F297724
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 193 | 140 | 173 | 273 |
Family's Representative Sequence
| Representative Sequence | 3300048925|Ga0496122_0007090|Ga0496122_0007090_9263_10261 |
| Length | 319 |
| Sequence | LETHRRDDRYPFQSINPFINFKHKREAKWPSCLSIFNNELLNKVNYVISYLYLIDFFHKKAKIMEYQARYITEDIKMFDQHMLVWFLSGETKIVQADATYLFGKGDIFLIPRNQLATIINYPKDGEPHKTVVMHLSLEKLKNFYAGKTIDPQRQNSSKIFCFNNHPLLESCLASLIPYFEMKDIPEDIAAIKITEAISILRTLDKRIDQLLANFEEPGKINLVDYMEKNFMFNLPLEKFGYLTGRSLTTFKRDFKKAFTMTPQRWLTYKRLELAYYQLTEQKKKPLEVCYEVGFENLSHFSFAFKKQFGFAPSLLKSIS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 2 | 2585428115 | Chryseobacterium sp. YR561 | Isolate | Rhizosphere |
| 3 | 2721755487 | Sphingobacterium sp. B29 | Isolate | Rhizosphere |
| 4 | 2738541279 | Flavobacterium sp. GV069 | Isolate | Unclassified |
| 5 | 2738541285 | Flavobacterium sp. GV030 | Isolate | Unclassified |
| 6 | 2738543007 | Flavobacterium sp. GV063 | Isolate | Unclassified |
| 7 | 2751185877 | Chryseobacterium artocarpi UTM-3 | Isolate | Rhizosphere |
| 8 | 2772190705 | Chryseobacterium contaminans C-26 | Isolate | Rhizosphere |
| 9 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 10 | 2818991460 | Chitinophaga polysaccharea 1209 | Isolate | Unclassified |
| 11 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 12 | 2857618242 | Flavobacterium sp. R-74482 | Isolate | Unclassified |
| 13 | 2883068021 | Chitinophaga rhizosphaerae T16R-86 | Isolate | Rhizosphere |
| 14 | 2884791551 | Chitinophaga oryzae 1310 | Isolate | Unclassified |
| 15 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 16 | 2919186247 | Pedobacter africanus 2697 | Isolate | Rhizosphere |
| 17 | 2919683626 | Flavobacterium piscis 4129 | Isolate | Unclassified |
| 18 | 2939664404 | Pedobacter africanus 2990 | Isolate | Rhizosphere |
| 19 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 20 | 3300002772 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS | Metagenome | Endosphere |
| 21 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 22 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 23 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 24 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 25 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 26 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 27 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 28 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 30 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 31 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 33 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 35 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 36 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 37 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 38 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 39 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 40 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 41 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 42 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 43 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 44 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 45 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 46 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 47 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 48 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 49 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 50 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 51 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 52 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 53 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 54 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 55 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 57 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 58 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 60 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 61 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 62 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 63 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 64 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 65 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 66 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 