F296114

General Info

Members Datasets Scaffolds Average Seq Length
192 107 384 414

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0011785|Ga0495580_0011785_1916_3364
Length 482
Sequence MRRQSLRALTNLSSAPVSPAVASVGPHWSRHESWGRRCCNNLNRHLGRMLFWKPSDALRITEVTCGMTWSRVSTGALLAAICLQHASAQRTFTWQEIRDKFKAQNPTLRAGEIGISESRTQEITAYLRPNPDLTATADQINPFTANPYRPFAYTLPFGSVSYLHERQHKRELRLESAKKATDIAVSSQADLERNLLFSLRHAFVQTLQAKSVLALARENLTYYDRLLSVNRDRYKAGDIAEMDLDRLELQRVQFESDVQTAEVNLSTAKIQLLMLLNDRTPVETFDVTGPFDFTDQILPLDEFRSMALETRPDLKAAVQAIDKSSTDHRLAMANGSTDPTFALDIARNPPVPVYFGVSVTIPLRIFDKNQGEKARTELDMKRSEKLRDATRAQVFSDVDSAHAALGSNLALLRPYKAKYLQTAVKVRDTVSFAYQHGGASLLDFLNAQNDYRSIQLNYLNLLGSYLTAASQLNLAVGREVIQ

Samples

Sample ID Description Type Environment
1 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
14 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
17 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
18 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
19 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
42 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
43 3300022732 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU1 Metagenome Rhizosphere
44 3300022734 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU3 Metagenome Rhizosphere
45 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
46 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
67 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
68 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
70 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
71 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
72 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
73 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
74 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
75 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
76 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
77 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
78 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
79 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
80 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
81 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
82 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
83 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
84 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
85 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
86 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
87 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
88 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
89 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
90 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
91 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
92 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
93 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
94 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
99 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
100 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
101 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
102 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
103 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
104 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.92
Metatranscriptomes 2.08
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.12
Rhizosphere 93.75
Stem 0
Stem Tuber 0
Unclassified 23.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495580_0011785 3300046472 Bacteria 6748
