F295704

General Info

Members Datasets Scaffolds Average Seq Length
192 147 384 348

Family's Representative Sequence

Representative Sequence 3300020082|Ga0206353_12032500|Ga0206353_120325002
Length 371
Sequence MMLLRPLLLAAALIAAIPVPALAGANDAVPTPDWKSDSAAIAVPVLRASVTVTSDVVRIGDVIDNAGDFGQIAIYRAPDLGTTGTLPTAQVISALRAHQVIGVDTKNIKEVTVTRLARNLAAKDIQDAVAHAIEHRNGLGDAANLSLTFDRDVQDLHLDAANTGVMQPVAVRYDQRSTRFDVTFEIGNDVNAAPTRLRFTGSAIETVEAAVLTRNVERADMLKSSDIIVERRPKLEIGGDAAVRESALGMQMRHPMRAGQALRVADLTKPDLVQKDQGVTLVFQTAGLYLTTRGKAIDSGTEGDVVSVLNLQSKRTVTGVVTGRGQVTIQVATPRPVVITDPGIAQTPVPTSVADNSPQVTSNQVSTPRSE

Samples

Sample ID Description Type Environment
1 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
37 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
38 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
40 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
60 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
61 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
66 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
67 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
68 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
69 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
70 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
71 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
72 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
75 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
79 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
80 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
83 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
84 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
85 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
86 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
87 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
88 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
89 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
90 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
91 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
92 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
93 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
96 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
97 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
98 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
99 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
100 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
101 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
102 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
103 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
104 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
107 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
111 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
112 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
113 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
114 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
115 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
118 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
119 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
120 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
121 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
122 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
123 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
124 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
125 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
126 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
127 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
128 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
