F293831

General Info

Members Datasets Scaffolds Average Seq Length
191 152 382 457

Family's Representative Sequence

Representative Sequence 3300006186|Ga0075369_10034562|Ga0075369_100345622
Length 493
Sequence MDNSIAPTPAGKRGLNSSVILTDRLCEKRVAKRTKLYDRKCPGLYVSITTAGVATFSFKFTDRQTGKQRTGWLGVYNPETFTIEDARSKVYGLKAMGGDALAETFRDQKAAKTKRGKTVAEIIDERVVWMKTLVKKPDGEMRPRLESWENTASYLDRFVRPRLGQKLAMEVTKHDIATLSNDIVAGKFGKPSVSNARHMRKAASGLFNWAAEAGRDYVTASPCVNLPKLDPEHPRTRVLSEDEIKTFWHGLDRNDLPYDRRTRLALKFELVTMLRSRELLGAHRDELFDLDGDHPRFDVPLKRVKKRRVIQQPLSELAVEIIKEALTSDDQQFVFESPMYKGQPIHRKAMADALRGTKHEKNKDKTKTAGLCELLGLKPFTPHDLRRTAATLAGDLGFDDAWIAKCLDHAASRKTEQIVPTVTGKVYNHSKRIREKRAVLDGIAVELRRIIGMPATICGSWHEAAILPGHRRSLRLHRRRARDVLGIRSDELG