2 Ga0070658_10013708 3300005327 Bacteria 6505
3 Ga0070666_10057193 3300005335 Unclassified 2635
4 Ga0070713_100013360 3300005436 Bacteria 6061
5 Ga0070713_100126516 3300005436 Unclassified 2248
6 Ga0070713_100304313 3300005436 Bacteria 1468
7 Ga0070710_10036313 3300005437 Unclassified 2694
8 Ga0070711_100001360 3300005439 Bacteria 13359
9 Ga0070708_100114454 3300005445 Bacteria 2482
10 Ga0070681_10010256 3300005458 Bacteria 9245
11 Ga0070706_100004598 3300005467 Bacteria 13244
12 Ga0070706_100068344 3300005467 Bacteria 3285
13 Ga0070707_100011403 3300005468 Bacteria 8288
14 Ga0070707_100087024 3300005468 Unclassified 3022
15 Ga0070707_100088725 3300005468 Unclassified 2992
16 Ga0070698_100009993 3300005471 Bacteria 10143
17 Ga0070698_100197145 3300005471 Unclassified 1950
18 Ga0070697_100001015 3300005536 Bacteria 21202
19 Ga0070697_100002141 3300005536 Bacteria 15137
20 Ga0070697_100008614 3300005536 Bacteria 7963
21 Ga0070697_100037733 3300005536 Bacteria 3903
22 Ga0068863_100212103 3300005841 Bacteria 1865
23 Ga0068860_100139600 3300005843 Unclassified 2328
24 Ga0070717_10002930 3300006028 Bacteria 12114
25 Ga0070717_10019924 3300006028 Bacteria 5268
26 Ga0070717_10089415 3300006028 Bacteria 2597
27 Ga0070717_10268096 3300006028 Unclassified 1512
28 Ga0070715_10021200 3300006163 Bacteria 2517
29 Ga0070716_100007125 3300006173 Bacteria 5493
30 Ga0070716_100025368 3300006173 Bacteria 3163
31 Ga0070716_100026641 3300006173 Bacteria 3098
32 Ga0070716_100053368 3300006173 Bacteria 2305
33 Ga0070716_100112468 3300006173 Bacteria 1690
34 Ga0070712_100011036 3300006175 Bacteria 5717
35 Ga0070712_100035343 3300006175 Plasmid 3392
36 Ga0097621_100013871 3300006237 Bacteria 6016
37 Ga0097621_100015159 3300006237 Bacteria 5792
38 Ga0097621_100236930 3300006237 Unclassified 1594
39 Ga0068871_100006569 3300006358 Bacteria 8240
40 Ga0075428_100045456 3300006844 Plasmid 4824
41 Ga0075434_100003957 3300006871 Bacteria 13269
42 Ga0075434_100028684 3300006871 Bacteria 5471
43 Ga0075436_100000930 3300006914 Bacteria 19521
44 Ga0075436_100003207 3300006914 Bacteria 11216
45 Ga0075436_100021374 3300006914 Unclassified 4443
46 Ga0097620_100251502 3300006931 Unclassified 1858
47 Ga0099794_10000285 3300007265 Bacteria 17395
48 Ga0099794_10006675 3300007265 Bacteria 4688
49 Ga0099794_10018668 3300007265 Bacteria 3113
50 Ga0099794_10026657 3300007265 Unclassified 2674
51 Ga0099794_10037794 3300007265 Eukaryota 2287
52 Ga0099794_10059734 3300007265 Bacteria 1850
53 Ga0099794_10098987 3300007265 Unclassified 1454
54 Ga0105240_10025617 3300009093 Bacteria 7746
55 Ga0105240_10057110 3300009093 Bacteria 4879
56 Ga0105240_10212747 3300009093 Bacteria 2258
57 Ga0111539_10112123 3300009094 Unclassified 3199
58 Ga0114129_10007295 3300009147 Bacteria 15740
59 Ga0114129_10155354 3300009147 Bacteria 3129
60 Ga0105241_10098678 3300009174 Bacteria 2318
61 Ga0105248_10013413 3300009177 Bacteria 9020
62 Ga0105248_10042155 3300009177 Bacteria 5118
63 Ga0105248_10177407 3300009177 Bacteria 2401
64 Ga0105248_10349301 3300009177 Unclassified 1665
65 Ga0105237_10188879 3300009545 Bacteria 2060
66 Ga0105238_10052526 3300009551 Bacteria 4097
67 Ga0105238_10162828 3300009551 Bacteria 2207
68 Ga0105249_10230043 3300009553 Unclassified 1828
69 Ga0105239_10016763 3300010375 Bacteria 8099
70 Ga0105239_10086671 3300010375 Bacteria 3452
71 Ga0157369_10101481 3300013105 Bacteria 3066