129 3300053115 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 endosphere Metagenome Endosphere
130 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
131 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
132 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
133 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
134 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
135 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
136 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
137 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
138 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
139 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
140 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
141 3300053737 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere Metagenome Endosphere
142 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
143 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule
144 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
145 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
146 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
147 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.88
Metatranscriptomes 0.52
Isolates 2.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.1
Nodule 2.6
Rhizoplane 4.17
Rhizosphere 64.58
Stem 0
Stem Tuber 0
Unclassified 0.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0206353_12032500 3300020082 Bacteria 1980
2 JGI25406J46586_10000461 3300003203 Bacteria 18989
3 Ga0070683_100016258 3300005329 Bacteria 6558
4 Ga0070683_100045523 3300005329 Bacteria 4049
5 Ga0070680_100109337 3300005336 Bacteria 2300
6 Ga0070674_100160985 3300005356 Bacteria 1703
7 Ga0070714_100160157 3300005435 Bacteria 2035
8 Ga0070713_100154114 3300005436 Bacteria 2046
9 Ga0070713_100277163 3300005436 Bacteria 1537
10 Ga0070710_10015832 3300005437 Bacteria 3824
11 Ga0070711_100015058 3300005439 Bacteria 4887
12 Ga0070711_100086449 3300005439 Bacteria 2248
13 Ga0070663_100092042 3300005455 Bacteria 2248
14 Ga0070663_100113215 3300005455 Bacteria 2041
15 Ga0070681_10173090 3300005458 Bacteria 2080
16 Ga0070681_10199664 3300005458 Bacteria 1918
17 Ga0070707_100210749 3300005468 Unclassified 1894
18 Ga0070684_100009414 3300005535 Bacteria 7692
19 Ga0070684_100029441 3300005535 Bacteria 4653
20 Ga0070697_100127802 3300005536 Bacteria 2129
21 Ga0068853_100229331 3300005539 Bacteria 1698
22 Ga0068855_100435306 3300005563 Bacteria 1433
23 Ga0068857_100402965 3300005577 Bacteria 1273
24 Ga0068854_100018967 3300005578 Bacteria 4626
25 Ga0068856_100000140 3300005614 Bacteria 73194
26 Ga0068861_100047014 3300005719 Bacteria 3256
27 Ga0068863_100080741 3300005841 Bacteria 3081
28 Ga0068860_100000161 3300005843 Bacteria 110123
29 Ga0081455_10012312 3300005937 Bacteria 8534
30 Ga0081455_10022371 3300005937 Bacteria 5909
31 Ga0081540_1008157 3300005983 Bacteria 7345
32 Ga0081540_1028032 3300005983 Bacteria 3174
33 Ga0081540_1037448 3300005983 Bacteria 2571
34 Ga0081539_10000319 3300005985 Bacteria 106944
35 Ga0070717_10082028 3300006028 Bacteria 2708
36 Ga0070712_100085743 3300006175 Bacteria 2293
37 Ga0075434_100113744 3300006871 Bacteria 2719
38 Ga0105240_10437078 3300009093 Bacteria 1467
39 Ga0105237_10279366 3300009545 Bacteria 1672
40 Ga0105237_10283237 3300009545 Bacteria 1660
41 Ga0105238_10238978 3300009551 Bacteria 1794
42 Ga0105249_10117581 3300009553 Bacteria 2522
43 Ga0105246_10094912 3300011119 Bacteria 2158
44 Ga0157369_10005835 3300013105 Bacteria 14316
45 Ga0157369_10066481 3300013105 Bacteria 3878
46 Ga0157369_10305315 3300013105 Bacteria 1655
47 Ga0157375_10148394 3300013308 Bacteria 2478
48 Ga0213875_10030601 3300021388 Bacteria 2548