67 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 68 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 69 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 70 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 71 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 72 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 73 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 74 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 75 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 76 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 77 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 78 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 79 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 80 | 3300015682 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 | Metagenome | Rhizosphere |
| 81 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 82 | 3300025231 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 83 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 84 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 85 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 86 | 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300025900 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 98 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 99 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 100 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 101 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 102 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 103 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 104 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 105 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 106 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 107 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 108 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 109 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 110 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 111 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 112 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 113 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 114 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 115 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 116 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 117 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 118 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 119 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 120 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 121 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 122 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 123 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 124 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 125 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 126 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 127 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 129 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 130 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 131 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 132 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 133 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 134 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 135 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 136 | 3300049763 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control | Metagenome | Rhizosphere |
| 137 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 138 | 3300053134 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere | Metagenome | Endosphere |
| 139 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 140 | 3300053726 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere | Metagenome | Endosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 91.19 |
| Metatranscriptomes | 0 |
| Isolates | 8.81 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 7.77 |
| Nodule | 0 |
| Rhizoplane | 0.52 |
| Rhizosphere | 77.72 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 13.99 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | SwRhRL2b_contig_1663050 | 2162886007 | Bacteria | 482194 |
| 2 | SwRhRL2b_contig_2165460 | 2162886007 | Bacteria | 5944 |