Samples

Sample ID Description Type Environment
1 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
2 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
3 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
4 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
5 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
6 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
7 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
8 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
9 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
10 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
11 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
12 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
13 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
14 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
15 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
16 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
17 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
18 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
19 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
20 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
21 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
22 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
23 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
24 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
32 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
33 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
34 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
35 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
36 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
37 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
38 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
39 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
40 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
41 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
42 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
43 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
44 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
45 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
46 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
47 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
48 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
49 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
50 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
51 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
52 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
53 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
54 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
55 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
56 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
57 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
58 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
59 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
60 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
61 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
62 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
63 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
64 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
65 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
66 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
67 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
68 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
69 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
70 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
71 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
72 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
73 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
74 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
75 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
76 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
77 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
78 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
79 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
80 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
81 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
82 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
83 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
84 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
85 2513237095 Bradyrhizobium diazoefficiens USDA 122 Isolate Nodule
86 2513237139 Bradyrhizobium ottawaense USDA 4 Isolate Nodule
87 2517093001 Bradyrhizobium japonicum USDA 124 Isolate Nodule
88 2524023205 Bradyrhizobium sp. Cp5.3 Isolate Nodule
89 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
90 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
91 2528768022 Bradyrhizobium japonicum USDA 123 Isolate Nodule
92 2617270735 Bradyrhizobium shewense ERR11 Isolate Nodule
93 2617270741 Bradyrhizobium yuanmingense CCBAU 10071 Isolate Nodule
94 2802429603 Bradyrhizobium ottawaense L2 Isolate Nodule
95 2816332527 Bradyrhizobium diazoefficiens Y21 Isolate Nodule
96 2824661429 Bradyrhizobium sp. HAMBI 2115 Isolate Unclassified
