F299339

General Info

Members Datasets Scaffolds Average Seq Length
194 132 388 309

Family's Representative Sequence

Representative Sequence 3300053125|Ga0500618_000012|Ga0500618_000012_1853_2881
Length 342
Sequence MPLNKDRRFPSIINIHFRPYYLYLINPNTTIMNTTKQLFPLSKDHTRRKFIFNLSKVAAATAFLTTPFAGSAASFFKVDGDVTVGQIIDKFISQIAGAPFPSTVDTLKSGDRDIKVTGVVTTMFATIEVIRQAIALNANFIIAHEPTFYNHADETAWLANDDVYQYKAALLKEHNIAVWRNHDYIHSLKPDGVGMGVLTQLKWAPYYRPDLGNVLMLPPTTLSSLIDYLKTKLSISKVRYIGNLDQSCQKVLFIPGAAGGKRQISEAGKIKPDVLIVGEIAEWETAEYVRDAQAKGDKLSLIVLGHIASEEPGSEFMLGWLKDKFPAIKSVHIPAKNSLSFI

Samples

Sample ID Description Type Environment
1 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
7 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
8 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
14 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
18 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
52 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
53 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
74 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
75 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
76 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
82 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
83 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
84 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
89 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
90 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
91 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
92 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
93 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
94 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
95 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
96 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
97 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
98 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
99 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
100 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
101 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
102 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
103 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
104 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
105 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
106 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
107 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
113 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
115 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
118 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
119 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
120 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
121 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
122 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
123 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
124 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
125 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
126 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
127 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
128 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
129 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
130 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
131 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
132 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.88
Metatranscriptomes 0
Isolates 4.12