| 3 | SwRhRL2b_contig_3214703 | 2162886007 | Bacteria | 2041 |
| 4 | JGI25162J39368_1000150 | 3300002737 | Bacteria | 75945 |
| 5 | JGI25164J39214_1001296 | 3300002772 | Bacteria | 6350 |
| 6 | JGI25165J46597_1000754 | 3300003214 | Bacteria | 24877 |
| 7 | rootL2_10147605 | 3300003322 | Bacteria | 2282 |
| 8 | rootH1_10028688 | 3300003323 | Bacteria | 5238 |
| 9 | rootH1_10073751 | 3300003323 | Bacteria | 2276 |
| 10 | rootH1_10118668 | 3300003323 | Bacteria | 4563 |
| 11 | Ga0055531_10000239 | 3300003794 | Bacteria | 60012 |
| 12 | Ga0065165_1007019 | 3300005262 | Bacteria | 5678 |
| 13 | Ga0065714_10079491 | 3300005288 | Bacteria | 2511 |
| 14 | Ga0065704_10002345 | 3300005289 | Bacteria | 11247 |
| 15 | Ga0065704_10070140 | 3300005289 | Bacteria | 482257 |
| 16 | Ga0065704_10083730 | 3300005289 | Bacteria | 3426 |
| 17 | Ga0065704_10094339 | 3300005289 | Bacteria | 2548 |
| 18 | Ga0070676_10002271 | 3300005328 | Bacteria | 9811 |
| 19 | Ga0070670_100036997 | 3300005331 | Bacteria | 4199 |
| 20 | Ga0070670_100190937 | 3300005331 | Unclassified | 1779 |
| 21 | Ga0068869_100027311 | 3300005334 | Bacteria | 3978 |
| 22 | Ga0068869_100088753 | 3300005334 | Unclassified | 2321 |
| 23 | Ga0070666_10000065 | 3300005335 | Bacteria | 79454 |
| 24 | Ga0070666_10021078 | 3300005335 | Bacteria | 4221 |
| 25 | Ga0068868_100348120 | 3300005338 | Unclassified | 1268 |
| 26 | Ga0070661_100199869 | 3300005344 | Bacteria | 1527 |
| 27 | Ga0070668_100157967 | 3300005347 | Bacteria | 1838 |
| 28 | Ga0070671_100023192 | 3300005355 | Bacteria | 5075 |
| 29 | Ga0070673_100034228 | 3300005364 | Bacteria | 3842 |
| 30 | Ga0070673_100159505 | 3300005364 | Bacteria | 1917 |
| 31 | Ga0070667_100070519 | 3300005367 | Bacteria | 2975 |
| 32 | Ga0070667_100184261 | 3300005367 | Bacteria | 1847 |
| 33 | Ga0070667_100399265 | 3300005367 | Bacteria | 1251 |
| 34 | Ga0070678_100029684 | 3300005456 | Bacteria | 3748 |
| 35 | Ga0070662_100045249 | 3300005457 | Bacteria | 3156 |
| 36 | Ga0068853_100044943 | 3300005539 | Bacteria | 3782 |
| 37 | Ga0070672_100378448 | 3300005543 | Bacteria | 1210 |
| 38 | Ga0070686_100073816 | 3300005544 | Bacteria | 2240 |
| 39 | Ga0070665_100000010 | 3300005548 | Bacteria | 529545 |
| 40 | Ga0070665_100173083 | 3300005548 | Bacteria | 2160 |
| 41 | Ga0068855_100009561 | 3300005563 | Bacteria | 11704 |
| 42 | Ga0068857_100299479 | 3300005577 | Bacteria | 1482 |
| 43 | Ga0068854_100035374 | 3300005578 | Bacteria | 3495 |
| 44 | Ga0068856_100929739 | 3300005614 | Bacteria | 888 |
| 45 | Ga0068852_100008070 | 3300005616 | Bacteria | 7724 |
| 46 | Ga0068852_100424905 | 3300005616 | Bacteria | 1311 |
| 47 | Ga0068859_100000006 | 3300005617 | Bacteria | 421509 |
| 48 | Ga0068859_100004564 | 3300005617 | Bacteria | 14126 |
| 49 | Ga0068864_100017835 | 3300005618 | Bacteria | 5920 |
| 50 | Ga0068861_100285825 | 3300005719 | Bacteria | 1422 |
| 51 | Ga0068851_10038707 | 3300005834 | Bacteria | 2393 |
| 52 | Ga0068863_100014118 | 3300005841 | Bacteria | 7694 |
| 53 | Ga0068858_100022618 | 3300005842 | Bacteria | 5863 |
| 54 | Ga0097621_100011413 | 3300006237 | Bacteria | 6541 |
| 55 | Ga0097621_100014321 | 3300006237 | Bacteria | 5932 |
| 56 | Ga0068871_100020512 | 3300006358 | Bacteria | 5064 |
| 57 | Ga0068871_100596141 | 3300006358 | Bacteria | 1004 |
| 58 | Ga0068871_100648678 | 3300006358 | Bacteria | 964 |
| 59 | Ga0068865_100001734 | 3300006881 | Bacteria | 12811 |
| 60 | Ga0097620_100000006 | 3300006931 | Bacteria | 421509 |
| 61 | Ga0097620_100004564 | 3300006931 | Bacteria | 14126 |
| 62 | Ga0105240_10057449 | 3300009093 | Bacteria | 4861 |
| 63 | Ga0105247_10002825 | 3300009101 | Bacteria | 11587 |
| 64 | Ga0105243_10000079 | 3300009148 | Bacteria | 109857 |
| 65 | Ga0105241_10000243 | 3300009174 | Bacteria | 41390 |
| 66 | Ga0105241_10080404 | 3300009174 | Bacteria | 2551 |
| 67 | Ga0105241_10200011 | 3300009174 | Bacteria | 1668 |
| 68 | Ga0105242_10020978 | 3300009176 | Bacteria | 5125 |
| 69 | Ga0105237_10005786 | 3300009545 | Bacteria | 13879 |
| 70 | Ga0105237_10094636 | 3300009545 | Bacteria | 2977 |
| 71 | Ga0105237_10204469 | 3300009545 | Bacteria | 1975 |
| 72 | Ga0105249_10358737 | 3300009553 | Bacteria | 1478 |
| 73 | Ga0105239_10018537 | 3300010375 | Bacteria | 7687 |
