F295879

General Info

Members Datasets Scaffolds Average Seq Length
192 150 384 300

Family's Representative Sequence

Representative Sequence 3300031838|Ga0307518_10024871|Ga0307518_100248713
Length 334
Sequence MAYSLGFGLVFGPVIPNVESATINDKCMFRTYIVTAMQLDLNLLTALDALLEEGSVAGAAARLHVTAPAMSRSLGRIRKATGDEILVRTGRHMTPTTRAVAMRTEVHALVRQAHQLLSAQAELDLATLERVFTVRWHDALTAACGTALIAAVHRQAPGVRLRLTAEPGDDTPELRRGEVDLASGTGPPSLPDIRHHLIGHDRLAVAVRPGHPLTEQPMTAERYAAAEHLTVSRRGRLRDRIDDALGHERRVIASAPTTSTALQLARDTDLVVTLPDAVTRAARHQLGLITLPLPLDLPDVPLHLLWHQRHHDDPAHVWLRETATKTLQGLLDPG

Samples

Sample ID Description Type Environment
1 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
13 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
16 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
17 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
18 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
19 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
20 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
21 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
22 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
23 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
28 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
29 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
30 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
31 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
32 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
33 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
34 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
35 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
36 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
37 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
38 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
39 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
40 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
41 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
42 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
43 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
44 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
45 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
46 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
47 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
48 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
49 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
50 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
51 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
52 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
53 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
54 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
55 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
56 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
57 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
58 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
59 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
60 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
61 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
62 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
63 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
64 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
65 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
66 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
67 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
68 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
69 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
70 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
71 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
72 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
73 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
74 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
75 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
76 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
77 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
78 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
79 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
80 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
81 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
82 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
83 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
84 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
85 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
86 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
87 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
88 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
89 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
90 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
91 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
94 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
95 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
96 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
97 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
98 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
99 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
114 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
115 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
116 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
117 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
118 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
119 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
120 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
121 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
122 2558860280 Kutzneria sp. 744 Isolate Unclassified
123 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
124 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
125 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
126 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
127 2643221647 Streptomyces sp. Root369 Isolate Unclassified
128 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
129 2738541307 Variovorax sp. GV008 Isolate Unclassified
130 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
131 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
132 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
133 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
134 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
135 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
136 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
137 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
138 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
139 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
140 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
141 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
142 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
143 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
144 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
145 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
146 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
147 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
148 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
149 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
150 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.9
Metatranscriptomes 0
Isolates 15.1