49 Ga0213871_10016974 3300021441 Bacteria 1762
50 Ga0209677_100238 3300025253 Bacteria 38405
51 Ga0209233_1005863 3300025261 Bacteria 4031
52 Ga0207692_10030550 3300025898 Bacteria 2570
53 Ga0207710_10035076 3300025900 Bacteria 2206
54 Ga0207647_10104449 3300025904 Bacteria 1679
55 Ga0207699_10067479 3300025906 Bacteria 2175
56 Ga0207643_10121193 3300025908 Bacteria 1550
57 Ga0207643_10121982 3300025908 Bacteria 1545
58 Ga0207707_10127619 3300025912 Bacteria 2224
59 Ga0207707_10306792 3300025912 Bacteria 1372
60 Ga0207693_10065120 3300025915 Bacteria 2854
61 Ga0207652_10209917 3300025921 Bacteria 1753
62 Ga0207700_10028373 3300025928 Bacteria 3934
63 Ga0207700_10210547 3300025928 Bacteria 1643
64 Ga0207700_10248802 3300025928 Bacteria 1518
65 Ga0207664_10126410 3300025929 Bacteria 2147
66 Ga0207669_10013237 3300025937 Bacteria 4089
67 Ga0207669_10294697 3300025937 Bacteria 1230
68 Ga0207665_10102952 3300025939 Bacteria 1996
69 Ga0207691_10151138 3300025940 Bacteria 2041
70 Ga0207661_10010444 3300025944 Bacteria 6684
71 Ga0207661_10024856 3300025944 Bacteria 4546
72 Ga0207639_10120018 3300026041 Bacteria 2159
73 Ga0207678_10024105 3300026067 Bacteria 5316
74 Ga0207678_10210320 3300026067 Bacteria 1664
75 Ga0207702_10000261 3300026078 Bacteria 61023
76 Ga0207648_10174993 3300026089 Bacteria 1898
77 Ga0268264_10000096 3300028381 Bacteria 230188
78 Ga0265337_1021788 3300028556 Bacteria 1993
79 Ga0265323_10060798 3300028653 Bacteria 1314
80 Ga0265336_10001038 3300028666 Bacteria 13596
81 Ga0265338_10000746 3300028800 Bacteria 55415
82 Ga0307508_10229416 3300031616 Bacteria 1455
83 Ga0265314_10054438 3300031711 Bacteria 2769
84 Ga0315911_1000011 3300033442 Bacteria 264678
85 Ga0373926_0012638 3300035083 Bacteria 2856
86 Ga0373923_0001620 3300035111 Bacteria 6564
87 Ga0373936_0020557 3300035113 Bacteria 2565
88 Ga0373956_0047026 3300035119 Bacteria 1929
89 Ga0373943_0069068 3300035170 Bacteria 1785
90 Ga0373927_0113534 3300035695 Bacteria 1765
91 Ga0373947_0007698 3300035725 Bacteria 6225
92 Ga0373925_0050378 3300037068 Bacteria 3105
93 Ga0373925_0108497 3300037068 Bacteria 2142
94 Ga0395899_0101893 3300037312 Bacteria 2072
95 Ga0395898_0024216 3300037466 Bacteria 6124
96 Ga0436364_0963987 3300037853 Bacteria 2969
97 Ga0436365_0647133 3300039437 Bacteria 4526
98 Ga0436363_0126460 3300039450 Bacteria 1234
99 Ga0466966_0134733 3300044684 Bacteria 1511
100 Ga0466957_0099309 3300044842 Bacteria 1833
101 Ga0466959_0103526 3300045049 Bacteria 2036
102 Ga0466967_0009528 3300045976 Bacteria 7212
103 Ga0466967_0366496 3300045976 Bacteria 1397
104 Ga0466967_0516814 3300045976 Bacteria 1173
105 Ga0495592_0078990 3300046454 Bacteria 2382
106 Ga0495603_0016678 3300046455 Bacteria 4444
107 Ga0495603_0071098 3300046455 Bacteria 2045
108 Ga0495582_0016683 3300046473 Bacteria 4022
109 Ga0495639_0006788 3300046475 Bacteria 4922
110 Ga0495664_0013865 3300046477 Bacteria 4570
111 Ga0495594_0057862 3300046499 Bacteria 2141
112 Ga0495630_0099642 3300046517 Bacteria 2198
113 Ga0495652_0089787 3300046529 Bacteria 2515
114 Ga0495665_0015131 3300046531 Bacteria 4157
115 Ga0495640_0026529 3300046533 Bacteria 4185
116 Ga0495587_0066210 3300046536 Bacteria 2108
117 Ga0495645_0124365 3300046543 Bacteria 1813
118 Ga0495622_0018404 3300046557 Bacteria 3253
119 Ga0495634_0025219 3300046642 Bacteria 4165
120 Ga0495635_0034380 3300046663 Bacteria 3515
121 Ga0495599_0033784 3300046678 Bacteria 3215
122 Ga0495669_0020855 3300046684 Bacteria 2838
123 Ga0495581_0015619 3300047315 Bacteria 4406
124 Ga0495684_0052954 3300047471 Bacteria 3097
125 Ga0495593_0017715 3300047673 Bacteria 4010
126 Ga0496100_0098849 3300048903 Bacteria 2007
