F294830

General Info

Members Datasets Scaffolds Average Seq Length
191 169 382 312

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221587|2643947397
Length 347
Sequence PATVPDGGSADGPVSAGDPGRAPAQSLVSVDGLVVALDIGGTKIAGALVDAGGRIRVRAQRPTPARGDGETVMRAVDDVLTELSGSPLWAAAGAVGIGSAGPVDAHRGTVSPVNIPGWRDFPLVERVHRATGGRPVTLVGDGVAMTAAEHWLGAARGHDNALCLVVSTGVGGGLVLGGRLHPGPTGNAGHIGHIVVDMDGDPCACGGRGCVERVASGPHLARRALDNGWRPGPDGDVSAAAVAAAAHAGDPVAVAGFARAAQALAAGIAATAALVEIDIAVVGGGVAGAGEVLFAPLRRALADYATLSFVKDLTVVAAVTGTDAGLLGAAAAAGAAHGGESWAGRAS

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
3 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
4 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
5 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
6 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
7 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
8 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
9 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
10 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
11 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
12 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
13 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
14 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
15 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
16 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
17 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
18 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
19 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
20 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
21 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
22 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
23 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
24 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
25 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
26 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
27 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
28 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
29 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
30 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
31 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
32 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
33 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
34 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
35 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
36 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
37 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
38 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
39 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
40 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
41 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
42 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
43 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
44 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
45 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
46 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
47 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
48 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
49 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
50 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
51 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
52 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
53 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
54 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
55 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
56 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
57 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
58 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
59 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
60 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
61 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
62 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
63 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
64 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
65 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
77 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
79 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
80 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
81 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
82 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
83 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
84 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
85 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
86 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
87 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
88 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
89 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
90 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
91 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
92 2643221548 Streptomyces sp. Root55 Isolate Unclassified
93 2643221647 Streptomyces sp. Root369 Isolate Unclassified
94 2643221670 Streptomyces sp. Root431 Isolate Unclassified
95 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
96 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
97 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
98 2643221714 Streptomyces sp. Root264 Isolate Unclassified
99 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
100 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