| 74 | Ga0105246_10015306 | 3300011119 | Bacteria | 4842 |
| 75 | Ga0157373_10010273 | 3300013100 | Bacteria | 6897 |
| 76 | Ga0157371_10000140 | 3300013102 | Bacteria | 104669 |
| 77 | Ga0157370_10000977 | 3300013104 | Bacteria | 36207 |
| 78 | Ga0157370_10115339 | 3300013104 | Bacteria | 2509 |
| 79 | Ga0157374_10007898 | 3300013296 | Bacteria | 9082 |
| 80 | Ga0157374_10127437 | 3300013296 | Unclassified | 2461 |
| 81 | Ga0157374_10227915 | 3300013296 | Unclassified | 1830 |
| 82 | Ga0157378_10038559 | 3300013297 | Bacteria | 4235 |
| 83 | Ga0157378_10151061 | 3300013297 | Bacteria | 2164 |
| 84 | Ga0163162_10000412 | 3300013306 | Bacteria | 39272 |
| 85 | Ga0163162_10052100 | 3300013306 | Bacteria | 4109 |
| 86 | Ga0163162_10206050 | 3300013306 | Bacteria | 2096 |
| 87 | Ga0163162_10372588 | 3300013306 | Bacteria | 1561 |
| 88 | Ga0163162_10793065 | 3300013306 | Bacteria | 1065 |
| 89 | Ga0157375_10003634 | 3300013308 | Bacteria | 13380 |
| 90 | Ga0157375_10063267 | 3300013308 | Bacteria | 3680 |
| 91 | Ga0157375_10072643 | 3300013308 | Bacteria | 3458 |
| 92 | Ga0163163_10147207 | 3300014325 | Bacteria | 2399 |
| 93 | Ga0182008_10000755 | 3300014497 | Bacteria | 22725 |
| 94 | Ga0157379_10259548 | 3300014968 | Bacteria | 1578 |
| 95 | Ga0157376_10011952 | 3300014969 | Bacteria | 6422 |
| 96 | Ga0157376_10503671 | 3300014969 | Bacteria | 1191 |
| 97 | Ga0157376_10648560 | 3300014969 | Bacteria | 1056 |
| 98 | Ga0182006_1000016 | 3300015261 | Bacteria | 303558 |
| 99 | Ga0183373_1001 | 3300015682 | Bacteria | 1410374 |
| 100 | Ga0163161_10001157 | 3300017792 | Bacteria | 19859 |
| 101 | Ga0163161_10062898 | 3300017792 | Bacteria | 2704 |
| 102 | Ga0207427_100083 | 3300025231 | Bacteria | 142745 |
| 103 | Ga0209437_100021 | 3300025233 | Bacteria | 646400 |
| 104 | Ga0209233_1000035 | 3300025261 | Bacteria | 568478 |
| 105 | Ga0209257_1000511 | 3300025304 | Bacteria | 67499 |
| 106 | Ga0207656_10057579 | 3300025321 | Bacteria | 1696 |
| 107 | Ga0207655_1000381 | 3300025728 | Bacteria | 61849 |
| 108 | Ga0207642_10052112 | 3300025899 | Bacteria | 1855 |
| 109 | Ga0207642_10149193 | 3300025899 | Unclassified | 1242 |
| 110 | Ga0207710_10018741 | 3300025900 | Bacteria | 2946 |
| 111 | Ga0207680_10000028 | 3300025903 | Bacteria | 78965 |
| 112 | Ga0207645_10000184 | 3300025907 | Bacteria | 50110 |
| 113 | Ga0207643_10195919 | 3300025908 | Bacteria | 1228 |
| 114 | Ga0207654_10001989 | 3300025911 | Bacteria | 10511 |
| 115 | Ga0207654_10409580 | 3300025911 | Unclassified | 944 |
| 116 | Ga0207695_10001273 | 3300025913 | Bacteria | 42881 |
| 117 | Ga0207695_10046578 | 3300025913 | Bacteria | 4596 |
| 118 | Ga0207671_10021179 | 3300025914 | Bacteria | 4938 |
| 119 | Ga0207671_10041023 | 3300025914 | Bacteria | 3425 |
| 120 | Ga0207671_10221703 | 3300025914 | Bacteria | 1482 |
| 121 | Ga0207650_10060386 | 3300025925 | Bacteria | 2829 |
| 122 | Ga0207644_10185281 | 3300025931 | Bacteria | 1634 |
| 123 | Ga0207706_10012130 | 3300025933 | Bacteria | 7850 |
| 124 | Ga0207709_10000006 | 3300025935 | Bacteria | 800946 |
| 125 | Ga0207704_10000176 | 3300025938 | Bacteria | 33711 |
| 126 | Ga0207691_10106008 | 3300025940 | Bacteria | 2504 |
| 127 | Ga0207689_10002127 | 3300025942 | Bacteria | 18634 |
| 128 | Ga0207689_10553569 | 3300025942 | Bacteria | 966 |
| 129 | Ga0207667_10027333 | 3300025949 | Bacteria | 6211 |
| 130 | Ga0207651_10043453 | 3300025960 | Bacteria | 3000 |
| 131 | Ga0207651_10179353 | 3300025960 | Bacteria | 1679 |
| 132 | Ga0207677_10219728 | 3300026023 | Bacteria | 1523 |
| 133 | Ga0207677_10370799 | 3300026023 | Bacteria | 1205 |
| 134 | Ga0207703_10001345 | 3300026035 | Bacteria | 22504 |
| 135 | Ga0207639_10017886 | 3300026041 | Bacteria | 5029 |
| 136 | Ga0207641_10000122 | 3300026088 | Bacteria | 113915 |
| 137 | Ga0207676_10013585 | 3300026095 | Bacteria | 5844 |
| 138 | Ga0207675_100362232 | 3300026118 | Bacteria | 1423 |
| 139 | Ga0207683_10170301 | 3300026121 | Bacteria | 1972 |
| 140 | Ga0207683_10196065 | 3300026121 | Bacteria | 1835 |
| 141 | Ga0207698_10055508 | 3300026142 | Bacteria | 3053 |
| 142 | Ga0268266_10000094 | 3300028379 | Bacteria | 190917 |
| 143 | Ga0268266_10508139 | 3300028379 | Bacteria | 1151 |
| 144 | Ga0268264_10004952 | 3300028381 | Bacteria | 11276 |