72 Ga0157374_10310984 3300013296 Unclassified 1560
73 Ga0157378_10004906 3300013297 Bacteria 11729
74 Ga0157378_10008456 3300013297 Bacteria 8965
75 Ga0157378_10023132 3300013297 Bacteria 5469
76 Ga0163162_10000134 3300013306 Bacteria 67221
77 Ga0163162_10017355 3300013306 Bacteria 7042
78 Ga0163163_10028651 3300014325 Bacteria 5351
79 Ga0157379_10056500 3300014968 Bacteria 3506
80 Ga0157379_10261029 3300014968 Unclassified 1574
81 Ga0157376_10000005 3300014969 Bacteria 443695
82 Ga0213876_10000871 3300021384 Bacteria 20200
83 Ga0224569_100666 3300022732 Bacteria 2932
84 Ga0224571_100399 3300022734 Bacteria 2361
85 Ga0228598_1000359 3300024227 Bacteria 9035
86 Ga0207692_10033611 3300025898 Bacteria 2476
87 Ga0207699_10014729 3300025906 Unclassified 4041
88 Ga0207705_10027111 3300025909 Unclassified 4084
89 Ga0207684_10009410 3300025910 Bacteria 8628
90 Ga0207684_10062130 3300025910 Bacteria 3172
91 Ga0207654_10105806 3300025911 Bacteria 1741
92 Ga0207707_10001398 3300025912 Bacteria 22342
93 Ga0207695_10056366 3300025913 Unclassified 4089
94 Ga0207693_10001215 3300025915 Bacteria 22979
95 Ga0207693_10052513 3300025915 Unclassified 3197
96 Ga0207693_10140924 3300025915 Bacteria 1896
97 Ga0207663_10001175 3300025916 Bacteria 12071
98 Ga0207646_10000404 3300025922 Bacteria 57874
99 Ga0207646_10063056 3300025922 Bacteria 3309
100 Ga0207646_10084384 3300025922 Unclassified 2842
101 Ga0207646_10126970 3300025922 Unclassified 2294
102 Ga0207686_10088781 3300025934 Unclassified 2036
103 Ga0207665_10025141 3300025939 Bacteria 3929
104 Ga0207665_10030861 3300025939 Unclassified 3544
105 Ga0207665_10035189 3300025939 Unclassified 3323
106 Ga0207665_10158017 3300025939 Bacteria 1629
107 Ga0207711_10026264 3300025941 Bacteria 4886
108 Ga0207711_10144353 3300025941 Unclassified 2143
109 Ga0207677_10187258 3300026023 Bacteria 1634
110 Ga0207641_10156463 3300026088 Unclassified 2068
111 Ga0207641_10198708 3300026088 Bacteria 1847
112 Ga0209588_1012982 3300027671 Unclassified 2536
113 Ga0209588_1031171 3300027671 Bacteria 1705
114 Ga0209588_1041667 3300027671 Unclassified 1482
115 Ga0265356_1002311 3300028017 Bacteria 2571
116 Ga0268264_10116336 3300028381 Unclassified 2350
117 Ga0265323_10000344 3300028653 Bacteria 26616
118 Ga0265338_10046610 3300028800 Bacteria 3970
119 Ga0265338_10050479 3300028800 Bacteria 3759
120 Ga0265338_10109857 3300028800 Bacteria 2224
121 Ga0265324_10007112 3300029957 Bacteria 4578
122 Ga0265762_1000560 3300030760 Bacteria 6525
123 Ga0265762_1001015 3300030760 Bacteria 5042
124 Ga0265760_10000696 3300031090 Bacteria 9584
125 Ga0265760_10002503 3300031090 Bacteria 5364
126 Ga0265332_10066383 3300031238 Bacteria 1539
127 Ga0265320_10001636 3300031240 Bacteria 16012
128 Ga0265325_10015448 3300031241 Bacteria 4292
129 Ga0265340_10015150 3300031247 Bacteria 4010
130 Ga0265331_10002142 3300031250 Bacteria 13575
131 Ga0265316_10000253 3300031344 Bacteria 60909
132 Ga0265316_10001334 3300031344 Bacteria 26542
133 Ga0265316_10004261 3300031344 Bacteria 14285
134 Ga0265316_10042142 3300031344 Bacteria 3649
135 Ga0265316_10068545 3300031344 Bacteria 2740
136 Ga0265314_10017071 3300031711 Bacteria 5707
137 Ga0373954_0002556 3300035118 Bacteria 7644
138 Ga0373955_0059336 3300035172 Bacteria 2107
139 Ga0373955_0079903 3300035172 Unclassified 1846
140 Ga0373927_0001250 3300035695 Bacteria 19284
141 Ga0373937_0003529 3300036401 Bacteria 13163
142 Ga0373937_0010286 3300036401 Bacteria 8166