97 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
98 2824746037 Bradyrhizobium sp. HAMBI 2299 Isolate Unclassified
99 2838122688 Bradyrhizobium sp. CIR3A Isolate Nodule
100 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
101 2841983080 Bradyrhizobium sp. IAR9 Isolate Nodule
102 2847930680 Bradyrhizobium zhanjiangense CCBAU 51778 Isolate Unclassified
103 2874620515 Bradyrhizobium nanningense CCBAU 53390 Isolate Unclassified
104 2874645413 Bradyrhizobium canariense UBMA122 Isolate Nodule
105 2879099564 Bradyrhizobium japonicum UBMA197 Isolate Nodule
106 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
107 2888419890 Bradyrhizobium sp. 1(2017) 63S1MB Isolate Unclassified
108 2904666416 Bradyrhizobium nanningense CCBAU 51757 Isolate Unclassified
109 2904699407
110 2906626472 Bradyrhizobium hipponense aSej3 Isolate Unclassified
111 2906643746 Bradyrhizobium genosp. SA-3 Rp7b Isolate Unclassified
112 2908775508 Bradyrhizobium sp. SUTN9-2 Isolate Unclassified
113 2922368715
114 2922393267 Bradyrhizobium sp. WBAH10 Isolate Nodule
115 2922425934
116 2932784394 Bradyrhizobium sp. S3.2.12 Isolate Nodule
117 2932818245 Bradyrhizobium sp. S3.9.1 Isolate Nodule
118 2935608549 Bradyrhizobium sp. RT6a Isolate Nodule
119 2935616580 Bradyrhizobium sp. RT7a Isolate Nodule
120 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
121 2935648319 Bradyrhizobium sp. JR4.3 Isolate Nodule
122 2935656913 Bradyrhizobium sp. JR5.3 Isolate Nodule
123 2935665750 Bradyrhizobium sp. JR7.2 Isolate Nodule
124 2935675223 Bradyrhizobium sp. LA2.1 Isolate Nodule
125 2935819856 Bradyrhizobium sp. RT3b Isolate Nodule
126 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
127 2935837841 Bradyrhizobium sp. RT4b Isolate Nodule
128 2935847175 Bradyrhizobium sp. RT5a Isolate Nodule
129 2935855204 Bradyrhizobium sp. RT7b Isolate Nodule
130 2935864058 Bradyrhizobium sp. RT9a Isolate Nodule
131 2935873716 Bradyrhizobium sp. RT9b Isolate Nodule
132 2935908558 Bradyrhizobium sp. F1.1.1 Isolate Nodule
133 2935916978 Bradyrhizobium sp. F1.13.3 Isolate Nodule
134 2935926038 Bradyrhizobium sp. F1.2.1 Isolate Nodule
135 2935934488 Bradyrhizobium sp. F1.2.2 Isolate Nodule
136 2935942939 Bradyrhizobium sp. F1.2.6 Isolate Nodule
137 2935951376 Bradyrhizobium sp. F1.2.8 Isolate Nodule
138 2935967501 Bradyrhizobium sp. F1.6.2 Isolate Nodule
139 2935992306 Bradyrhizobium sp. I1.7.5 Isolate Nodule
140 2936011229 Bradyrhizobium sp. JR1.1 Isolate Nodule
141 2936019824 Bradyrhizobium sp. JR1.5 Isolate Nodule
142 2936028420 Bradyrhizobium sp. JR1.7 Isolate Nodule
143 2936046547 Bradyrhizobium sp. JR3.12 Isolate Nodule
144 2936055302 Bradyrhizobium sp. JR4.1 Isolate Nodule
145 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
146 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
147 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
148 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule
149 8019576017 Bradyrhizobium sp. i1.7.7 Isolate Nodule
150 8019597564 Bradyrhizobium sp. i1.3.6 Isolate Nodule
151 8019619141 Bradyrhizobium sp. GM7.3 Isolate Nodule
152 8019687851 Bradyrhizobium sp. F1.13.4 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 59.04
Metatranscriptomes 0
Isolates 40.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.09
Nodule 41.88
Rhizoplane 4.71
Rhizosphere 40.84
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075369_10034562 3300006186 Bacteria 2146
2 Ga0070668_100006753 3300005347 Bacteria 8504
3 Ga0070668_100011108 3300005347 Bacteria 6702
4 Ga0070668_100040444 3300005347 Bacteria 3568
5 Ga0070668_100190056 3300005347 Bacteria 1681
6 Ga0070674_100015657 3300005356 Bacteria 4740
7 Ga0068867_100227284 3300005459 Bacteria 1507
8 Ga0070686_100086854 3300005544 Bacteria 2083
9 Ga0075365_10060633 3300006038 Bacteria 2524
10 Ga0097621_100258151 3300006237 Bacteria 1528
11 Ga0099824_1028496 3300006942 Bacteria 2523
12 Ga0099823_1003904 3300006944 Bacteria 14372
13 Ga0099823_1017992 3300006944 Bacteria 6847
14 Ga0099823_1020178 3300006944 Bacteria 6314
15 Ga0105245_10266306 3300009098 Bacteria 1669
16 Ga0105248_10291421 3300009177 Bacteria 1838
17 Ga0105249_10059055 3300009553 Bacteria 3517
18 Ga0105249_10151669 3300009553 Bacteria 2232
19 Ga0105239_10208582 3300010375 Bacteria 2190
20 Ga0157370_10134671 3300013104 Bacteria 2303
21 Ga0157369_10006104 3300013105 Bacteria 13985
22 Ga0157372_10114705 3300013307 Bacteria 3089
23 Ga0157375_10006989 3300013308 Bacteria 9855
24 Ga0163163_10062067 3300014325 Bacteria 3703
25 Ga0157380_10020628 3300014326 Bacteria 4928
26 Ga0157376_10242571 3300014969 Bacteria 1679
27 Ga0214544_1023129 3300021320 Bacteria 3550
28 Ga0214542_1012231 3300021321 Bacteria 11220
29 Ga0214543_1019695 3300021327 Bacteria 5716
30 Ga0207647_10049922 3300025904 Bacteria 2593
31 Ga0207657_10121628 3300025919 Bacteria 2148
32 Ga0207706_10118078 3300025933 Bacteria 2333
33 Ga0207709_10013819 3300025935 Bacteria 4456
34 Ga0207669_10005275 3300025937 Bacteria 5780
35 Ga0207661_10009876 3300025944 Bacteria 6855
36 Ga0207668_10063151 3300025972 Bacteria 2611
37 Ga0207668_10095802 3300025972 Bacteria 2191
38 Ga0207668_10174729 3300025972 Bacteria 1688
39 Ga0209389_1000147 3300027296 Bacteria 60189