| 145 | Ga0307517_10007248 | 3300028786 | Bacteria | 16231 |
| 146 | Ga0307515_10000071 | 3300028794 | Bacteria | 238152 |
| 147 | Ga0265327_10000026 | 3300031251 | Bacteria | 379288 |
| 148 | Ga0307516_10030599 | 3300031730 | Bacteria | 5431 |
| 149 | Ga0307413_10000905 | 3300031824 | Bacteria | 10500 |
| 150 | Ga0307414_10101096 | 3300032004 | Bacteria | 2170 |
| 151 | Ga0307414_10317104 | 3300032004 | Unclassified | 1325 |
| 152 | Ga0307414_10592113 | 3300032004 | Bacteria | 993 |
| 153 | Ga0307411_10000001 | 3300032005 | Bacteria | 931810 |
| 154 | Ga0307510_10005596 | 3300033180 | Bacteria | 14978 |
| 155 | Ga0466972_0000199 | 3300044658 | Bacteria | 43983 |
| 156 | Ga0453683_0028033 | 3300044673 | Bacteria | 3567 |
| 157 | Ga0466965_0089945 | 3300044683 | Bacteria | 1561 |
| 158 | Ga0466959_0106749 | 3300045049 | Bacteria | 2002 |
| 159 | Ga0495643_0086917 | 3300046522 | Bacteria | 1619 |
| 160 | Ga0496101_0070069 | 3300048904 | Bacteria | 2567 |
| 161 | Ga0496116_0004434 | 3300048919 | Bacteria | 13399 |
| 162 | Ga0496117_0012230 | 3300048920 | Bacteria | 7589 |
| 163 | Ga0496121_0000008 | 3300048924 | Bacteria | 843593 |
| 164 | Ga0496121_0052017 | 3300048924 | Bacteria | 3444 |
| 165 | Ga0496122_0007090 | 3300048925 | Bacteria | 12591 |
| 166 | Ga0496123_0073878 | 3300048926 | Bacteria | 2113 |
| 167 | Ga0496125_0230441 | 3300048928 | Bacteria | 1185 |
| 168 | Ga0496126_0008148 | 3300048929 | Bacteria | 11346 |
| 169 | Ga0501266_000005 | 3300049763 | Bacteria | 346750 |
| 170 | Ga0500641_0106080 | 3300053096 | Bacteria | 1207 |
| 171 | Ga0500658_0000019 | 3300053134 | Bacteria | 141013 |
| 172 | Ga0500622_0000082 | 3300053156 | Bacteria | 101502 |
| 173 | Ga0500584_012370 | 3300053726 | Bacteria | 3877 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300048924 | Ga0496121_0052017 | Ga0496121_0052017_1394_2206 | 255 |
| 2 | iso_pu_bacteria | 2751185877 | 2753672470 | 263 |
| 3 | iso_pu_bacteria | 2772190705 | 2772607587 | 263 |
| 4 | iso_pu_bacteria | 2818991442 | 2819576864 | 263 |
| 5 | iso_pu_bacteria | 2821136567 | 2821142942 | 263 |
| 6 | iso_pu_bacteria | 2884791551 | 2884793662 | 263 |
| 7 | iso_pu_bacteria | 2904467357 | 2904470671 | 263 |
| 8 | iso_pu_bacteria | 2585428115 | 2587944319 | 265 |
| 9 | iso_pu_bacteria | 2721755487 | 2722729104 | 265 |
| 10 | iso_pu_bacteria | 2738541279 | 2738736532 | 265 |
| 11 | iso_pu_bacteria | 2738541285 | 2738766829 | 265 |
| 12 | iso_pu_bacteria | 2738543007 | 2739218114 | 265 |
| 13 | iso_pu_bacteria | 2818991460 | 2819677069 | 265 |
| 14 | iso_pu_bacteria | 2857618242 | 2857618342 | 265 |
| 15 | iso_pu_bacteria | 2883068021 | 2883072344 | 265 |
| 16 | iso_pu_bacteria | 2919186247 | 2919190379 | 265 |
| 17 | iso_pu_bacteria | 2919683626 | 2919686623 | 265 |
| 18 | iso_pu_bacteria | 2939664404 | 2939668660 | 265 |
| 19 | 3300003794 | Ga0055531_10000239 | Ga0055531_1000023937 | 267 |
| 20 | 3300005262 | Ga0065165_1007019 | Ga0065165_10070192 | 267 |
| 21 | 3300025304 | Ga0209257_1000511 | Ga0209257_100051130 | 267 |
| 22 | 3300044658 | Ga0466972_0000199 | Ga0466972_0000199_42187_42990 | 267 |
| 23 | 3300044673 | Ga0453683_0028033 | Ga0453683_0028033_1653_2456 | 267 |
| 24 | 3300048924 | Ga0496121_0000008 | Ga0496121_0000008_307895_308698 | 267 |
| 25 | 3300002737 | JGI25162J39368_1000150 | JGI25162J39368_100015074 | 268 |
| 26 | 3300002772 | JGI25164J39214_1001296 | JGI25164J39214_10012965 | 268 |
| 27 | 3300003214 | JGI25165J46597_1000754 | JGI25165J46597_100075423 | 268 |
| 28 | 3300025231 | Ga0207427_100083 | Ga0207427_10008313 | 268 |
| 29 | 3300025233 | Ga0209437_100021 | Ga0209437_100021272 | 268 |
| 30 | 3300025261 | Ga0209233_1000035 | Ga0209233_1000035366 | 268 |
| 31 | 3300053156 | Ga0500622_0000082 | Ga0500622_0000082_92708_93514 | 268 |
| 32 | 2162886007 | SwRhRL2b_contig_2165460 | SwRhRL2b_0607.00007880 | 269 |
| 33 | 2162886007 | SwRhRL2b_contig_3214703 | SwRhRL2b_0404.00003470 | 269 |
| 34 | 3300003322 | rootL2_10147605 | rootL2_101476051 | 269 |
| 35 | 3300003323 | rootH1_10028688 | rootH1_100286885 | 269 |
| 36 | 3300003323 | rootH1_10118668 | rootH1_101186683 | 269 |
| 37 | 3300003794 | Ga0055531_10000239 | Ga0055531_1000023935 | 269 |
| 38 | 3300005288 | Ga0065714_10079491 | Ga0065714_100794913 | 269 |
| 39 | 3300005289 | Ga0065704_10002345 | Ga0065704_100023459 | 269 |
