2 279
AF-A0A7R8ZQM1-F1-model_v4 Methionine adenosyltransferase 2 subunit beta (Methionine adenosyltransferase II beta) 0.9843 27 283 GO:0005829
GO:0006556
GO:0006730
GO:0008830
GO:0008831
GO:0019305
GO:0045226
AF-A0A3N2KJX7-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.983 1 283 GO:0005829
GO:0008831
GO:0019305
GO:0045226

Feature Viewer

pLDDT pTM Quality
96.64 0.93 High
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Predicted Structure (AlphaFold2)

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