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.86
Nodule 0
Rhizoplane 0.52
Rhizosphere 79.38
Stem 0
Stem Tuber 0
Unclassified 4.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500618_000012 3300053125 Bacteria 185382
2 MBSR1b_contig_8265680 2162886012 Bacteria 1676
3 JGI24739J22299_10020952 3300001989 Bacteria 2332
4 JGI24737J22298_10003532 3300001990 Bacteria 5509
5 JGI24735J21928_10000010 3300002067 Bacteria 237152
6 JGI25162J39368_1000697 3300002737 Bacteria 23315
7 JGI25162J39368_1000919 3300002737 Bacteria 18926
8 JGI25164J39214_1001615 3300002772 Bacteria 4735
9 JGI25165J46597_1007851 3300003214 Bacteria 1731
10 rootH1_10009733 3300003316 Bacteria 10737
11 rootH2_10045630 3300003320 Bacteria 19527
12 rootH2_10074590 3300003320 Bacteria 4801
13 rootH2_10098036 3300003320 Bacteria 4205
14 rootH2_10316427 3300003320 Bacteria 3708
15 rootL2_10118211 3300003322 Bacteria 3486
16 rootH1_10006116 3300003323 Bacteria 44478
17 Ga0065712_10029887 3300005290 Bacteria 1454
18 Ga0065715_10176288 3300005293 Bacteria 1509
19 Ga0070658_10000549 3300005327 Bacteria 32556
20 Ga0070658_10048218 3300005327 Bacteria 3448
21 Ga0070670_100176745 3300005331 Bacteria 1853
22 Ga0070689_100036355 3300005340 Bacteria 3767
23 Ga0070669_100008252 3300005353 Bacteria 7437
24 Ga0070673_100005564 3300005364 Bacteria 8079
25 Ga0070663_100002252 3300005455 Bacteria 10807
26 Ga0070662_100011545 3300005457 Bacteria 5829
27 Ga0068855_100000026 3300005563 Bacteria 175140
28 Ga0068855_100000275 3300005563 Bacteria 63345
29 Ga0068855_100061525 3300005563 Bacteria 4386
30 Ga0068855_100157098 3300005563 Bacteria 2583
31 Ga0068855_100266313 3300005563 Bacteria 1907
32 Ga0068857_100174352 3300005577 Bacteria 1956
33 Ga0068854_100053094 3300005578 Bacteria 2909
34 Ga0068854_100057974 3300005578 Bacteria 2794
35 Ga0068856_100001258 3300005614 Bacteria 26648
36 Ga0068856_100003435 3300005614 Bacteria 16016
37 Ga0068856_100038718 3300005614 Bacteria 4681
38 Ga0068852_100465920 3300005616 Unclassified 1253
39 Ga0068859_100002868 3300005617 Bacteria 17494
40 Ga0068861_100006884 3300005719 Bacteria 7765
41 Ga0068861_100196487 3300005719 Bacteria 1690
42 Ga0068870_10025017 3300005840 Bacteria 2961
43 Ga0075366_10000305 3300006195 Bacteria 22220
44 Ga0075366_10035795 3300006195 Bacteria 2927
45 Ga0075428_100352628 3300006844 Unclassified 1579
46 Ga0075431_100032004 3300006847 Bacteria 5420
47 Ga0097620_100002868 3300006931 Bacteria 17494
48 Ga0105240_10000858 3300009093 Bacteria 54783
49 Ga0105240_10055262 3300009093 Bacteria 4971
50 Ga0105240_10080097 3300009093 Bacteria 4017
51 Ga0105240_10098216 3300009093 Bacteria 3566
52 Ga0105240_10260443 3300009093 Bacteria 2001
53 Ga0111539_10120899 3300009094 Bacteria 3069
54 Ga0105241_10024276 3300009174 Bacteria 4503
55 Ga0105241_10046344 3300009174 Bacteria 3302
56 Ga0105241_10220572 3300009174 Bacteria 1593
57 Ga0105237_10000254 3300009545 Bacteria 75712
58 Ga0105237_10012299 3300009545 Bacteria 9019
59 Ga0105237_10055248 3300009545 Bacteria 3977
60 Ga0105237_10061187 3300009545 Bacteria 3765
61 Ga0105237_10132339 3300009545 Bacteria 2488
62 Ga0105249_10261059 3300009553 Bacteria 1721
63 Ga0105239_10000130 3300010375 Bacteria 105894
64 Ga0105239_10000888 3300010375 Bacteria 42405
65 Ga0105239_10012237 3300010375 Bacteria 9560
66 Ga0105239_10072274 3300010375 Bacteria 3792
67 Ga0105239_10093139 3300010375 Bacteria 3327
68 Ga0105239_10193853 3300010375 Bacteria 2275