| 40 | 3300005289 | Ga0065704_10070140 | Ga0065704_10070140413 | 269 |
| 41 | 3300005289 | Ga0065704_10083730 | Ga0065704_100837302 | 269 |
| 42 | 3300005289 | Ga0065704_10094339 | Ga0065704_100943393 | 269 |
| 43 | 3300005328 | Ga0070676_10002271 | Ga0070676_100022712 | 269 |
| 44 | 3300005331 | Ga0070670_100036997 | Ga0070670_1000369974 | 269 |
| 45 | 3300005331 | Ga0070670_100190937 | Ga0070670_1001909372 | 269 |
| 46 | 3300005334 | Ga0068869_100088753 | Ga0068869_1000887531 | 269 |
| 47 | 3300005335 | Ga0070666_10021078 | Ga0070666_100210782 | 269 |
| 48 | 3300005338 | Ga0068868_100348120 | Ga0068868_1003481201 | 269 |
| 49 | 3300005344 | Ga0070661_100199869 | Ga0070661_1001998692 | 269 |
| 50 | 3300005347 | Ga0070668_100157967 | Ga0070668_1001579672 | 269 |
| 51 | 3300005364 | Ga0070673_100034228 | Ga0070673_1000342284 | 269 |
| 52 | 3300005364 | Ga0070673_100159505 | Ga0070673_1001595051 | 269 |
| 53 | 3300005367 | Ga0070667_100070519 | Ga0070667_1000705192 | 269 |
| 54 | 3300005367 | Ga0070667_100184261 | Ga0070667_1001842612 | 269 |
| 55 | 3300005367 | Ga0070667_100399265 | Ga0070667_1003992652 | 269 |
| 56 | 3300005456 | Ga0070678_100029684 | Ga0070678_1000296842 | 269 |
| 57 | 3300005457 | Ga0070662_100045249 | Ga0070662_1000452491 | 269 |
| 58 | 3300005544 | Ga0070686_100073816 | Ga0070686_1000738161 | 269 |
| 59 | 3300005577 | Ga0068857_100299479 | Ga0068857_1002994791 | 269 |
| 60 | 3300005578 | Ga0068854_100035374 | Ga0068854_1000353741 | 269 |
| 61 | 3300005614 | Ga0068856_100929739 | Ga0068856_1009297391 | 269 |
| 62 | 3300005616 | Ga0068852_100008070 | Ga0068852_1000080701 | 269 |
| 63 | 3300005616 | Ga0068852_100424905 | Ga0068852_1004249051 | 269 |
| 64 | 3300005617 | Ga0068859_100004564 | Ga0068859_1000045644 | 269 |
| 65 | 3300005719 | Ga0068861_100285825 | Ga0068861_1002858251 | 269 |
| 66 | 3300006237 | Ga0097621_100011413 | Ga0097621_1000114134 | 269 |
| 67 | 3300006237 | Ga0097621_100014321 | Ga0097621_1000143215 | 269 |
| 68 | 3300006358 | Ga0068871_100020512 | Ga0068871_1000205125 | 269 |
| 69 | 3300006358 | Ga0068871_100596141 | Ga0068871_1005961411 | 269 |
| 70 | 3300006358 | Ga0068871_100648678 | Ga0068871_1006486782 | 269 |
| 71 | 3300006881 | Ga0068865_100001734 | Ga0068865_1000017346 | 269 |
| 72 | 3300006931 | Ga0097620_100004564 | Ga0097620_10000456415 | 269 |
| 73 | 3300009101 | Ga0105247_10002825 | Ga0105247_100028258 | 269 |
| 74 | 3300009148 | Ga0105243_10000079 | Ga0105243_1000007912 | 269 |
| 75 | 3300009174 | Ga0105241_10000243 | Ga0105241_1000024331 | 269 |
| 76 | 3300009174 | Ga0105241_10080404 | Ga0105241_100804042 | 269 |
| 77 | 3300009174 | Ga0105241_10200011 | Ga0105241_102000112 | 269 |
| 78 | 3300009176 | Ga0105242_10020978 | Ga0105242_100209784 | 269 |
| 79 | 3300009545 | Ga0105237_10094636 | Ga0105237_100946361 | 269 |
| 80 | 3300009545 | Ga0105237_10204469 | Ga0105237_102044692 | 269 |
| 81 | 3300009553 | Ga0105249_10358737 | Ga0105249_103587373 | 269 |
| 82 | 3300010375 | Ga0105239_10018537 | Ga0105239_100185379 | 269 |
| 83 | 3300013100 | Ga0157373_10010273 | Ga0157373_100102734 | 269 |
| 84 | 3300013102 | Ga0157371_10000140 | Ga0157371_1000014011 | 269 |
| 85 | 3300013104 | Ga0157370_10000977 | Ga0157370_1000097734 | 269 |
| 86 | 3300013104 | Ga0157370_10115339 | Ga0157370_101153392 | 269 |
| 87 | 3300013296 | Ga0157374_10007898 | Ga0157374_100078985 | 269 |
| 88 | 3300013296 | Ga0157374_10127437 | Ga0157374_101274372 | 269 |
| 89 | 3300013296 | Ga0157374_10227915 | Ga0157374_102279151 | 269 |
| 90 | 3300013297 | Ga0157378_10151061 | Ga0157378_101510612 | 269 |
| 91 | 3300013306 | Ga0163162_10052100 | Ga0163162_100521002 | 269 |
| 92 | 3300013306 | Ga0163162_10372588 | Ga0163162_103725882 | 269 |
| 93 | 3300013306 | Ga0163162_10793065 | Ga0163162_107930651 | 269 |
| 94 | 3300013308 | Ga0157375_10003634 | Ga0157375_100036346 | 269 |
| 95 | 3300013308 | Ga0157375_10063267 | Ga0157375_100632672 | 269 |
| 96 | 3300014497 | Ga0182008_10000755 | Ga0182008_1000075527 | 269 |
| 97 | 3300014968 | Ga0157379_10259548 | Ga0157379_102595481 | 269 |
| 98 | 3300014969 | Ga0157376_10011952 | Ga0157376_100119523 | 269 |
| 99 | 3300014969 | Ga0157376_10503671 | Ga0157376_105036712 | 269 |
| 100 | 3300015261 | Ga0182006_1000016 | Ga0182006_100001610 | 269 |