40 Ga0209389_1002218 3300027296 Bacteria 14640
41 Ga0209389_1014856 3300027296 Bacteria 7069
42 Ga0209489_100875 3300027361 Bacteria 60189
43 Ga0209489_107807 3300027361 Bacteria 15432
44 Ga0209489_113128 3300027361 Bacteria 6944
45 Ga0209700_100138 3300027363 Bacteria 111133
46 Ga0209700_112344 3300027363 Bacteria 7060
47 Ga0307509_10012709 3300031507 Bacteria 10037
48 Ga0307509_10074978 3300031507 Bacteria 3515
49 Ga0307510_10011983 3300033180 Bacteria 10281
50 Ga0373954_0016320 3300035118 Bacteria 3322
51 Ga0373956_0023487 3300035119 Bacteria 2647
52 Ga0373955_0005101 3300035172 Bacteria 5869
53 Ga0373924_0002498 3300035410 Bacteria 6187
54 Ga0373935_0072589 3300035692 Bacteria 2222
55 Ga0373927_0004606 3300035695 Bacteria 9610
56 Ga0373927_0119977 3300035695 Bacteria 1716
57 Ga0373933_0131449 3300035724 Bacteria 1574
58 Ga0373937_0199946 3300036401 Bacteria 1878
59 Ga0373925_0071704 3300037068 Bacteria 2621
60 Ga0395898_0105677 3300037466 Bacteria 2700
61 Ga0495592_0055506 3300046454 Bacteria 2930
62 Ga0495629_0028927 3300046459 Bacteria 3933
63 Ga0495629_0052157 3300046459 Bacteria 2862
64 Ga0495651_0079002 3300046462 Bacteria 2487
65 Ga0495653_0026187 3300046463 Bacteria 4679
66 Ga0495608_0102624 3300046511 Bacteria 1843
67 Ga0495643_0091213 3300046522 Bacteria 1571
68 Ga0495648_0012390 3300046524 Bacteria 6367
69 Ga0495652_0162028 3300046529 Bacteria 1735
70 Ga0495652_0166178 3300046529 Bacteria 1707
71 Ga0495587_0020260 3300046536 Bacteria 4105
72 Ga0495587_0033072 3300046536 Bacteria 3123
73 Ga0495587_0112180 3300046536 Bacteria 1565
74 Ga0495622_0072542 3300046557 Bacteria 1588
75 Ga0495667_0016696 3300046559 Bacteria 4956
76 Ga0495635_0011171 3300046663 Bacteria 6295
77 Ga0495588_0021843 3300046674 Bacteria 3158
78 Ga0495657_0009077 3300046675 Bacteria 7557
79 Ga0495657_0028589 3300046675 Bacteria 3919
80 Ga0495657_0112831 3300046675 Bacteria 1720
81 Ga0495599_0009039 3300046678 Bacteria 6071
82 Ga0495623_0068835 3300046679 Bacteria 2206
83 Ga0495623_0095912 3300046679 Bacteria 1812
84 Ga0495623_0116414 3300046679 Bacteria 1615
85 Ga0495669_0024569 3300046684 Bacteria 2624
86 Ga0495600_0015667 3300046809 Bacteria 4799
87 Ga0495604_0001337 3300047317 Bacteria 20156
88 Ga0495604_0052687 3300047317 Bacteria 3149
89 Ga0495604_0081520 3300047317 Bacteria 2422
90 Ga0495604_0132195 3300047317 Bacteria 1792
91 Ga0495680_0016292 3300047322 Bacteria 6391
92 Ga0495675_0008631 3300047444 Bacteria 6317
93 Ga0495684_0000357 3300047471 Bacteria 36963
94 Ga0495593_0018745 3300047673 Bacteria 3886
95 Ga0495602_0043422 3300048088 Bacteria 4087
96 Ga0496101_0096201 3300048904 Bacteria 2210
97 Ga0496102_0117154 3300048905 Bacteria 2486
98 Ga0496103_0093847 3300048906 Bacteria 1895
99 Ga0496105_0039085 3300048908 Bacteria 3910
100 Ga0496106_0117718 3300048909 Bacteria 2074
101 Ga0496107_0020420 3300048910 Bacteria 4679
102 Ga0496112_0004998 3300048915 Bacteria 11374
103 Ga0496112_0011456 3300048915 Bacteria 8099
104 Ga0496112_0062742 3300048915 Bacteria 3666
105 Ga0496121_0195089 3300048924 Bacteria 1448
106 Ga0496125_0137035 3300048928 Bacteria 1710
107 nmdc:mga0yw44_40061_c1 3300050492 Bacteria 2781
108 nmdc:mga08x19_71362_c1 3300050514 Bacteria 2264
109 Ga0495595_0070326 3300053084 Bacteria 1653
110 Ga0495619_0006157 3300053085 Bacteria 7601
111 Ga0500645_009670 3300053730 Bacteria 3229
112 2509147023 2508501128 Bacteria 8613869
113 2513646395 2513237095 Bacteria 8976980
114 2513880161 2513237139 Bacteria 8737671
115 2517100974 2517093001 Bacteria 9002274
116 2517106891 2517093001 Bacteria 9002274
117 2524437899 2524023205 Bacteria 8918781
118 2524472030 2524023210 Bacteria 9029266
119 2524540862 2524023228 Bacteria 10118060
120 2524541005 2524023228 Bacteria 10118060
121 2528851672 2528768022 Bacteria 10457665
122 2528858105 2528768022 Bacteria 10457665
123 2617352662 2617270735 Bacteria 9163226
124 2617353325 2617270735 Bacteria 9163226
125 2617373412 2617270741 Bacteria 8201522
126 2805916940 2802429603 Bacteria 8777136
127 2818240413 2816332527 Bacteria 8933356
128 2824670824 2824661429 Bacteria 9877870
129 2824706186 2824704595 Bacteria 9667483
130 2824746147 2824746037 Bacteria 7911610
131 2838128221 2838122688 Bacteria 8803140
132 2841959871 2841957949 Bacteria 8652217
133 2841988294 2841983080 Bacteria 8395090
134 2847935456 2847930680 Bacteria 9342022
135 2874623340 2874620515 Bacteria 8290088
136 2874645941 2874645413 Bacteria 8214782
137 2874650002 2874645413 Bacteria 8214782
138 2879109544 2879099564 Bacteria 10442239
139 2885386025 2885383462 Bacteria 9473874
140 2888423910 2888419890 Bacteria 7857137
141 2904672729 2904666416 Bacteria 8226587
142 2904704031
143 2906632516 2906626472 Bacteria 8826946
144 2906652076 2906643746 Bacteria 8722424
145 2908779196 2908775508 Bacteria 8092255
146 2922376117
147 2922401057 2922393267 Bacteria 8285685
148 2922431219
149 2932785797 2932784394 Bacteria 9704911
150 2932826546 2932818245 Bacteria 9955613
151 2932826656 2932818245 Bacteria 9955613
152 2935612377 2935608549 Bacteria 8203142
153 2935619378 2935616580 Bacteria 9032984
154 2935625076 2935616580 Bacteria 9032984
155 2935647457 2935638405 Bacteria 10015038
156 2935656185 2935648319 Bacteria 8801166