127 Ga0496101_0054755 3300048904 Bacteria 2880
128 Ga0496106_0005881 3300048909 Bacteria 9070
129 Ga0496109_0168451 3300048912 Bacteria 2054
130 Ga0496109_0182492 3300048912 Bacteria 1971
131 Ga0496111_0122706 3300048914 Bacteria 1919
132 Ga0496112_0374023 3300048915 Bacteria 1366
133 Ga0496113_0078336 3300048916 Bacteria 2528
134 Ga0496117_0006861 3300048920 Bacteria 11313
135 Ga0496117_0156864 3300048920 Bacteria 1339
136 Ga0496118_0093885 3300048921 Bacteria 2053
137 Ga0496121_0017836 3300048924 Bacteria 7208
138 Ga0496121_0033685 3300048924 Bacteria 4630
139 Ga0496121_0062518 3300048924 Bacteria 3048
140 Ga0496121_0106911 3300048924 Bacteria 2144
141 Ga0496121_0200140 3300048924 Bacteria 1424
142 Ga0496122_0040173 3300048925 Bacteria 3723
143 Ga0496122_0100430 3300048925 Bacteria 1936
144 Ga0496125_0000063 3300048928 Bacteria 250260
145 Ga0496125_0002684 3300048928 Bacteria 22676
146 Ga0496125_0030744 3300048928 Bacteria 4798
147 Ga0496126_0016251 3300048929 Bacteria 7450
148 Ga0496126_0017404 3300048929 Bacteria 7160
149 Ga0496126_0031256 3300048929 Bacteria 5033
150 Ga0496126_0031680 3300048929 Bacteria 4990
151 Ga0496126_0072425 3300048929 Bacteria 3065
152 Ga0496126_0137806 3300048929 Bacteria 2103
153 Ga0496126_0173937 3300048929 Bacteria 1833
154 Ga0501047_0100049 3300049581 Bacteria 2778
155 Ga0501070_0015204 3300049586 Bacteria 6479
156 Ga0501073_0020077 3300049589 Bacteria 4818
157 Ga0501080_0014403 3300049742 Bacteria 7283
158 Ga0501044_0086134 3300049823 Bacteria 3174
159 nmdc:mga0n895_67634_c1 3300050512 Bacteria 3538
160 Ga0495612_0005236 3300053078 Bacteria 5357
161 Ga0500635_0008610 3300053080 Bacteria 2803
162 Ga0500647_0020830 3300053091 Bacteria 3055
163 Ga0500566_0004008 3300053094 Bacteria 8787
164 Ga0500566_0004641 3300053094 Bacteria 8172
165 Ga0500640_025704 3300053095 Bacteria 2562
166 Ga0500554_000726 3300053102 Bacteria 6657
167 Ga0500554_018959 3300053102 Bacteria 1866
168 Ga0500572_007013 3300053111 Bacteria 2597
169 Ga0500591_065679 3300053115 Bacteria 1659
170 Ga0500608_029011 3300053122 Bacteria 2614
171 Ga0500614_001218 3300053123 Bacteria 6263
172 Ga0500559_0007362 3300053136 Bacteria 4881
173 Ga0500559_0021987 3300053136 Bacteria 2705
174 Ga0500573_0023333 3300053140 Bacteria 3552
175 Ga0500603_001051 3300053150 Bacteria 6492
176 Ga0500603_007135 3300053150 Bacteria 2448
177 Ga0500630_117281 3300053159 Bacteria 1185
178 Ga0500638_002099 3300053162 Bacteria 6759
179 Ga0500638_025333 3300053162 Bacteria 2836
180 Ga0500638_060199 3300053162 Bacteria 1826
181 Ga0500639_098605 3300053163 Bacteria 1442
182 Ga0500636_0193547 3300053177 Bacteria 1081
183 Ga0500637_0000107 3300053178 Bacteria 29902
184 Ga0500637_0000325 3300053178 Bacteria 17915
185 Ga0500552_001671 3300053733 Bacteria 2119
186 Ga0500601_002843 3300053737 Bacteria 1864
187 Ga0500661_002117 3300055283 Bacteria 3750
188 2513891928 2513237141 Bacteria 8496279
189 2513922315 2513237145 Bacteria 8979722
190 2524469803 2524023210 Bacteria 9029266
191 2885386004 2885383462 Bacteria 9473874
192 8056685263 8056681323 Bacteria 8472857
193 Ga0206353_12032500
194 JGI25406J46586_10000461
195 Ga0070683_100016258
196 Ga0070683_100045523
197 Ga0070680_100109337
198 Ga0070674_100160985
199 Ga0070714_100160157
200 Ga0070713_100154114
201 Ga0070713_100277163
202 Ga0070710_10015832
203 Ga0070711_100015058
204 Ga0070711_100086449
205 Ga0070663_100092042
206 Ga0070663_100113215
207 Ga0070681_10173090
208 Ga0070681_10199664
209 Ga0070707_100210749
210 Ga0070684_100009414
211 Ga0070684_100029441
212 Ga0070697_100127802
213 Ga0068853_100229331
214 Ga0068855_100435306
215 Ga0068857_100402965
216 Ga0068854_100018967
217 Ga0068856_100000140