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.02
Nodule 0
Rhizoplane 1.04
Rhizosphere 70.83
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307518_10024871 3300031838 Bacteria 4314
2 JGI24739J22299_10035756 3300001989 Bacteria 1681
3 JGI24737J22298_10023478 3300001990 Bacteria 1956
4 rootL2_10015924 3300003322 Bacteria 2849
5 rootH1_10222748 3300003323 Bacteria 4732
6 rootH1_10238144 3300003323 Bacteria 1386
7 Ga0070668_100004565 3300005347 Bacteria 10270
8 Ga0070679_100048684 3300005530 Bacteria 4222
9 Ga0068853_100016487 3300005539 Bacteria 6081
10 Ga0068855_100367007 3300005563 Bacteria 1583
11 Ga0068852_100152819 3300005616 Bacteria 2148
12 Ga0075365_10001322 3300006038 Bacteria 11074
13 Ga0075365_10009392 3300006038 Bacteria 5618
14 Ga0075365_10038296 3300006038 Bacteria 3115
15 Ga0075365_10142894 3300006038 Bacteria 1662
16 Ga0075365_10147988 3300006038 Bacteria 1633
17 Ga0075368_10002159 3300006042 Bacteria 6360
18 Ga0075363_100026373 3300006048 Bacteria 2972
19 Ga0075367_10169902 3300006178 Bacteria 1358
20 Ga0075370_10061168 3300006353 Bacteria 2145
21 Ga0105251_10049776 3300009011 Bacteria 2004
22 Ga0105245_10466802 3300009098 Bacteria 1273
23 Ga0105238_10170356 3300009551 Bacteria 2153
24 Ga0105239_10277180 3300010375 Bacteria 1887
25 Ga0157376_10324004 3300014969 Bacteria 1466
26 Ga0183367_1014 3300015688 Bacteria 330534
27 Ga0207426_1000373 3300025302 Bacteria 78556
28 Ga0207426_1000778 3300025302 Bacteria 35076
29 Ga0207426_1016446 3300025302 Bacteria 2656
30 Ga0207652_10335367 3300025921 Bacteria 1365
31 Ga0207668_10004697 3300025972 Bacteria 8037
32 Ga0207639_10084006 3300026041 Bacteria 2528
33 Ga0209371_1022480 3300027312 Bacteria 1505
34 Ga0307517_10023570 3300028786 Bacteria 7641
35 Ga0307515_10000621 3300028794 Bacteria 82840
36 Ga0268256_1025402 3300030500 Bacteria 1505
37 Ga0307511_10000004 3300030521 Bacteria 190823
38 Ga0307511_10051945 3300030521 Bacteria 3275
39 Ga0316177_1031633 3300030731 Bacteria 5070
40 Ga0316176_1143831 3300030732 Bacteria 6053
41 Ga0314311_1190364 3300030733 Bacteria 2905
42 Ga0316180_1020435 3300030736 Bacteria 2199
43 Ga0307509_10000421 3300031507 Bacteria 71431
44 Ga0307514_10081898 3300031649 Bacteria 2384
45 Ga0307516_10000018 3300031730 Bacteria 200845
46 Ga0307518_10053027 3300031838 Bacteria 2947
47 Ga0307507_10051979 3300033179 Bacteria 3936
48 Ga0307510_10000658 3300033180 Bacteria 35071
49 Ga0451837_1008858 3300041494 Bacteria 2468
50 Ga0439449_0023884 3300042007 Bacteria 2286
51 Ga0466966_0027569 3300044684 Bacteria 3703
52 Ga0466963_0001650 3300044694 Bacteria 12160
53 Ga0466971_0020616 3300044719 Bacteria 2931
54 Ga0466970_0011447 3300044765 Bacteria 4521
55 Ga0466957_0128073 3300044842 Bacteria 1624
56 Ga0466959_0027557 3300045049 Bacteria 4213
57 Ga0466958_0302566 3300045836 Bacteria 1027
58 Ga0466967_0249869 3300045976 Bacteria 1694
59 Ga0466967_0403882 3300045976 Bacteria 1330
60 Ga0495617_015392 3300046452 Bacteria 2593
61 Ga0495627_004853 3300046453 Bacteria 5536
62 Ga0495603_0036314 3300046455 Bacteria 2958
63 Ga0495629_0007502 3300046459 Bacteria 8041
64 Ga0495638_0046813 3300046460 Bacteria 2715
65 Ga0495580_0047585 3300046472 Bacteria 3040
66 Ga0495662_0000362 3300046476 Bacteria 19960
67 Ga0495662_0002492 3300046476 Bacteria 9281
68 Ga0495584_0225403 3300046491 Bacteria 953
69 Ga0495585_0015815 3300046492 Bacteria 4380
70 Ga0495607_0031671 3300046501 Bacteria 3235
71 Ga0495583_0061693 3300046506 Bacteria 1671
72 Ga0495606_0049152 3300046507 Bacteria 2768
73 Ga0495606_0180062 3300046507 Bacteria 1219
74 Ga0495610_0054311 3300046512 Bacteria 1936
75 Ga0495616_0014199 3300046513 Bacteria 4468