157 2935665057 2935656913 Bacteria 8965014
158 2935666790 2935665750 Bacteria 9571747
159 2935677762 2935675223 Bacteria 9928132
160 2935823866 2935819856 Bacteria 8261050
161 2935836879 2935827899 Bacteria 10038562
162 2935845091 2935837841 Bacteria 9454360
163 2935848963 2935847175 Bacteria 8228321
164 2935858306 2935855204 Bacteria 9035059
165 2935863683 2935855204 Bacteria 9035059
166 2935871974 2935864058 Bacteria 9784707
167 2935872961 2935864058 Bacteria 9784707
168 2935873766 2935873716 Bacteria 9632195
169 2935882873 2935873716 Bacteria 9632195
170 2935908564 2935908558 Bacteria 8568796
171 2935923881 2935916978 Bacteria 9113783
172 2935924520 2935916978 Bacteria 9113783
173 2935926863 2935926038 Bacteria 8601059
174 2935935312 2935934488 Bacteria 8602579
175 2935943763 2935942939 Bacteria 8599779
176 2935952200 2935951376 Bacteria 8602333
177 2935968325 2935967501 Bacteria 8603075
178 2935993344 2935992306 Bacteria 9802711
179 2936019027 2936011229 Bacteria 8801034
180 2936023132 2936019824 Bacteria 8804134
181 2936032415 2936028420 Bacteria 8965941
182 2936050276 2936046547 Bacteria 8903709
183 2936061016 2936055302 Bacteria 8785755
184 8006933876 8006933436 Bacteria 10410654
185 8006973205 8006964411 Bacteria 8966052
186 8006983549 8006973647 Bacteria 10679141
187 8016589017 8016583857 Bacteria 10421953
188 8019580054 8019576017 Bacteria 10049540
189 8019603561 8019597564 Bacteria 10041141
190 8019625500 8019619141 Bacteria 9218857
191 8019690648 8019687851 Bacteria 8712826
192 Ga0075369_10034562
193 Ga0070668_100006753
194 Ga0070668_100011108
195 Ga0070668_100040444
196 Ga0070668_100190056
197 Ga0070674_100015657
198 Ga0068867_100227284
199 Ga0070686_100086854
200 Ga0075365_10060633
201 Ga0097621_100258151
202 Ga0099824_1028496
203 Ga0099823_1003904
204 Ga0099823_1017992
205 Ga0099823_1020178
206 Ga0105245_10266306
207 Ga0105248_10291421
208 Ga0105249_10059055
209 Ga0105249_10151669
210 Ga0105239_10208582
211 Ga0157370_10134671
212 Ga0157369_10006104
213 Ga0157372_10114705
214 Ga0157375_10006989
215 Ga0163163_10062067
216 Ga0157380_10020628
217 Ga0157376_10242571
218 Ga0214544_1023129
219 Ga0214542_1012231
220 Ga0214543_1019695
221 Ga0207647_10049922
222 Ga0207657_10121628
223 Ga0207706_10118078
224 Ga0207709_10013819
225 Ga0207669_10005275
226 Ga0207661_10009876
227 Ga0207668_10063151
228 Ga0207668_10095802
229 Ga0207668_10174729
230 Ga0209389_1000147
231 Ga0209389_1002218
232 Ga0209389_1014856
233 Ga0209489_100875
234 Ga0209489_107807
235 Ga0209489_113128
236 Ga0209700_100138
237 Ga0209700_112344
238 Ga0307509_10012709
239 Ga0307509_10074978
240 Ga0307510_10011983
241 Ga0373954_0016320
242 Ga0373956_0023487
243 Ga0373955_0005101
244 Ga0373924_0002498
245 Ga0373935_0072589
246 Ga0373927_0004606
247 Ga0373927_0119977
248 Ga0373933_0131449
249 Ga0373937_0199946
250 Ga0373925_0071704
251 Ga0395898_0105677
252 Ga0495592_0055506
253 Ga0495629_0028927
254 Ga0495629_0052157
255 Ga0495651_0079002
256 Ga0495653_0026187
257 Ga0495608_0102624
258 Ga0495643_0091213
259 Ga0495648_0012390
260 Ga0495652_0162028
261 Ga0495652_0166178
262 Ga0495587_0020260
263 Ga0495587_0033072
264 Ga0495587_0112180
265 Ga0495622_0072542
266 Ga0495667_0016696
267 Ga0495635_0011171
268 Ga0495588_0021843
269 Ga0495657_0009077
270 Ga0495657_0028589
271 Ga0495657_0112831
272 Ga0495599_0009039
273 Ga0495623_0068835
274 Ga0495623_0095912
275 Ga0495623_0116414
276 Ga0495669_0024569
277 Ga0495600_0015667
278 Ga0495604_0001337
279 Ga0495604_0052687
280 Ga0495604_0081520
281 Ga0495604_0132195
282 Ga0495680_0016292
283 Ga0495675_0008631
284 Ga0495684_0000357
285 Ga0495593_0018745
286 Ga0495602_0043422
287 Ga0496101_0096201
288 Ga0496102_0117154
289 Ga0496103_0093847
290 Ga0496105_0039085
291 Ga0496106_0117718
292 Ga0496107_0020420
293 Ga0496112_0004998
294 Ga0496112_0011456
295 Ga0496112_0062742
296 Ga0496121_0195089
297 Ga0496125_0137035
298 nmdc:mga0yw44_40061_c1
299 nmdc:mga08x19_71362_c1
300 Ga0495595_0070326
301 Ga0495619_0006157
302 Ga0500645_009670
303 2509147023
304 2513646395
305 2513880161
306 2517100974
307 2517106891
308 2524437899
309 2524472030
310 2524540862
311 2524541005
312 2528851672
313 2528858105
314 2617352662
315 2617353325
316 2617373412
317 2805916940
318 2818240413
319 2824670824
320 2824706186
321 2824746147
322 2838128221
323 2841959871
324 2841988294
325 2847935456
326 2874623340
327 2874645941
328 2874650002
329 2879109544
330 2885386025
331 2888423910
332 2904672729
333 2904704031
334 2906632516
335 2906652076
336 2908779196
337 2922376117
338 2922401057
339 2922431219
340 2932785797
341 2932826546
342 2932826656
343 2935612377
344 2935619378
345 2935625076
346 2935647457
347 2935656185
348 2935665057
349 2935666790
350 2935677762
351 2935823866
352 2935836879
353 2935845091
354 2935848963
355 2935858306
356 2935863683
357 2935871974
358 2935872961
359 2935873766
360 2935882873
361 2935908564
362 2935923881
363 2935924520
364 2935926863
365 2935935312
366 2935943763
367 2935952200
368 2935968325
369 2935993344
370 2936019027
371 2936023132
372 2936032415
373 2936050276
374 2936061016
375 8006933876
376 8006973205
377 8006983549
378 8016589017
379 8019580054
380 8019603561
381 8019625500
382 8019690648