69 Ga0105239_10365631 3300010375 Bacteria 1630
70 Ga0157371_10017615 3300013102 Bacteria 5300
71 Ga0157371_10110343 3300013102 Bacteria 1953
72 Ga0157370_10199083 3300013104 Unclassified 1858
73 Ga0157369_10001916 3300013105 Bacteria 25105
74 Ga0157369_10307062 3300013105 Bacteria 1650
75 Ga0157374_10092118 3300013296 Unclassified 2891
76 Ga0157378_10059388 3300013297 Bacteria 3412
77 Ga0163162_10002391 3300013306 Bacteria 17651
78 Ga0163162_10004601 3300013306 Bacteria 13293
79 Ga0163162_10062099 3300013306 Bacteria 3776
80 Ga0163162_10319049 3300013306 Bacteria 1686
81 Ga0157372_10000009 3300013307 Bacteria 302051
82 Ga0157372_10000383 3300013307 Bacteria 49022
83 Ga0157375_10047578 3300013308 Bacteria 4190
84 Ga0163163_10454246 3300014325 Unclassified 1341
85 Ga0157380_10004706 3300014326 Bacteria 9499
86 Ga0163161_10062377 3300017792 Bacteria 2715
87 Ga0207427_100146 3300025231 Bacteria 81506
88 Ga0209437_100096 3300025233 Bacteria 233558
89 Ga0209437_100169 3300025233 Bacteria 142584
90 Ga0209233_1000029 3300025261 Bacteria 641642
91 Ga0209455_1003540 3300025272 Bacteria 5475
92 Ga0209050_1018526 3300025298 Bacteria 2700
93 Ga0207705_10000480 3300025909 Bacteria 34282
94 Ga0207654_10016835 3300025911 Bacteria 3813
95 Ga0207654_10101020 3300025911 Bacteria 1777
96 Ga0207654_10143075 3300025911 Unclassified 1527
97 Ga0207695_10000875 3300025913 Bacteria 54793
98 Ga0207695_10085732 3300025913 Bacteria 3178
99 Ga0207695_10087042 3300025913 Bacteria 3148
100 Ga0207671_10001121 3300025914 Bacteria 32300
101 Ga0207671_10002575 3300025914 Bacteria 19182
102 Ga0207671_10003396 3300025914 Bacteria 15921
103 Ga0207671_10011606 3300025914 Bacteria 7153
104 Ga0207681_10032254 3300025923 Bacteria 3428
105 Ga0207670_10175957 3300025936 Bacteria 1608
106 Ga0207689_10385716 3300025942 Bacteria 1167
107 Ga0207661_10015514 3300025944 Bacteria 5608
108 Ga0207667_10000022 3300025949 Bacteria 369570
109 Ga0207667_10003729 3300025949 Bacteria 18793
110 Ga0207667_10014982 3300025949 Bacteria 8819
111 Ga0207667_10022118 3300025949 Bacteria 7034
112 Ga0207667_10080359 3300025949 Bacteria 3378
113 Ga0207640_10019250 3300025981 Bacteria 4030
114 Ga0207678_10007625 3300026067 Bacteria 9559
115 Ga0207702_10001182 3300026078 Bacteria 26545
116 Ga0207702_10296089 3300026078 Bacteria 1534
117 Ga0207702_10516680 3300026078 Bacteria 1165
118 Ga0207674_10010047 3300026116 Bacteria 10767
119 Ga0207675_100029707 3300026118 Bacteria 5090
120 Ga0268265_10141264 3300028380 Bacteria 2016
121 Ga0307515_10000616 3300028794 Bacteria 83207
122 Ga0307515_10001736 3300028794 Bacteria 48546
123 Ga0307515_10002118 3300028794 Bacteria 43514
124 Ga0265338_10046342 3300028800 Bacteria 3985
125 Ga0316177_1147247 3300030731 Bacteria 11274
126 Ga0316176_1034213 3300030732 Bacteria 13586
127 Ga0316183_1105030 3300030742 Bacteria 10903
128 Ga0316181_1069292 3300030744 Bacteria 7670
129 Ga0307408_100043747 3300031548 Unclassified 3188
130 Ga0307406_10040453 3300031901 Bacteria 2899
131 Ga0307407_10058425 3300031903 Unclassified 2242
132 Ga0307412_10011841 3300031911 Bacteria 5064
133 Ga0307409_100030134 3300031995 Unclassified 3894
134 Ga0307507_10000036 3300033179 Bacteria 187512
135 Ga0373941_0033930 3300035115 Bacteria 1536
136 Ga0395899_0000450 3300037312 Bacteria 47044
137 Ga0395900_0000994 3300037418 Bacteria 36862
138 Ga0395900_0028099 3300037418 Bacteria 5760
139 Ga0395900_0342590 3300037418 Bacteria 1470
140 Ga0395905_0000380 3300037471 Bacteria 63103