76 Ga0495620_0002161 3300046515 Bacteria 11429
77 Ga0495620_0022729 3300046515 Bacteria 3013
78 Ga0495628_0062497 3300046516 Bacteria 2919
79 Ga0495643_0003537 3300046522 Bacteria 11358
80 Ga0495648_0033093 3300046524 Bacteria 3382
81 Ga0495648_0074201 3300046524 Bacteria 1961
82 Ga0495640_0003906 3300046533 Bacteria 11934
83 Ga0495587_0231761 3300046536 Bacteria 1041
84 Ga0495609_0025499 3300046538 Bacteria 2710
85 Ga0495597_0014025 3300046542 Bacteria 3827
86 Ga0495597_0025798 3300046542 Bacteria 2704
87 Ga0495645_0004313 3300046543 Bacteria 9719
88 Ga0495645_0261371 3300046543 Bacteria 1146
89 Ga0495622_0023461 3300046557 Bacteria 2876
90 Ga0495633_0065791 3300046558 Bacteria 1693
91 Ga0495668_0004506 3300046616 Bacteria 9858
92 Ga0495668_0211957 3300046616 Bacteria 1061
93 Ga0495634_0193409 3300046642 Bacteria 1267
94 Ga0495611_0017104 3300046648 Bacteria 3100
95 Ga0495625_0053117 3300046660 Bacteria 2899
96 Ga0495588_0027987 3300046674 Bacteria 2819
97 Ga0495588_0060988 3300046674 Bacteria 1952
98 Ga0495657_0010581 3300046675 Bacteria 6935
99 Ga0495657_0020596 3300046675 Bacteria 4739
100 Ga0495613_0002237 3300046689 Bacteria 14644
101 Ga0495613_0020563 3300046689 Bacteria 4920
102 Ga0495613_0021744 3300046689 Bacteria 4779
103 Ga0495613_0022775 3300046689 Bacteria 4667
104 Ga0495613_0198411 3300046689 Bacteria 1416
105 Ga0495671_0022176 3300046692 Bacteria 3329
106 Ga0495649_0009498 3300046694 Bacteria 5774
107 Ga0495649_0077255 3300046694 Bacteria 1782
108 Ga0495589_0008500 3300046794 Bacteria 5356
109 Ga0495589_0010418 3300046794 Bacteria 4830
110 Ga0495660_0023646 3300046810 Bacteria 3505
111 Ga0495604_0006537 3300047317 Bacteria 9238
112 Ga0495604_0011167 3300047317 Bacteria 7132
113 Ga0495636_0042903 3300047318 Bacteria 1880
114 Ga0495687_018855 3300047443 Bacteria 3399
115 Ga0495687_102082 3300047443 Bacteria 1074
116 Ga0495675_0218128 3300047444 Bacteria 1155
117 Ga0495685_006690 3300047447 Bacteria 3783
118 Ga0495685_044798 3300047447 Bacteria 1508
119 Ga0495681_0014964 3300047470 Bacteria 4417
120 Ga0495686_0166160 3300047472 Bacteria 1286
121 Ga0495614_0020146 3300048089 Bacteria 2885
122 Ga0496109_0008480 3300048912 Bacteria 8737
123 Ga0496110_0265968 3300048913 Bacteria 1561
124 Ga0496122_0117535 3300048925 Bacteria 1726
125 Ga0496123_0011119 3300048926 Bacteria 7850
126 Ga0495678_052132 3300049459 Bacteria 1577
127 Ga0501032_0026167 3300049569 Bacteria 4017
128 Ga0501033_0006837 3300049570 Bacteria 8903
129 Ga0501033_0031625 3300049570 Bacteria 3975
130 Ga0501033_0357781 3300049570 Bacteria 1022
131 Ga0501034_0084908 3300049571 Bacteria 3167
132 Ga0501036_0004422 3300049572 Bacteria 11349
133 Ga0501037_0023705 3300049573 Bacteria 4536
134 Ga0501037_0276485 3300049573 Bacteria 1171
135 Ga0501038_0018272 3300049574 Bacteria 6329
136 Ga0501038_0019970 3300049574 Bacteria 6031
137 Ga0501042_0117409 3300049578 Bacteria 1915
138 Ga0501043_0016011 3300049579 Bacteria 5878
139 Ga0501046_0273126 3300049580 Bacteria 1239
140 Ga0501047_0035942 3300049581 Bacteria 4787
141 Ga0501047_0260066 3300049581 Bacteria 1583
142 Ga0501048_0139925 3300049582 Bacteria 1711
143 Ga0501048_0410057 3300049582 Bacteria 969
144 Ga0501070_0365858 3300049586 Bacteria 1169
145 Ga0501035_0033908 3300049822 Bacteria 4641
146 Ga0501035_0066024 3300049822 Bacteria 3211
147 Ga0501044_0153839 3300049823 Bacteria 2280
148 nmdc:mga03n38_32820_c1 3300050490 Bacteria 2203
149 nmdc:mga0yw44_1170_c1 3300050492 Bacteria 10210
150 nmdc:mga0yw44_138330_c1 3300050492 Bacteria 1581
151 nmdc:mga0yw44_366860_c1 3300050492 Bacteria 971
152 nmdc:mga0yw44_44805_c1 3300050492 Bacteria 2648