218 Ga0068861_100047014
219 Ga0068863_100080741
220 Ga0068860_100000161
221 Ga0081455_10012312
222 Ga0081455_10022371
223 Ga0081540_1008157
224 Ga0081540_1028032
225 Ga0081540_1037448
226 Ga0081539_10000319
227 Ga0070717_10082028
228 Ga0070712_100085743
229 Ga0075434_100113744
230 Ga0105240_10437078
231 Ga0105237_10279366
232 Ga0105237_10283237
233 Ga0105238_10238978
234 Ga0105249_10117581
235 Ga0105246_10094912
236 Ga0157369_10005835
237 Ga0157369_10066481
238 Ga0157369_10305315
239 Ga0157375_10148394
240 Ga0213875_10030601
241 Ga0213871_10016974
242 Ga0209677_100238
243 Ga0209233_1005863
244 Ga0207692_10030550
245 Ga0207710_10035076
246 Ga0207647_10104449
247 Ga0207699_10067479
248 Ga0207643_10121193
249 Ga0207643_10121982
250 Ga0207707_10127619
251 Ga0207707_10306792
252 Ga0207693_10065120
253 Ga0207652_10209917
254 Ga0207700_10028373
255 Ga0207700_10210547
256 Ga0207700_10248802
257 Ga0207664_10126410
258 Ga0207669_10013237
259 Ga0207669_10294697
260 Ga0207665_10102952
261 Ga0207691_10151138
262 Ga0207661_10010444
263 Ga0207661_10024856
264 Ga0207639_10120018
265 Ga0207678_10024105
266 Ga0207678_10210320
267 Ga0207702_10000261
268 Ga0207648_10174993
269 Ga0268264_10000096
270 Ga0265337_1021788
271 Ga0265323_10060798
272 Ga0265336_10001038
273 Ga0265338_10000746
274 Ga0307508_10229416
275 Ga0265314_10054438
276 Ga0315911_1000011
277 Ga0373926_0012638
278 Ga0373923_0001620
279 Ga0373936_0020557
280 Ga0373956_0047026
281 Ga0373943_0069068
282 Ga0373927_0113534
283 Ga0373947_0007698
284 Ga0373925_0050378
285 Ga0373925_0108497
286 Ga0395899_0101893
287 Ga0395898_0024216
288 Ga0436364_0963987
289 Ga0436365_0647133
290 Ga0436363_0126460
291 Ga0466966_0134733
292 Ga0466957_0099309
293 Ga0466959_0103526
294 Ga0466967_0009528
295 Ga0466967_0366496
296 Ga0466967_0516814
297 Ga0495592_0078990
298 Ga0495603_0016678
299 Ga0495603_0071098
300 Ga0495582_0016683
301 Ga0495639_0006788
302 Ga0495664_0013865
303 Ga0495594_0057862
304 Ga0495630_0099642
305 Ga0495652_0089787
306 Ga0495665_0015131
307 Ga0495640_0026529
308 Ga0495587_0066210
309 Ga0495645_0124365
310 Ga0495622_0018404
311 Ga0495634_0025219
312 Ga0495635_0034380
313 Ga0495599_0033784
314 Ga0495669_0020855
315 Ga0495581_0015619
316 Ga0495684_0052954
317 Ga0495593_0017715
318 Ga0496100_0098849
319 Ga0496101_0054755
320 Ga0496106_0005881
321 Ga0496109_0168451
322 Ga0496109_0182492
323 Ga0496111_0122706
324 Ga0496112_0374023
325 Ga0496113_0078336
326 Ga0496117_0006861
327 Ga0496117_0156864
328 Ga0496118_0093885
329 Ga0496121_0017836
330 Ga0496121_0033685
331 Ga0496121_0062518
332 Ga0496121_0106911
333 Ga0496121_0200140
334 Ga0496122_0040173
335 Ga0496122_0100430
336 Ga0496125_0000063
337 Ga0496125_0002684
338 Ga0496125_0030744
339 Ga0496126_0016251
340 Ga0496126_0017404
341 Ga0496126_0031256
342 Ga0496126_0031680
343 Ga0496126_0072425
344 Ga0496126_0137806
345 Ga0496126_0173937
346 Ga0501047_0100049
347 Ga0501070_0015204
348 Ga0501073_0020077
349 Ga0501080_0014403
350 Ga0501044_0086134
351 nmdc:mga0n895_67634_c1
352 Ga0495612_0005236
353 Ga0500635_0008610
354 Ga0500647_0020830
355 Ga0500566_0004008
356 Ga0500566_0004641
357 Ga0500640_025704
358 Ga0500554_000726
359 Ga0500554_018959
360 Ga0500572_007013
361 Ga0500591_065679
362 Ga0500608_029011
363 Ga0500614_001218
364 Ga0500559_0007362
365 Ga0500559_0021987
366 Ga0500573_0023333
367 Ga0500603_001051
368 Ga0500603_007135
369 Ga0500630_117281
370 Ga0500638_002099
371 Ga0500638_025333
372 Ga0500638_060199
373 Ga0500639_098605
374 Ga0500636_0193547
375 Ga0500637_0000107
376 Ga0500637_0000325
377 Ga0500552_001671
378 Ga0500601_002843
379 Ga0500661_002117
380 2513891928
381 2513922315
382 2524469803
383 2885386004
384 8056685263