| 101 | 3300015682 | Ga0183373_1001 | Ga0183373_1001725 | 269 |
| 102 | 3300017792 | Ga0163161_10001157 | Ga0163161_100011576 | 269 |
| 103 | 3300017792 | Ga0163161_10062898 | Ga0163161_100628984 | 269 |
| 104 | 3300025304 | Ga0209257_1000511 | Ga0209257_100051131 | 269 |
| 105 | 3300025728 | Ga0207655_1000381 | Ga0207655_100038130 | 269 |
| 106 | 3300025899 | Ga0207642_10052112 | Ga0207642_100521123 | 269 |
| 107 | 3300025899 | Ga0207642_10149193 | Ga0207642_101491931 | 269 |
| 108 | 3300025907 | Ga0207645_10000184 | Ga0207645_1000018435 | 269 |
| 109 | 3300025908 | Ga0207643_10195919 | Ga0207643_101959192 | 269 |
| 110 | 3300025911 | Ga0207654_10409580 | Ga0207654_104095801 | 269 |
| 111 | 3300025913 | Ga0207695_10001273 | Ga0207695_1000127328 | 269 |
| 112 | 3300025914 | Ga0207671_10021179 | Ga0207671_100211792 | 269 |
| 113 | 3300025914 | Ga0207671_10041023 | Ga0207671_100410234 | 269 |
| 114 | 3300025914 | Ga0207671_10221703 | Ga0207671_102217032 | 269 |
| 115 | 3300025925 | Ga0207650_10060386 | Ga0207650_100603862 | 269 |
| 116 | 3300025933 | Ga0207706_10012130 | Ga0207706_100121307 | 269 |
| 117 | 3300025935 | Ga0207709_10000006 | Ga0207709_10000006110 | 269 |
| 118 | 3300025938 | Ga0207704_10000176 | Ga0207704_1000017621 | 269 |
| 119 | 3300025942 | Ga0207689_10553569 | Ga0207689_105535692 | 269 |
| 120 | 3300025960 | Ga0207651_10179353 | Ga0207651_101793531 | 269 |
| 121 | 3300026023 | Ga0207677_10219728 | Ga0207677_102197282 | 269 |
| 122 | 3300026023 | Ga0207677_10370799 | Ga0207677_103707992 | 269 |
| 123 | 3300026118 | Ga0207675_100362232 | Ga0207675_1003622322 | 269 |
| 124 | 3300026121 | Ga0207683_10170301 | Ga0207683_101703012 | 269 |
| 125 | 3300026121 | Ga0207683_10196065 | Ga0207683_101960651 | 269 |
| 126 | 3300026142 | Ga0207698_10055508 | Ga0207698_100555081 | 269 |
| 127 | 3300028786 | Ga0307517_10007248 | Ga0307517_100072488 | 269 |
| 128 | 3300031251 | Ga0265327_10000026 | Ga0265327_10000026148 | 269 |
| 129 | 3300031730 | Ga0307516_10030599 | Ga0307516_100305994 | 269 |
| 130 | 3300031824 | Ga0307413_10000905 | Ga0307413_1000090510 | 269 |
| 131 | 3300032004 | Ga0307414_10101096 | Ga0307414_101010962 | 269 |
| 132 | 3300032004 | Ga0307414_10317104 | Ga0307414_103171041 | 269 |
| 133 | 3300032004 | Ga0307414_10592113 | Ga0307414_105921131 | 269 |
| 134 | 3300032005 | Ga0307411_10000001 | Ga0307411_10000001670 | 269 |
| 135 | 3300033180 | Ga0307510_10005596 | Ga0307510_1000559622 | 269 |
| 136 | 3300044683 | Ga0466965_0089945 | Ga0466965_0089945_23_850 | 269 |
| 137 | 3300045049 | Ga0466959_0106749 | Ga0466959_0106749_816_1628 | 269 |
| 138 | 3300046522 | Ga0495643_0086917 | Ga0495643_0086917_48_866 | 269 |
| 139 | 3300048904 | Ga0496101_0070069 | Ga0496101_0070069_358_1170 | 269 |
| 140 | 3300048919 | Ga0496116_0004434 | Ga0496116_0004434_10314_11123 | 269 |
| 141 | 3300048920 | Ga0496117_0012230 | Ga0496117_0012230_1646_2455 | 269 |
| 142 | 3300048926 | Ga0496123_0073878 | Ga0496123_0073878_789_1598 | 269 |
| 143 | 3300048928 | Ga0496125_0230441 | Ga0496125_0230441_308_1123 | 269 |
| 144 | 3300048929 | Ga0496126_0008148 | Ga0496126_0008148_3064_3909 | 269 |
| 145 | 3300048929 | Ga0496126_0008148 | Ga0496126_0008148_4223_5035 | 269 |
| 146 | 3300049763 | Ga0501266_000005 | Ga0501266_000005_323563_324408 | 269 |
| 147 | 3300053096 | Ga0500641_0106080 | Ga0500641_0106080_374_1195 | 269 |
| 148 | 3300053134 | Ga0500658_0000019 | Ga0500658_0000019_44684_45529 | 269 |
| 149 | 3300053726 | Ga0500584_012370 | Ga0500584_012370_914_1738 | 269 |
| 150 | 3300005539 | Ga0068853_100044943 | Ga0068853_1000449433 | 271 |
| 151 | 3300005548 | Ga0070665_100000010 | Ga0070665_10000001033 | 271 |
| 152 | 3300005563 | Ga0068855_100009561 | Ga0068855_1000095613 | 271 |
| 153 | 3300009093 | Ga0105240_10057449 | Ga0105240_100574494 | 271 |
| 154 | 3300013306 | Ga0163162_10000412 | Ga0163162_1000041232 | 271 |
| 155 | 3300025913 | Ga0207695_10046578 | Ga0207695_100465784 | 271 |
| 156 | 3300025949 | Ga0207667_10027333 | Ga0207667_100273334 | 271 |
| 157 | 3300026041 | Ga0207639_10017886 | Ga0207639_100178863 | 271 |
| 158 | 3300028379 | Ga0268266_10000094 | Ga0268266_1000009433 | 271 |
| 159 | 3300005334 | Ga0068869_100027311 | Ga0068869_1000273112 | 273 |
| 160 | 3300005335 | Ga0070666_10000065 | Ga0070666_1000006526 | 273 |