141 Ga0395901_0002155 3300038443 Bacteria 20107
142 Ga0466969_0041477 3300044656 Bacteria 2302
143 Ga0466966_0014922 3300044684 Bacteria 5141
144 Ga0495638_0000036 3300046460 Bacteria 275731
145 Ga0495651_0029108 3300046462 Bacteria 4308
146 Ga0495585_0001566 3300046492 Bacteria 17761
147 Ga0495585_0004198 3300046492 Bacteria 9408
148 Ga0495606_0000035 3300046507 Bacteria 243820
149 Ga0495606_0027140 3300046507 Bacteria 4066
150 Ga0495616_0044871 3300046513 Bacteria 2240
151 Ga0495648_0011485 3300046524 Bacteria 6664
152 Ga0495652_0084938 3300046529 Bacteria 2602
153 Ga0495609_0002548 3300046538 Bacteria 11149
154 Ga0495633_0000027 3300046558 Bacteria 204613
155 Ga0495668_0000112 3300046616 Bacteria 128501
156 Ga0495625_0000576 3300046660 Bacteria 53723
157 Ga0495625_0001065 3300046660 Bacteria 35829
158 Ga0495625_0145746 3300046660 Bacteria 1594
159 Ga0495660_0003614 3300046810 Bacteria 9530
160 Ga0495687_000264 3300047443 Bacteria 70552
161 Ga0495686_0000113 3300047472 Bacteria 168307
162 Ga0495686_0018301 3300047472 Bacteria 4705
163 Ga0495686_0045224 3300047472 Bacteria 2785
164 Ga0495686_0048108 3300047472 Bacteria 2690
165 Ga0495614_0017078 3300048089 Bacteria 3154
166 Ga0495678_030463 3300049459 Bacteria 2257
167 Ga0495682_0003435 3300049460 Bacteria 7038
168 Ga0501031_0238694 3300049568 Bacteria 1182
169 Ga0501036_0025934 3300049572 Bacteria 4946
170 Ga0501037_0014657 3300049573 Bacteria 5768
171 Ga0501043_0014665 3300049579 Bacteria 6135
172 Ga0501047_0007781 3300049581 Bacteria 10091
173 Ga0501266_002381 3300049763 Bacteria 2374
174 Ga0501035_0030644 3300049822 Bacteria 4903
175 Ga0501044_0018019 3300049823 Bacteria 7572
176 nmdc:mga0k408_14349_c1 3300050493 Bacteria 4363
177 nmdc:mga0k408_74_c2 3300050493 Bacteria 20737
178 nmdc:mga06r32_20473_c1 3300050510 Bacteria 6092
179 Ga0500635_0007141 3300053080 Bacteria 3018
180 Ga0500644_0000097 3300053088 Bacteria 55269
181 Ga0500608_059637 3300053122 Bacteria 1825
182 Ga0500642_0045256 3300053130 Bacteria 1920
183 Ga0500559_0200110 3300053136 Bacteria 942
184 Ga0500616_0011762 3300053153 Bacteria 5150
185 Ga0500633_0037261 3300053160 Bacteria 1613
186 Ga0500634_0017324 3300053161 Bacteria 3857
187 2599478820 2599185184 Bacteria 6430550
188 2842909429 2842903701 Bacteria 6986368
189 2884795015 2884791551 Bacteria 8511252
190 2919438469 2919437846 Bacteria 6199444
191 2928082955 2928078545 Bacteria 6534839
192 2928149974 2928147474 Bacteria 6512076
193 2929241828 2929239360 Bacteria 7745570
194 2932086792 2932082852 Bacteria 6563563
195 Ga0500618_000012
196 MBSR1b_contig_8265680
197 JGI24739J22299_10020952
198 JGI24737J22298_10003532
199 JGI24735J21928_10000010
200 JGI25162J39368_1000697
201 JGI25162J39368_1000919
202 JGI25164J39214_1001615
203 JGI25165J46597_1007851
204 rootH1_10009733
205 rootH2_10045630
206 rootH2_10074590
207 rootH2_10098036
208 rootH2_10316427
209 rootL2_10118211
210 rootH1_10006116
211 Ga0065712_10029887
212 Ga0065715_10176288
213 Ga0070658_10000549
214 Ga0070658_10048218
215 Ga0070670_100176745
216 Ga0070689_100036355
217 Ga0070669_100008252
218 Ga0070673_100005564
219 Ga0070663_100002252
220 Ga0070662_100011545
221 Ga0068855_100000026
222 Ga0068855_100000275
223 Ga0068855_100061525
224 Ga0068855_100157098
225 Ga0068855_100266313
226 Ga0068857_100174352
227 Ga0068854_100053094
228 Ga0068854_100057974
229 Ga0068856_100001258
230 Ga0068856_100003435
231 Ga0068856_100038718
232 Ga0068852_100465920
233 Ga0068859_100002868