143 Ga0373937_0028554 3300036401 Bacteria 5048
144 Ga0373937_0035427 3300036401 Bacteria 4543
145 Ga0373937_0241019 3300036401 Unclassified 1704
146 Ga0373925_0000318 3300037068 Bacteria 50259
147 Ga0373925_0057092 3300037068 Unclassified 2925
148 Ga0373925_0062329 3300037068 Bacteria 2804
149 Ga0436364_0334957 3300037853 Bacteria 12182
150 Ga0436364_1357954 3300037853 Bacteria 2253
151 Ga0395901_0301993 3300038443 Unclassified 1660
152 Ga0436365_0416506 3300039437 Bacteria 4788
153 Ga0436365_1643961 3300039437 Bacteria 16026
154 Ga0436363_0666033 3300039450 Unclassified 1472
155 Ga0495651_0004934 3300046462 Bacteria 10200
156 Ga0495651_0050518 3300046462 Bacteria 3208
157 Ga0495580_0007233 3300046472 Bacteria 8928
158 Ga0495580_0040999 3300046472 Bacteria 3304
159 Ga0495580_0082649 3300046472 Bacteria 2238
160 Ga0495580_0083517 3300046472 Unclassified 2225
161 Ga0495582_0019019 3300046473 Unclassified 3759
162 Ga0495594_0004604 3300046499 Bacteria 7104
163 Ga0495608_0008077 3300046511 Bacteria 7398
164 Ga0495630_0084721 3300046517 Bacteria 2393
165 Ga0495665_0053326 3300046531 Unclassified 2139
166 Ga0495645_0017339 3300046543 Bacteria 5158
167 Ga0495667_0000175 3300046559 Bacteria 43286
168 Ga0495667_0027084 3300046559 Bacteria 3864
169 Ga0495667_0034805 3300046559 Bacteria 3368
170 Ga0495657_0000260 3300046675 Bacteria 48233
171 Ga0495623_0118121 3300046679 Bacteria 1600
172 Ga0495613_0105706 3300046689 Unclassified 2032
173 Ga0495604_0088651 3300047317 Bacteria 2301
174 Ga0495674_0014092 3300047319 Bacteria 7492
175 Ga0495674_0205948 3300047319 Bacteria 1631
176 Ga0495675_0035024 3300047444 Bacteria 3207
177 Ga0495675_0051355 3300047444 Bacteria 2619
178 Ga0495684_0002181 3300047471 Bacteria 15667
179 Ga0495684_0049643 3300047471 Bacteria 3205
180 Ga0495602_0008138 3300048088 Bacteria 10947
181 Ga0496100_0013479 3300048903 Bacteria 4716
182 Ga0496104_0117782 3300048907 Bacteria 2549
183 Ga0496104_0406997 3300048907 Unclassified 1273
184 Ga0496106_0224807 3300048909 Unclassified 1497
185 Ga0496115_0006203 3300048918 Bacteria 8743
186 Ga0496115_0168897 3300048918 Unclassified 1809
187 nmdc:mga05p37_19364_c1 3300050507 Bacteria 8233
188 nmdc:mga05p37_2082_c1 3300050507 Bacteria 23356
189 nmdc:mga0n895_3964_c1 3300050512 Bacteria 12035
190 nmdc:mga08x19_2322_c1 3300050514 Bacteria 11537
191 nmdc:mga08x19_29778_c1 3300050514 Unclassified 3426
192 nmdc:mga08x19_473_c1 3300050514 Bacteria 27166
193 Ga0495580_0011785
194 Ga0070658_10013708
195 Ga0070666_10057193
196 Ga0070713_100013360
197 Ga0070713_100126516
198 Ga0070713_100304313
199 Ga0070710_10036313
200 Ga0070711_100001360
201 Ga0070708_100114454
202 Ga0070681_10010256
203 Ga0070706_100004598
204 Ga0070706_100068344
205 Ga0070707_100011403
206 Ga0070707_100087024
207 Ga0070707_100088725
208 Ga0070698_100009993
209 Ga0070698_100197145
210 Ga0070697_100001015
211 Ga0070697_100002141
212 Ga0070697_100008614
213 Ga0070697_100037733
214 Ga0068863_100212103
215 Ga0068860_100139600
216 Ga0070717_10002930
217 Ga0070717_10019924
218 Ga0070717_10089415
219 Ga0070717_10268096
220 Ga0070715_10021200
221 Ga0070716_100007125
222 Ga0070716_100025368
223 Ga0070716_100026641
224 Ga0070716_100053368
225 Ga0070716_100112468
226 Ga0070712_100011036
227 Ga0070712_100035343
228 Ga0097621_100013871
229 Ga0097621_100015159
230 Ga0097621_100236930
231 Ga0068871_100006569
232 Ga0075428_100045456
233 Ga0075434_100003957