153 nmdc:mga0yw44_65802_c1 3300050492 Bacteria 2235
154 nmdc:mga0yw44_9171_c1 3300050492 Bacteria 4980
155 nmdc:mga06z11_129798_c1 3300050494 Bacteria 1414
156 nmdc:mga06z11_29324_c1 3300050494 Bacteria 2650
157 Ga0495601_0201587 3300053077 Bacteria 1300
158 Ga0495612_0107812 3300053078 Bacteria 1190
159 Ga0500644_0017185 3300053088 Bacteria 2095
160 Ga0500644_0029055 3300053088 Bacteria 1735
161 Ga0500560_001200 3300053107 Bacteria 4321
162 Ga0500634_0086014 3300053161 Bacteria 1607
163 Ga0466962_0195229 3300061719 Bacteria 988
164 2559422820 2558860280 Bacteria 11429938
165 2585305510 2582581313 Bacteria 10042643
166 2586059823 2585427649 Bacteria 9053857
167 2644016005 2643221601 Bacteria 7493239
168 2644176741 2643221631 Bacteria 8168043
169 2644267453 2643221647 Bacteria 10741251
170 2644439077 2643221678 Bacteria 9540101
171 2738885875 2738541307 Bacteria 8606193
172 2808916082 2808606375 Bacteria 9466072
173 2809588854 2808606522 Bacteria 9488490
174 2862178756 2862178590 Bacteria 8583590
175 2862281949 2862281513 Bacteria 9621493
176 2877680051 2877676314 Bacteria 9512378
177 2912728008 2912723979 Bacteria 8557534
178 2915770814 2915768154 Bacteria 8424322
179 2918508406 2918501144 Bacteria 8668083
180 2919473187 2919468124 Bacteria 9133025
181 2935393793 2935390628 Bacteria 7043367
182 2954008986 2954002825 Bacteria 9173742
183 2954692403 2954691527 Bacteria 10720516
184 2954707470 2954701450 Bacteria 10834262
185 2997457493 2997451912 Bacteria 8492419
186 2997607581 2997600082 Bacteria 9896405
187 3006493827 3006486233 Bacteria 8157040
188 8025480540 8025478263 Bacteria 8209203
189 8053949830 8053945823 Bacteria 8962862
190 8056055319 8056054917 Bacteria 5736694
191 8056670923 8056667051 Bacteria 6953971
192 8056835155 8056829672 Bacteria 9045328
193 Ga0307518_10024871
194 JGI24739J22299_10035756
195 JGI24737J22298_10023478
196 rootL2_10015924
197 rootH1_10222748
198 rootH1_10238144
199 Ga0070668_100004565
200 Ga0070679_100048684
201 Ga0068853_100016487
202 Ga0068855_100367007
203 Ga0068852_100152819
204 Ga0075365_10001322
205 Ga0075365_10009392
206 Ga0075365_10038296
207 Ga0075365_10142894
208 Ga0075365_10147988
209 Ga0075368_10002159
210 Ga0075363_100026373
211 Ga0075367_10169902
212 Ga0075370_10061168
213 Ga0105251_10049776
214 Ga0105245_10466802
215 Ga0105238_10170356
216 Ga0105239_10277180
217 Ga0157376_10324004
218 Ga0183367_1014
219 Ga0207426_1000373
220 Ga0207426_1000778
221 Ga0207426_1016446
222 Ga0207652_10335367
223 Ga0207668_10004697
224 Ga0207639_10084006
225 Ga0209371_1022480
226 Ga0307517_10023570
227 Ga0307515_10000621
228 Ga0268256_1025402
229 Ga0307511_10000004
230 Ga0307511_10051945
231 Ga0316177_1031633
232 Ga0316176_1143831
233 Ga0314311_1190364
234 Ga0316180_1020435
235 Ga0307509_10000421
236 Ga0307514_10081898
237 Ga0307516_10000018
238 Ga0307518_10053027
239 Ga0307507_10051979
240 Ga0307510_10000658
241 Ga0451837_1008858
242 Ga0439449_0023884
243 Ga0466966_0027569
244 Ga0466963_0001650
245 Ga0466971_0020616
246 Ga0466970_0011447
247 Ga0466957_0128073
248 Ga0466959_0027557
249 Ga0466958_0302566
250 Ga0466967_0249869
251 Ga0466967_0403882
252 Ga0495617_015392
253 Ga0495627_004853
254 Ga0495603_0036314
255 Ga0495629_0007502
256 Ga0495638_0046813
257 Ga0495580_0047585
258 Ga0495662_0000362
259 Ga0495662_0002492
260 Ga0495584_0225403
261 Ga0495585_0015815
262 Ga0495607_0031671
263 Ga0495583_0061693
264 Ga0495606_0049152
265 Ga0495606_0180062
266 Ga0495610_0054311
267 Ga0495616_0014199
268 Ga0495620_0002161
269 Ga0495620_0022729
270 Ga0495628_0062497
271 Ga0495643_0003537
272 Ga0495648_0033093
273 Ga0495648_0074201
274 Ga0495640_0003906