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13144

ChapFlgA

Chaperone for flagella basal body P-ring formation

207

329

0.97

PF08666

SAF

SAF domain

207

268

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ipj-assembly1.cif.gz_A-2 crystal structure of r314k n-acetyl neuraminic acid synthase from neiserria meningitidis with malate bound 0.8362 192 251
4ny6-assembly1.cif.gz_A neutron structure of leucine and valine methyl protonated type iii antifreeze 0.8332 192 251
1jab-assembly1.cif.gz_A type iii antifreeze protein isoform hplc 12 t18s 0.8327 192 251
3ame-assembly1.cif.gz_A type iii antifreeze protein isoform hplc 12 q9tq44t 0.8295 192 251
6ppw-assembly1.cif.gz_A crystal structure of neub, an n-acetylneuraminate synthase from neisseria meningitidis, in complex with magnesium and malate 0.8242 192 251
ID Description Score Start End Superfamily
3frnA02 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.9331 189 254 3.90.1210.10
3vjpB02 Mainly Beta;Roll;SH3 type barrels.; 0.8953 256 315 2.30.30.760
3frnA02 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.8946 189 254 3.90.1210.10
3teeA02 Mainly Beta;Roll;SH3 type barrels.; 0.8935 255 318 2.30.30.760
3frnA03 Mainly Beta;Roll;SH3 type barrels.; 0.8932 257 313 2.30.30.760
ID Description Score Start End GO Terms
AF-A0A1F3A0B5-F1-model_v4 Flagella basal body P-ring formation protein FlgA 0.9986 254 313 GO:0042597
GO:0044780
AF-A0A349EDK2-F1-model_v4 Flagella basal body P-ring formation protein FlgA 0.9871 257 314 GO:0042597
GO:0044780
AF-A0A4Q3L185-F1-model_v4 Flagella basal body P-ring formation protein FlgA C-terminal domain-containing protein 0.984 257 314 GO:0044780
AF-A0A438VK62-F1-model_v4 Flagella basal body P-ring formation protein FlgA 0.9756 255 313 GO:0042597
GO:0044780
AF-A0A645I5P2-F1-model_v4 Flagella basal body P-ring formation protein FlgA C-terminal domain-containing protein 0.9628 255 315 GO:0044780

Map