234 Ga0075434_100028684
235 Ga0075436_100000930
236 Ga0075436_100003207
237 Ga0075436_100021374
238 Ga0097620_100251502
239 Ga0099794_10000285
240 Ga0099794_10006675
241 Ga0099794_10018668
242 Ga0099794_10026657
243 Ga0099794_10037794
244 Ga0099794_10059734
245 Ga0099794_10098987
246 Ga0105240_10025617
247 Ga0105240_10057110
248 Ga0105240_10212747
249 Ga0111539_10112123
250 Ga0114129_10007295
251 Ga0114129_10155354
252 Ga0105241_10098678
253 Ga0105248_10013413
254 Ga0105248_10042155
255 Ga0105248_10177407
256 Ga0105248_10349301
257 Ga0105237_10188879
258 Ga0105238_10052526
259 Ga0105238_10162828
260 Ga0105249_10230043
261 Ga0105239_10016763
262 Ga0105239_10086671
263 Ga0157369_10101481
264 Ga0157374_10310984
265 Ga0157378_10004906
266 Ga0157378_10008456
267 Ga0157378_10023132
268 Ga0163162_10000134
269 Ga0163162_10017355
270 Ga0163163_10028651
271 Ga0157379_10056500
272 Ga0157379_10261029
273 Ga0157376_10000005
274 Ga0213876_10000871
275 Ga0224569_100666
276 Ga0224571_100399
277 Ga0228598_1000359
278 Ga0207692_10033611
279 Ga0207699_10014729
280 Ga0207705_10027111
281 Ga0207684_10009410
282 Ga0207684_10062130
283 Ga0207654_10105806
284 Ga0207707_10001398
285 Ga0207695_10056366
286 Ga0207693_10001215
287 Ga0207693_10052513
288 Ga0207693_10140924
289 Ga0207663_10001175
290 Ga0207646_10000404
291 Ga0207646_10063056
292 Ga0207646_10084384
293 Ga0207646_10126970
294 Ga0207686_10088781
295 Ga0207665_10025141
296 Ga0207665_10030861
297 Ga0207665_10035189
298 Ga0207665_10158017
299 Ga0207711_10026264
300 Ga0207711_10144353
301 Ga0207677_10187258
302 Ga0207641_10156463
303 Ga0207641_10198708
304 Ga0209588_1012982
305 Ga0209588_1031171
306 Ga0209588_1041667
307 Ga0265356_1002311
308 Ga0268264_10116336
309 Ga0265323_10000344
310 Ga0265338_10046610
311 Ga0265338_10050479
312 Ga0265338_10109857
313 Ga0265324_10007112
314 Ga0265762_1000560
315 Ga0265762_1001015
316 Ga0265760_10000696
317 Ga0265760_10002503
318 Ga0265332_10066383
319 Ga0265320_10001636
320 Ga0265325_10015448
321 Ga0265340_10015150
322 Ga0265331_10002142
323 Ga0265316_10000253
324 Ga0265316_10001334
325 Ga0265316_10004261
326 Ga0265316_10042142
327 Ga0265316_10068545
328 Ga0265314_10017071
329 Ga0373954_0002556
330 Ga0373955_0059336
331 Ga0373955_0079903
332 Ga0373927_0001250
333 Ga0373937_0003529
334 Ga0373937_0010286
335 Ga0373937_0028554
336 Ga0373937_0035427
337 Ga0373937_0241019
338 Ga0373925_0000318
339 Ga0373925_0057092
340 Ga0373925_0062329
341 Ga0436364_0334957
342 Ga0436364_1357954
343 Ga0395901_0301993
344 Ga0436365_0416506
345 Ga0436365_1643961
346 Ga0436363_0666033
347 Ga0495651_0004934
348 Ga0495651_0050518
349 Ga0495580_0007233
350 Ga0495580_0040999
351 Ga0495580_0082649
352 Ga0495580_0083517
353 Ga0495582_0019019
354 Ga0495594_0004604
355 Ga0495608_0008077
356 Ga0495630_0084721
357 Ga0495665_0053326
358 Ga0495645_0017339
359 Ga0495667_0000175
360 Ga0495667_0027084
361 Ga0495667_0034805
362 Ga0495657_0000260
363 Ga0495623_0118121
364 Ga0495613_0105706
365 Ga0495604_0088651
366 Ga0495674_0014092
367 Ga0495674_0205948
368 Ga0495675_0035024
369 Ga0495675_0051355
370 Ga0495684_0002181
371 Ga0495684_0049643
372 Ga0495602_0008138
373 Ga0496100_0013479
374 Ga0496104_0117782
375 Ga0496104_0406997
376 Ga0496106_0224807
377 Ga0496115_0006203
378 Ga0496115_0168897
379 nmdc:mga05p37_19364_c1
380 nmdc:mga05p37_2082_c1
381 nmdc:mga0n895_3964_c1
382 nmdc:mga08x19_2322_c1
383 nmdc:mga08x19_29778_c1
384 nmdc:mga08x19_473_c1