275 Ga0495587_0231761
276 Ga0495609_0025499
277 Ga0495597_0014025
278 Ga0495597_0025798
279 Ga0495645_0004313
280 Ga0495645_0261371
281 Ga0495622_0023461
282 Ga0495633_0065791
283 Ga0495668_0004506
284 Ga0495668_0211957
285 Ga0495634_0193409
286 Ga0495611_0017104
287 Ga0495625_0053117
288 Ga0495588_0027987
289 Ga0495588_0060988
290 Ga0495657_0010581
291 Ga0495657_0020596
292 Ga0495613_0002237
293 Ga0495613_0020563
294 Ga0495613_0021744
295 Ga0495613_0022775
296 Ga0495613_0198411
297 Ga0495671_0022176
298 Ga0495649_0009498
299 Ga0495649_0077255
300 Ga0495589_0008500
301 Ga0495589_0010418
302 Ga0495660_0023646
303 Ga0495604_0006537
304 Ga0495604_0011167
305 Ga0495636_0042903
306 Ga0495687_018855
307 Ga0495687_102082
308 Ga0495675_0218128
309 Ga0495685_006690
310 Ga0495685_044798
311 Ga0495681_0014964
312 Ga0495686_0166160
313 Ga0495614_0020146
314 Ga0496109_0008480
315 Ga0496110_0265968
316 Ga0496122_0117535
317 Ga0496123_0011119
318 Ga0495678_052132
319 Ga0501032_0026167
320 Ga0501033_0006837
321 Ga0501033_0031625
322 Ga0501033_0357781
323 Ga0501034_0084908
324 Ga0501036_0004422
325 Ga0501037_0023705
326 Ga0501037_0276485
327 Ga0501038_0018272
328 Ga0501038_0019970
329 Ga0501042_0117409
330 Ga0501043_0016011
331 Ga0501046_0273126
332 Ga0501047_0035942
333 Ga0501047_0260066
334 Ga0501048_0139925
335 Ga0501048_0410057
336 Ga0501070_0365858
337 Ga0501035_0033908
338 Ga0501035_0066024
339 Ga0501044_0153839
340 nmdc:mga03n38_32820_c1
341 nmdc:mga0yw44_1170_c1
342 nmdc:mga0yw44_138330_c1
343 nmdc:mga0yw44_366860_c1
344 nmdc:mga0yw44_44805_c1
345 nmdc:mga0yw44_65802_c1
346 nmdc:mga0yw44_9171_c1
347 nmdc:mga06z11_129798_c1
348 nmdc:mga06z11_29324_c1
349 Ga0495601_0201587
350 Ga0495612_0107812
351 Ga0500644_0017185
352 Ga0500644_0029055
353 Ga0500560_001200
354 Ga0500634_0086014
355 Ga0466962_0195229
356 2559422820
357 2585305510
358 2586059823
359 2644016005
360 2644176741
361 2644267453
362 2644439077
363 2738885875
364 2808916082
365 2809588854
366 2862178756
367 2862281949
368 2877680051
369 2912728008
370 2915770814
371 2918508406
372 2919473187
373 2935393793
374 2954008986
375 2954692403
376 2954707470
377 2997457493
378 2997607581
379 3006493827
380 8025480540
381 8053949830
382 8056055319
383 8056670923
384 8056835155

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

41

100

0.97

PF03466

LysR_substrate

LysR substrate binding domain

138

328

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.8988 6 71
7trv-assembly1.cif.gz_B crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.8946 1 81
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.8855 3 82
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.8826 3 82
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.8757 3 82
ID Description Score Start End Superfamily
af_P31463_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9362 3 77 1.10.10.10
af_P52696_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9216 4 81 1.10.10.10
af_P77746_4_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9205 2 81 1.10.10.10
af_P0A9F6_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9193 4 81 1.10.10.10
af_P30979_21_108_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9192 3 81 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1H6VZ55-F1-model_v4 Regulatory helix-turn-helix protein, lysR family 0.9663 2 80 GO:0003700
AF-A0A1H6VZ55-F1-model_v4 Regulatory helix-turn-helix protein, lysR family 0.8897 2 80 GO:0003700
AF-A0A833KNX1-F1-model_v4 deleted 0.884 3 75
AF-A0A7G6RG65-F1-model_v4 deleted 0.8813 2 93
AF-A0A562C4G8-F1-model_v4 Anthranilate phosphoribosyltransferase 0.8682 5 88 GO:0003700
GO:0016757

Map