101 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
102 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
103 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
104 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
105 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
106 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
107 2808606448 Streptomyces sp. 193411 Isolate Unclassified
108 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
109 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
110 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
111 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
112 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
113 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
114 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
115 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
116 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
117 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
118 2862574272 Streptomyces sp. AcE210 Isolate Nodule
119 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
120 2867369537 Streptomyces sp. Z26 Isolate Unclassified
121 2867428634 Streptomyces sp. RP5T Isolate Unclassified
122 2867475112 Streptomyces sp. TM32 Isolate Unclassified
123 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
124 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
125 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
126 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
127 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
128 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
129 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
130 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
131 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
132 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
133 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
134 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
135 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
136 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
137 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
138 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
139 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
140 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
141 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
142 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
143 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
144 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
145 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
146 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
147 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
148 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
149 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
150 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
151 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
152 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
153 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
154 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
155 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
156 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
157 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
158 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
159 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
160 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
161 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
162 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
163 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
164 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
165 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
166 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
167 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
168 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
169 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 56.02
Metatranscriptomes 0
Isolates 43.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.85
Nodule 1.57
Rhizoplane 0.52
Rhizosphere 67.54
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10086488 3300003316 Bacteria 7015
2 JGI25160J50197_1021167 3300003354 Bacteria 1941
3 Ga0068856_100053567 3300005614 Bacteria 3978
4 Ga0075368_10008315 3300006042 Bacteria 3689
5 Ga0075367_10001560 3300006178 Bacteria 9905
6 Ga0182008_10003063 3300014497 Bacteria 10267
7 Ga0182007_10005269 3300015262 Bacteria 5708
8 Ga0213875_10003149 3300021388 Bacteria 9487
9 Ga0209758_1001840 3300025297 Bacteria 23288
10 Ga0207426_1002119 3300025302 Bacteria 13611
11 Ga0207426_1002620 3300025302 Bacteria 11149
12 Ga0207426_1020982 3300025302 Bacteria 2263
13 Ga0207702_10253250 3300026078 Bacteria 1654
14 Ga0209813_10009131 3300027866 Bacteria 2526
15 Ga0307511_10000474 3300030521 Bacteria 43520
16 Ga0307513_10042290 3300031456 Bacteria 5019
17 Ga0307509_10010889 3300031507 Bacteria 11090
18 Ga0307508_10003079 3300031616 Bacteria 17145
19 Ga0307508_10097341 3300031616 Bacteria 2534
20 Ga0307516_10046344 3300031730 Bacteria 4290
21 Ga0307510_10065420 3300033180 Bacteria 3682
22 Ga0395900_0354917 3300037418 Bacteria 1439
23 Ga0395898_0001876 3300037466 Bacteria 26857
24 Ga0436364_0656793 3300037853 Bacteria 14929
25 Ga0439442_007908 3300042002 Bacteria 2146
26 Ga0439449_0000837 3300042007 Bacteria 11921
27 Ga0439457_000842 3300042014 Bacteria 9209