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00589

Phage_integrase

Phage integrase family

237

420

0.91

PF13356

Arm-DNA-bind_3

Arm DNA-binding domain

21

101

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.8548 21 96
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.8404 21 96
8qca-assembly1.cif.gz_C cryoem structure of a s. cerevisiae ski2387 complex in the closed state bound to rna 0.8205 44 79
4buj-assembly1.cif.gz_D crystal structure of the s. cerevisiae ski2-3-8 complex 0.82 44 79
8qcb-assembly1.cif.gz_D cryoem structure of a s. cerevisiae ski2387 complex in the open state 0.8168 44 79
ID Description Score Start End Superfamily
3rmpC00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.8548 21 96 3.30.160.390
af_P76542_209_389_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8418 238 445 1.10.443.10
af_Q9H977_216_332_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8382 43 80 2.130.10.10
af_P76542_209_389_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8375 238 445 1.10.443.10
af_Q1LXZ7_784_997_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.8373 53 76 3.30.470.20
ID Description Score Start End GO Terms
AF-A0A0E3VXD9-F1-model_v4 Site-specific integrase/recombinase 0.9859 19 98 GO:0015074
AF-A0A5S4YD44-F1-model_v4 Tyrosine-type recombinase/integrase 0.9059 86 396 GO:0003677
GO:0006310
GO:0015074
AF-A0A654D7A5-F1-model_v4 Phage integrase family protein 0.9034 265 350 GO:0003677
GO:0006310
GO:0015074
AF-A0A160USV7-F1-model_v4 deleted 0.8991 200 450
AF-A0A5M8I7H1-F1-model_v4 deleted 0.8918 21 93

Map