| 161 | 3300005355 | Ga0070671_100023192 | Ga0070671_1000231921 | 273 |
| 162 | 3300005543 | Ga0070672_100378448 | Ga0070672_1003784482 | 273 |
| 163 | 3300005548 | Ga0070665_100173083 | Ga0070665_1001730832 | 273 |
| 164 | 3300005617 | Ga0068859_100000006 | Ga0068859_100000006302 | 273 |
| 165 | 3300005618 | Ga0068864_100017835 | Ga0068864_1000178351 | 273 |
| 166 | 3300005834 | Ga0068851_10038707 | Ga0068851_100387072 | 273 |
| 167 | 3300005841 | Ga0068863_100014118 | Ga0068863_1000141183 | 273 |
| 168 | 3300005842 | Ga0068858_100022618 | Ga0068858_1000226186 | 273 |
| 169 | 3300006931 | Ga0097620_100000006 | Ga0097620_100000006302 | 273 |
| 170 | 3300009545 | Ga0105237_10005786 | Ga0105237_100057865 | 273 |
| 171 | 3300011119 | Ga0105246_10015306 | Ga0105246_100153061 | 273 |
| 172 | 3300013306 | Ga0163162_10206050 | Ga0163162_102060502 | 273 |
| 173 | 3300014325 | Ga0163163_10147207 | Ga0163163_101472072 | 273 |
| 174 | 3300014969 | Ga0157376_10648560 | Ga0157376_106485601 | 273 |
| 175 | 3300025321 | Ga0207656_10057579 | Ga0207656_100575791 | 273 |
| 176 | 3300025900 | Ga0207710_10018741 | Ga0207710_100187411 | 273 |
| 177 | 3300025903 | Ga0207680_10000028 | Ga0207680_100000287 | 273 |
| 178 | 3300025911 | Ga0207654_10001989 | Ga0207654_100019894 | 273 |
| 179 | 3300025931 | Ga0207644_10185281 | Ga0207644_101852811 | 273 |
| 180 | 3300025940 | Ga0207691_10106008 | Ga0207691_101060083 | 273 |
| 181 | 3300025942 | Ga0207689_10002127 | Ga0207689_100021279 | 273 |
| 182 | 3300025960 | Ga0207651_10043453 | Ga0207651_100434532 | 273 |
| 183 | 3300026035 | Ga0207703_10001345 | Ga0207703_100013455 | 273 |
| 184 | 3300026088 | Ga0207641_10000122 | Ga0207641_1000012223 | 273 |
| 185 | 3300026095 | Ga0207676_10013585 | Ga0207676_100135852 | 273 |
| 186 | 3300028379 | Ga0268266_10508139 | Ga0268266_105081391 | 273 |
| 187 | 3300028381 | Ga0268264_10004952 | Ga0268264_100049524 | 273 |
| 188 | 3300013297 | Ga0157378_10038559 | Ga0157378_100385593 | 278 |
| 189 | 3300028794 | Ga0307515_10000071 | Ga0307515_10000071160 | 294 |
| 190 | 3300013308 | Ga0157375_10072643 | Ga0157375_100726433 | 299 |
| 191 | 3300048925 | Ga0496122_0007090 | Ga0496122_0007090_9263_10261 | 301 |
| 192 | 3300003323 | rootH1_10073751 | rootH1_100737512 | 310 |
| 193 | 2162886007 | SwRhRL2b_contig_1663050 | SwRhRL2b_0644.00005330 | 318 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1o5u-assembly2.cif.gz_B | crystal structure of a duf861 family protein (tm1112) from thermotoga maritima at 1.83 a resolution | 0.8809 | 65 | 134 |
| 3lsg-assembly2.cif.gz_D | the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 | 0.8752 | 221 | 307 |
| 3w6v-assembly1.cif.gz_A | crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna | 0.8607 | 221 | 317 |
| 3lsg-assembly3.cif.gz_E | the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 | 0.8538 | 221 | 310 |
| 3lsg-assembly1.cif.gz_A | the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 | 0.8434 | 221 | 315 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1d5yD02 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.8979 | 269 | 316 | 1.10.10.60 |
| 5suwA03 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.89 | 266 | 316 | 1.10.10.60 |
| af_P32677_219_275_1.10.10.60 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.8887 | 269 | 317 | 1.10.10.60 |
| af_P96245_143_250_1.10.10.60 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.8865 | 221 | 313 | 1.10.10.60 |
| 3lsgA02 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.8845 | 271 | 315 | 1.10.10.60 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A1F8V3J0-F1-model_v4 | HTH araC/xylS-type domain-containing protein | 0.8912 | 221 | 315 |
GO:0003700
GO:0043565 |
| AF-A0A1H9CIJ8-F1-model_v4 | AraC-type DNA-binding protein | 0.8828 | 229 | 316 |
GO:0003700
GO:0009893 GO:0043565 |
| AF-U2FDT1-F1-model_v4 | Arginyl-tRNA synthetase protein (EC 6.1.1.19) | 0.8805 | 221 | 315 |
GO:0003700
GO:0004814 GO:0043565 |
| AF-A0A5Q4T4C4-F1-model_v4 | AraC family transcriptional regulator | 0.8762 | 221 | 316 |
GO:0003700
GO:0043565 |
| AF-D3F6N9-F1-model_v4 | Transcriptional regulator, AraC family | 0.8748 | 221 | 317 |
GO:0003700
GO:0043565 |
Predicted Structure (AlphaFold2)
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