28 Ga0450890_005974 3300042127 Bacteria 1565
29 Ga0466972_0006452 3300044658 Bacteria 5892
30 Ga0466966_0007761 3300044684 Bacteria 7107
31 Ga0466961_0030886 3300044693 Bacteria 3443
32 Ga0466970_0005435 3300044765 Bacteria 6323
33 Ga0466959_0074152 3300045049 Bacteria 2461
34 Ga0495592_0050859 3300046454 Bacteria 3078
35 Ga0495603_0016980 3300046455 Bacteria 4404
36 Ga0495629_0034189 3300046459 Bacteria 3594
37 Ga0495629_0068454 3300046459 Bacteria 2477
38 Ga0495629_0084179 3300046459 Bacteria 2219
39 Ga0495651_0074861 3300046462 Bacteria 2568
40 Ga0495605_0019500 3300046474 Bacteria 3621
41 Ga0495662_0043822 3300046476 Bacteria 2160
42 Ga0495585_0054482 3300046492 Bacteria 2211
43 Ga0495594_0040674 3300046499 Bacteria 2545
44 Ga0495607_0062362 3300046501 Bacteria 2113
45 Ga0495606_0011833 3300046507 Bacteria 7065
46 Ga0495608_0125761 3300046511 Bacteria 1642
47 Ga0495610_0019177 3300046512 Bacteria 3835
48 Ga0495620_0010533 3300046515 Bacteria 4873
49 Ga0495628_0028228 3300046516 Bacteria 4561
50 Ga0495628_0112480 3300046516 Bacteria 2093
51 Ga0495637_0036687 3300046520 Bacteria 2133
52 Ga0495666_0009676 3300046526 Bacteria 4818
53 Ga0495652_0091362 3300046529 Bacteria 2489
54 Ga0495640_0022189 3300046533 Bacteria 4645
55 Ga0495640_0028946 3300046533 Bacteria 3983
56 Ga0495609_0067987 3300046538 Bacteria 1568
57 Ga0495622_0177246 3300046557 Bacteria 957
58 Ga0495588_0005629 3300046674 Bacteria 5583
59 Ga0495657_0004368 3300046675 Bacteria 11285
60 Ga0495646_0078374 3300046680 Bacteria 1931
61 Ga0495613_0007218 3300046689 Bacteria 8274
62 Ga0495613_0035261 3300046689 Bacteria 3713
63 Ga0495613_0088585 3300046689 Bacteria 2243
64 Ga0495624_0048975 3300046690 Bacteria 2680
65 Ga0495671_0052329 3300046692 Bacteria 2030
66 Ga0495589_0094524 3300046794 Bacteria 1450
67 Ga0495660_0037638 3300046810 Bacteria 2694
68 Ga0495676_0021952 3300047321 Bacteria 5563
69 Ga0495676_0041292 3300047321 Bacteria 3798
70 Ga0495676_0050849 3300047321 Bacteria 3320
71 Ga0495676_0096921 3300047321 Bacteria 2191
72 Ga0495676_0303783 3300047321 Bacteria 1075
73 Ga0495683_0054994 3300047323 Bacteria 1982
74 Ga0495687_011803 3300047443 Bacteria 4665
75 Ga0495687_017317 3300047443 Bacteria 3598
76 Ga0495685_002389 3300047447 Bacteria 5875
77 Ga0495685_005838 3300047447 Bacteria 4021
78 Ga0495685_081755 3300047447 Bacteria 1075
79 Ga0495681_0025826 3300047470 Bacteria 3069
80 Ga0495615_0037932 3300048090 Bacteria 1189
81 Ga0501032_0003157 3300049569 Bacteria 12676
82 Ga0501033_0015372 3300049570 Bacteria 5807
83 Ga0501033_0037480 3300049570 Bacteria 3628
84 Ga0501034_0011486 3300049571 Bacteria 9179
85 Ga0501036_0011412 3300049572 Bacteria 7354
86 Ga0501036_0037374 3300049572 Bacteria 4108
87 Ga0501037_0027056 3300049573 Bacteria 4237
88 Ga0501037_0137589 3300049573 Bacteria 1749
89 Ga0501038_0046481 3300049574 Bacteria 3764
90 Ga0501039_0049765 3300049575 Bacteria 3241
91 Ga0501042_0009646 3300049578 Bacteria 6445
92 Ga0501043_0006156 3300049579 Bacteria 9638
93 Ga0501043_0075037 3300049579 Bacteria 2656
94 Ga0501046_0052651 3300049580 Bacteria 3208
95 Ga0501047_0001051 3300049581 Bacteria 27524
96 Ga0501047_0001575 3300049581 Bacteria 22284
97 Ga0501070_0103470 3300049586 Bacteria 2355
98 Ga0501035_0014640 3300049822 Bacteria 7242
99 Ga0501044_0003842 3300049823 Bacteria 16854
100 Ga0501044_0010386 3300049823 Bacteria 10101
101 nmdc:mga06z11_805_c1 3300050494 Bacteria 11453
102 nmdc:mga04h51_10716_c1 3300050495 Bacteria 2525
103 Ga0500660_049436 3300053100 Bacteria 2090
104 Ga0500553_030985 3300053101 Bacteria 2670
105 Ga0500561_0004253 3300053137 Bacteria 2569
106 Ga0500603_013742 3300053150 Bacteria 1882
107 Ga0500633_0005146 3300053160 Bacteria 3076
108 2643947397 2643221587 Bacteria 7586415
109 2554259918 2554235005 Bacteria 6457341
110 2585300653 2582581312 Bacteria 7308206
111 2585320022 2582581314 Bacteria 11452267
112 2616693312 2616644814 Bacteria 11555299
113 2616901544 2616644941 Bacteria 8510691
114 2643764251 2643221548 Bacteria 8053412
115 2644263326 2643221647 Bacteria 10741251
116 2644386164 2643221670 Bacteria 6497041
117 2644433132 2643221677 Bacteria 7584031
118 2644442053 2643221678 Bacteria 9540101
119 2644458689 2643221682 Bacteria 6743283
120 2644631650 2643221714 Bacteria 9015452
121 2784586331 2784132148 Bacteria 8627943
122 2785346478 2784746763 Bacteria 9783172
123 2785366580 2784746768 Bacteria 10036182
124 2786667660 2786546132 Bacteria 10419719
125 2793975982 2791355406 Bacteria 11364898
126 2804849337 2802429296 Bacteria 7227771
127 2808847121 2808606359 Bacteria 9866990
128 2808917929 2808606375 Bacteria 9466072
129 2809229831 2808606448 Bacteria 8656184
130 2811846666 2808606982 Bacteria 7791042
131 2812360841 2811994879 Bacteria 9313447
132 2812482761 2811994917 Bacteria 7761064
133 2819698591 2818991463 Bacteria 7948711
134 2852639427 2852635781 Bacteria 8251373
135 2862181222 2862178590 Bacteria 8583590
136 2862290181 2862281513 Bacteria 9621493
137 2862291993 2862290372 Bacteria 7471434
138 2862391911 2862382967 Bacteria 10317375
139 2862514783 2862507626 Bacteria 9425308
140 2862580448 2862574272 Bacteria 10567477
141 2863408069 2863404153 Bacteria 9672205
142 2867375160 2867369537 Bacteria 6501581
143 2867434900 2867428634 Bacteria 9590268
144 2867478001 2867475112 Bacteria 6909112
145 2873157957 2873151551 Bacteria 8625867
146 2875392289 2875391855 Bacteria 7600475
147 2877683968 2877676314 Bacteria 9512378
148 2912723159 2912715099 Bacteria 9460473