234 Ga0068861_100006884
235 Ga0068861_100196487
236 Ga0068870_10025017
237 Ga0075366_10000305
238 Ga0075366_10035795
239 Ga0075428_100352628
240 Ga0075431_100032004
241 Ga0097620_100002868
242 Ga0105240_10000858
243 Ga0105240_10055262
244 Ga0105240_10080097
245 Ga0105240_10098216
246 Ga0105240_10260443
247 Ga0111539_10120899
248 Ga0105241_10024276
249 Ga0105241_10046344
250 Ga0105241_10220572
251 Ga0105237_10000254
252 Ga0105237_10012299
253 Ga0105237_10055248
254 Ga0105237_10061187
255 Ga0105237_10132339
256 Ga0105249_10261059
257 Ga0105239_10000130
258 Ga0105239_10000888
259 Ga0105239_10012237
260 Ga0105239_10072274
261 Ga0105239_10093139
262 Ga0105239_10193853
263 Ga0105239_10365631
264 Ga0157371_10017615
265 Ga0157371_10110343
266 Ga0157370_10199083
267 Ga0157369_10001916
268 Ga0157369_10307062
269 Ga0157374_10092118
270 Ga0157378_10059388
271 Ga0163162_10002391
272 Ga0163162_10004601
273 Ga0163162_10062099
274 Ga0163162_10319049
275 Ga0157372_10000009
276 Ga0157372_10000383
277 Ga0157375_10047578
278 Ga0163163_10454246
279 Ga0157380_10004706
280 Ga0163161_10062377
281 Ga0207427_100146
282 Ga0209437_100096
283 Ga0209437_100169
284 Ga0209233_1000029
285 Ga0209455_1003540
286 Ga0209050_1018526
287 Ga0207705_10000480
288 Ga0207654_10016835
289 Ga0207654_10101020
290 Ga0207654_10143075
291 Ga0207695_10000875
292 Ga0207695_10085732
293 Ga0207695_10087042
294 Ga0207671_10001121
295 Ga0207671_10002575
296 Ga0207671_10003396
297 Ga0207671_10011606
298 Ga0207681_10032254
299 Ga0207670_10175957
300 Ga0207689_10385716
301 Ga0207661_10015514
302 Ga0207667_10000022
303 Ga0207667_10003729
304 Ga0207667_10014982
305 Ga0207667_10022118
306 Ga0207667_10080359
307 Ga0207640_10019250
308 Ga0207678_10007625
309 Ga0207702_10001182
310 Ga0207702_10296089
311 Ga0207702_10516680
312 Ga0207674_10010047
313 Ga0207675_100029707
314 Ga0268265_10141264
315 Ga0307515_10000616
316 Ga0307515_10001736
317 Ga0307515_10002118
318 Ga0265338_10046342
319 Ga0316177_1147247
320 Ga0316176_1034213
321 Ga0316183_1105030
322 Ga0316181_1069292
323 Ga0307408_100043747
324 Ga0307406_10040453
325 Ga0307407_10058425
326 Ga0307412_10011841
327 Ga0307409_100030134
328 Ga0307507_10000036
329 Ga0373941_0033930
330 Ga0395899_0000450
331 Ga0395900_0000994
332 Ga0395900_0028099
333 Ga0395900_0342590
334 Ga0395905_0000380
335 Ga0395901_0002155
336 Ga0466969_0041477
337 Ga0466966_0014922
338 Ga0495638_0000036
339 Ga0495651_0029108
340 Ga0495585_0001566
341 Ga0495585_0004198
342 Ga0495606_0000035
343 Ga0495606_0027140
344 Ga0495616_0044871
345 Ga0495648_0011485
346 Ga0495652_0084938
347 Ga0495609_0002548
348 Ga0495633_0000027
349 Ga0495668_0000112
350 Ga0495625_0000576
351 Ga0495625_0001065
352 Ga0495625_0145746
353 Ga0495660_0003614
354 Ga0495687_000264
355 Ga0495686_0000113
356 Ga0495686_0018301
357 Ga0495686_0045224
358 Ga0495686_0048108
359 Ga0495614_0017078
360 Ga0495678_030463
361 Ga0495682_0003435
362 Ga0501031_0238694
363 Ga0501036_0025934
364 Ga0501037_0014657
365 Ga0501043_0014665
366 Ga0501047_0007781
367 Ga0501266_002381
368 Ga0501035_0030644
369 Ga0501044_0018019
370 nmdc:mga0k408_14349_c1
371 nmdc:mga0k408_74_c2
372 nmdc:mga06r32_20473_c1
373 Ga0500635_0007141
374 Ga0500644_0000097
375 Ga0500608_059637
376 Ga0500642_0045256
377 Ga0500559_0200110
378 Ga0500616_0011762
379 Ga0500633_0037261
380 Ga0500634_0017324
381 2599478820
382 2842909429
383 2884795015
384 2919438469
385 2928082955
386 2928149974
387 2929241828
388 2932086792