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02321

OEP

Outer membrane efflux protein

300

477

0.91

PF02321

OEP

Outer membrane efflux protein

94

277

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6zre-assembly2.cif.gz_B deciphering the role of the channel constrictions in the opening mechanism of mexab-oprm efflux pump from pseudomonas aeruginosa 0.7357 51 410
1wp1-assembly1.cif.gz_A crystal structure of the drug-discharge outer membrane protein, oprm 0.7331 51 410
7akz-assembly1.cif.gz_A deciphering the role of the channel constrictions in the opening mechanism of mexab-oprm efflux pump from pseudomonas aeruginosa 0.7246 51 411
5azs-assembly1.cif.gz_A crystal structure of a membrane protein from pseudomonas aeruginosa 0.7229 51 409
6wxh-assembly1.cif.gz_B colicin e1 fragment in nanodisc-embedded tolc 0.7198 52 409
ID Description Score Start End Superfamily
af_P75830_95_182_6.10.140.1990 Special;Helix non-globular;Helix Hairpins; 0.8323 325 406 6.10.140.1990
af_P75830_95_182_6.10.140.1990 Special;Helix non-globular;Helix Hairpins; 0.7484 325 406 6.10.140.1990
5azsA01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.7282 51 409 1.20.1600.10
1yc9A01 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.7098 53 410 1.20.1600.10
2vddA00 Mainly Alpha;Up-down Bundle;Outer membrane efflux proteins (OEP);Outer membrane efflux proteins (OEP) 0.703 52 409 1.20.1600.10
ID Description Score Start End GO Terms
AF-A0A4Q7ITQ5-F1-model_v4 Uncharacterized protein 0.8737 229 409 GO:0015562
AF-A0A1Q8AXR3-F1-model_v4 Transporter 0.8428 238 414 GO:0015562
AF-A0A1F4RD09-F1-model_v4 Transporter 0.8422 141 410 GO:0015562
AF-A0A1Q8AXR3-F1-model_v4 Transporter 0.834 238 414 GO:0015562
AF-A0A1F9IST0-F1-model_v4 deleted 0.8329 41 411

Map