149 2912726620 2912723979 Bacteria 8557534
150 2912758394 2912757875 Bacteria 7940295
151 2918502145 2918501144 Bacteria 8668083
152 2919470012 2919468124 Bacteria 9133025
153 2935393478 2935390628 Bacteria 7043367
154 2946065029 2946064051 Bacteria 8957905
155 2946073463 2946072368 Bacteria 8999607
156 2954008377 2954002825 Bacteria 9173742
157 2954389266 2954380949 Bacteria 10050426
158 2954673799 2954673503 Bacteria 9685905
159 2954690191 2954682443 Bacteria 9862841
160 2954700042 2954691527 Bacteria 10720516
161 2954702177 2954701450 Bacteria 10834262
162 2954718867 2954711539 Bacteria 10867210
163 2954728837 2954721474 Bacteria 10456478
164 2954732975 2954731030 Bacteria 10243860
165 2954747736 2954740390 Bacteria 10229294
166 2954751855 2954749733 Bacteria 10366972
167 2954766858 2954759201 Bacteria 9358192
168 2966604832 2966598605 Bacteria 7676064
169 2990060208 2990059506 Bacteria 9321252
170 2997453889 2997451912 Bacteria 8492419
171 2997605863 2997600082 Bacteria 9896405
172 3006428492 3006425503 Bacteria 6491253
173 3006493792 3006486233 Bacteria 8157040
174 3006496945 3006493962 Bacteria 8825450
175 8008560612 8008558824 Bacteria 10610750
176 8008581176 8008574985 Bacteria 7815457
177 8023624454 8023623736 Bacteria 8593882
178 8025415991 8025413630 Bacteria 7014048
179 8025478461 8025478263 Bacteria 8209203
180 8025534934 8025530807 Bacteria 8495698
181 8047901075 8047893842 Bacteria 11723082
182 8048133843 8048127548 Bacteria 11053136
183 8048357826 8048356638 Bacteria 11044339
184 8048378014 8048369669 Bacteria 11666822
185 8048387112 8048379754 Bacteria 11877923
186 8048407262 8048406513 Bacteria 8936924
187 8054165716 8054160619 Bacteria 7783213
188 8055066724 8055066027 Bacteria 9479577
189 8055178083 8055172936 Bacteria 9305943
190 8056670010 8056667051 Bacteria 6953971
191 8056832771 8056829672 Bacteria 9045328
192 rootH1_10086488
193 JGI25160J50197_1021167
194 Ga0068856_100053567
195 Ga0075368_10008315
196 Ga0075367_10001560
197 Ga0182008_10003063
198 Ga0182007_10005269
199 Ga0213875_10003149
200 Ga0209758_1001840
201 Ga0207426_1002119
202 Ga0207426_1002620
203 Ga0207426_1020982
204 Ga0207702_10253250
205 Ga0209813_10009131
206 Ga0307511_10000474
207 Ga0307513_10042290
208 Ga0307509_10010889
209 Ga0307508_10003079
210 Ga0307508_10097341
211 Ga0307516_10046344
212 Ga0307510_10065420
213 Ga0395900_0354917
214 Ga0395898_0001876
215 Ga0436364_0656793
216 Ga0439442_007908
217 Ga0439449_0000837
218 Ga0439457_000842
219 Ga0450890_005974
220 Ga0466972_0006452
221 Ga0466966_0007761
222 Ga0466961_0030886
223 Ga0466970_0005435
224 Ga0466959_0074152
225 Ga0495592_0050859
226 Ga0495603_0016980
227 Ga0495629_0034189
228 Ga0495629_0068454
229 Ga0495629_0084179
230 Ga0495651_0074861
231 Ga0495605_0019500
232 Ga0495662_0043822
233 Ga0495585_0054482
234 Ga0495594_0040674
235 Ga0495607_0062362
236 Ga0495606_0011833
237 Ga0495608_0125761
238 Ga0495610_0019177
239 Ga0495620_0010533
240 Ga0495628_0028228
241 Ga0495628_0112480
242 Ga0495637_0036687
243 Ga0495666_0009676
244 Ga0495652_0091362
245 Ga0495640_0022189
246 Ga0495640_0028946
247 Ga0495609_0067987
248 Ga0495622_0177246
249 Ga0495588_0005629
250 Ga0495657_0004368
251 Ga0495646_0078374
252 Ga0495613_0007218
253 Ga0495613_0035261
254 Ga0495613_0088585
255 Ga0495624_0048975
256 Ga0495671_0052329
257 Ga0495589_0094524
258 Ga0495660_0037638
259 Ga0495676_0021952
260 Ga0495676_0041292
261 Ga0495676_0050849
262 Ga0495676_0096921
263 Ga0495676_0303783
264 Ga0495683_0054994
265 Ga0495687_011803
266 Ga0495687_017317
267 Ga0495685_002389
268 Ga0495685_005838
269 Ga0495685_081755
270 Ga0495681_0025826
271 Ga0495615_0037932
272 Ga0501032_0003157
273 Ga0501033_0015372
274 Ga0501033_0037480
275 Ga0501034_0011486
276 Ga0501036_0011412
277 Ga0501036_0037374
278 Ga0501037_0027056
279 Ga0501037_0137589
280 Ga0501038_0046481
281 Ga0501039_0049765
282 Ga0501042_0009646
283 Ga0501043_0006156
284 Ga0501043_0075037
285 Ga0501046_0052651
286 Ga0501047_0001051
287 Ga0501047_0001575
288 Ga0501070_0103470
289 Ga0501035_0014640
290 Ga0501044_0003842
291 Ga0501044_0010386
292 nmdc:mga06z11_805_c1
293 nmdc:mga04h51_10716_c1
294 Ga0500660_049436
295 Ga0500553_030985
296 Ga0500561_0004253
297 Ga0500603_013742
298 Ga0500633_0005146
299 2643947397
300 2554259918
301 2585300653
302 2585320022
303 2616693312
304 2616901544
305 2643764251
306 2644263326
307 2644386164
308 2644433132
309 2644442053
310 2644458689
311 2644631650
312 2784586331
313 2785346478
314 2785366580
315 2786667660
316 2793975982
317 2804849337
318 2808847121
319 2808917929
320 2809229831
321 2811846666
322 2812360841
323 2812482761
324 2819698591
325 2852639427
326 2862181222
327 2862290181
328 2862291993
329 2862391911
330 2862514783
331 2862580448
332 2863408069
333 2867375160
334 2867434900
335 2867478001
336 2873157957
337 2875392289
338 2877683968
339 2912723159
340 2912726620
341 2912758394
342 2918502145
343 2919470012
344 2935393478
345 2946065029
346 2946073463
347 2954008377
348 2954389266
349 2954673799
350 2954690191
351 2954700042
352 2954702177
353 2954718867
354 2954728837
355 2954732975
356 2954747736
357 2954751855
358 2954766858
359 2966604832
360 2990060208
361 2997453889
362 2997605863
363 3006428492
364 3006493792
365 3006496945
366 8008560612
367 8008581176
368 8023624454
369 8025415991
370 8025478461
371 8025534934
372 8047901075
373 8048133843
374 8048357826
375 8048378014
376 8048387112
377 8048407262
378 8054165716
379 8055066724
380 8055178083
381 8056670010
382 8056832771