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01784

DUF34_NIF3

Duf34/NIF3 (NGG1p interacting factor 3)

102

328

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
1nmo-assembly1.cif.gz_A structural genomics, protein ybgi, unknown function 0.8263 65 318
2nyd-assembly1.cif.gz_A-3 crystal structure of staphylococcus aureus hypothetical protein sa1388 0.813 61 321
1nmo-assembly1.cif.gz_A structural genomics, protein ybgi, unknown function 0.8052 65 318
2nyd-assembly1.cif.gz_B-3 crystal structure of staphylococcus aureus hypothetical protein sa1388 0.8014 59 321
3lnl-assembly1.cif.gz_A crystal structure of staphylococcus aureus protein sa1388 0.7997 63 321
ID Description Score Start End Superfamily
af_P9WFM1_1_122_3.40.1390.30 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;NIF3 (NGG1p interacting factor 3)-like 0.8148 61 182 3.40.1390.30
af_Q2FY14_1_121_3.40.1390.30 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;NIF3 (NGG1p interacting factor 3)-like 0.8009 63 182 3.40.1390.30
af_Q58337_1_120_3.40.1390.30 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;NIF3 (NGG1p interacting factor 3)-like 0.7984 63 179 3.40.1390.30
2fywC02 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;NIF3 (NGG1p interacting factor 3)-like 0.7856 193 284 3.40.1390.30
af_P9WFM1_1_122_3.40.1390.30 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;NIF3 (NGG1p interacting factor 3)-like 0.7787 61 182 3.40.1390.30
ID Description Score Start End GO Terms
AF-A0A7Y6ZH69-F1-model_v4 Nif3-like dinuclear metal center hexameric protein 0.9794 68 321 GO:0005737
AF-A0A1F3D2C3-F1-model_v4 Uncharacterized protein 0.9764 103 188
AF-A0A7Y6ZH69-F1-model_v4 Nif3-like dinuclear metal center hexameric protein 0.9756 68 321 GO:0005737
AF-A0A7V8D224-F1-model_v4 NGG1-interacting factor 3 0.9697 63 321 GO:0005737
AF-A0A1F3D2C3-F1-model_v4 Uncharacterized protein 0.9654 103 188

Map