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00480

ROK

ROK family

34

336

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5f7r-assembly1.cif.gz_A rok repressor lmo0178 from listeria monocytogenes bound to inducer 0.8539 5 294
5f7r-assembly1.cif.gz_E rok repressor lmo0178 from listeria monocytogenes bound to inducer 0.8398 5 294
6jdc-assembly1.cif.gz_A-2 crystal structure of n-acetyl mannosmaine kinase in complex with mannac from haemophilus influenzae 0.8368 5 294
5f7q-assembly1.cif.gz_C rok repressor lmo0178 from listeria monocytogenes bound to operator 0.8347 5 294
5f7q-assembly1.cif.gz_J rok repressor lmo0178 from listeria monocytogenes bound to operator 0.831 5 294
ID Description Score Start End Superfamily
af_I6Y8D3_1_125_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9464 5 129 3.30.420.40
af_I6Y8D3_1_125_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9319 5 129 3.30.420.40
af_I6Y8D3_1_106_1.10.3290.10 Mainly Alpha;Orthogonal Bundle;Fic-like fold;Fido-like domain 0.9312 5 110 1.10.3290.10
af_I6Y8D3_1_106_1.10.3290.10 Mainly Alpha;Orthogonal Bundle;Fic-like fold;Fido-like domain 0.9147 5 110 1.10.3290.10
3vovB01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.8993 5 129 3.30.420.40
ID Description Score Start End GO Terms
AF-B5I6D4-F1-model_v4 ROK-family transcriptional regulator 0.962 2 172
AF-A0A2V0N886-F1-model_v4 ROK family protein 0.9362 5 161
AF-A0A537JS24-F1-model_v4 ROK family protein 0.9311 1 171 GO:0003824
AF-A0A7Z6T3E9-F1-model_v4 ROK-family transcriptional regulator 0.9131 1 249
AF-A0A853A1T9-F1-model_v4 Glucokinase (EC 2.7.1.2) 0.9121 2 300 GO:0016301

Map