F291845

General Info

Members Datasets Scaffolds Average Seq Length
190 157 380 364

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10109773|rootH1_101097732
Length 442
Sequence MTIKILVPVKRVVDPNVRVRVSAAGSIDTNGLKMSLNPFDECAVEKALQLKEAGYATHVTVLTCGQSNCQDVLRTALAMGADDAVLIDTGGATATLDSLAVARLLHAYLSAHEGYGLVLCGGLGNALSAIEVDGVSLPIALGLLVMMYPVLAKVRYDRLDSITSDRRMMTGYLVLNWLVGPLLMFSLAWTFLPDLPAYRTGLIIVGLARCIAMVIIWNDLACGDREAAAVLVALNSVFQVIAFAGLGWFYLEVLPGWLGLEQAALDVSTWDIARSVLIFLGVPLVAGYLSRRLGEKARGRDWYEQRFLPRIGPWALYGLLFTIVILFALQGRAITSNPLDVARIAIPLLAYFAIMWGGGFALGAAMKLGYQRTTTLAFTAAGNNFELAIAVAIATFGAASGQALAGVVGPLIEVPALVGLVYVSLALRGRFAPPATPRKAFP

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
13 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
16 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
17 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
18 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
19 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
20 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
21 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
22 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
23 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
24 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
25 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
34 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
35 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
36 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
37 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
38 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
39 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
40 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
41 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
42 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
43 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
44 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
45 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
46 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
47 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
48 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
49 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
50 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
51 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
52 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
53 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
54 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
55 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
56 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
57 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
58 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
59 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
60 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
61 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
62 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
63 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
64 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
65 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
66 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
67 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
68 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
69 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
70 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
71 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
72 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
73 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
74 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
75 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
76 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
77 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
78 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
79 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
80 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
81 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
82 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
83 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
84 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
85 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
97 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
98 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
102 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
103 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
104 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
105 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
106 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
107 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
108 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
109 2643221548 Streptomyces sp. Root55 Isolate Unclassified
110 2643221613 Oerskovia sp. Root22 Isolate Unclassified
111 2643221641 Nocardioides sp. Root122 Isolate Unclassified
112 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
113 2643221692 Nocardia sp. Root136 Isolate Unclassified
114 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
115 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
116 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
117 2739367898 Nocardioides sp. CF479 Isolate Unclassified
118 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
119 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
120 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
121 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
122 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
123 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
124 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
125 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
126 2842134933 Mycolicibacterium obuense SEMIA 442 Isolate Nodule
127 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
128 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
129 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
130 2858882152 Micromonospora noduli MED15 Isolate Nodule
131 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
132 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
133 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
134 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
135 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
136 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
137 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
138 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
139 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
140 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
141 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
142 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
143 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
144 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
145 2922554459 Rhodococcus sp. 66b Isolate Unclassified
146 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
147 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
148 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
149 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
150 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
151 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
152 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
153 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
154 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
155 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
156 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
157 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 71.05
Metatranscriptomes 0
Isolates 28.95

Biome Distribution

Category Percentage (%)
Aerial Root 1.05
Bulb 0
Endosphere 6.32
Nodule 1.58
Rhizoplane 4.21
Rhizosphere 63.68
Stem 0
Stem Tuber 0.53
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10109773 3300003316 Bacteria 1995
2 LJQas_1001169 3300000549 Bacteria 3959
3 Ga0055540_1000640 3300003792 Bacteria 24823
4 Ga0070658_10056822 3300005327 Bacteria 3182
5 Ga0070683_100045162 3300005329 Bacteria 4066
6 Ga0070668_100064546 3300005347 Bacteria 2839
7 Ga0070671_100001316 3300005355 Bacteria 18657
8 Ga0070714_100298441 3300005435 Bacteria 1501
9 Ga0070710_10004295 3300005437 Bacteria 6755
10 Ga0070684_100095800 3300005535 Bacteria 2645
11 Ga0070665_100024879 3300005548 Bacteria 6033
12 Ga0068852_100182818 3300005616 Bacteria 1973
13 Ga0068863_100046730 3300005841 Bacteria 4109
14 Ga0075365_10036962 3300006038 Bacteria 3168
15 Ga0075364_10004117 3300006051 Bacteria 8347
16 Ga0075370_10113171 3300006353 Bacteria 1577
17 Ga0105244_10067084 3300009036 Bacteria 1795
18 Ga0105237_10012517 3300009545 Bacteria 8936
19 Ga0105239_10017405 3300010375 Bacteria 7949
20 Ga0105239_10374443 3300010375 Bacteria 1610
21 Ga0157371_10065379 3300013102 Bacteria 2576
22 Ga0157370_10007935 3300013104 Bacteria 11494
23 Ga0163162_10018136 3300013306 Bacteria 6891
24 Ga0163162_10179816 3300013306 Bacteria 2241
25 Ga0157372_10057910 3300013307 Bacteria 4332
26 Ga0207426_1000909 3300025302 Bacteria 29658
27 Ga0207426_1014428 3300025302 Bacteria 2895
28 Ga0209051_1000033 3300025303 Bacteria 380540
29 Ga0209051_1000569 3300025303 Bacteria 44797
30 Ga0207697_10010187 3300025315 Bacteria 4029
31 Ga0207692_10005043 3300025898 Bacteria 5260
32 Ga0207671_10003367 3300025914 Bacteria 16035
33 Ga0207644_10026449 3300025931 Bacteria 3998
34 Ga0207661_10010979 3300025944 Bacteria 6542
35 Ga0207658_10015418 3300025986 Bacteria 5243
36 Ga0207641_10092409 3300026088 Bacteria 2650
37 Ga0265327_10007983 3300031251 Bacteria 8003
38 Ga0307509_10069994 3300031507 Bacteria 3665
39 Ga0316576_10012303 3300031727 Bacteria 5649
40 Ga0316578_10044388 3300031728 Bacteria 2585
41 Ga0307405_10201128 3300031731 Bacteria 1447
42 Ga0316577_10024091 3300031733 Bacteria 3382
43 Ga0307410_10009035 3300031852 Bacteria 5565
44 Ga0307412_10021286 3300031911 Bacteria 3959
45 Ga0307409_100022822 3300031995 Bacteria 4320
46 Ga0307409_100214761 3300031995 Bacteria 1732
47 Ga0307409_100376643 3300031995 Bacteria 1348
48 Ga0307507_10116929 3300033179 Bacteria 2151
49 Ga0373951_0000059 3300035091 Bacteria 44233
50 Ga0316574_0013771 3300035398 Bacteria 4658
51 Ga0316574_0046334 3300035398 Bacteria 2696
52 Ga0316582_0048525 3300036647 Bacteria 2684
53 Ga0316584_0005244 3300036712 Bacteria 8672
54 Ga0316584_0083037 3300036712 Bacteria 2399
55 Ga0439461_0000182 3300041410 Bacteria 8572
56 Ga0439466_0011842 3300041411 Bacteria 3220
57 Ga0439465_0012684 3300041413 Bacteria 2636
58 Ga0451791_0572391 3300041451 Bacteria 2640
59 Ga0451853_1264886 3300041512 Bacteria 1351
60 Ga0439431_0001207 3300041997 Bacteria 5645
61 Ga0439449_0014768 3300042007 Bacteria 2934
62 Ga0466967_0284495 3300045976 Bacteria 1587
63 Ga0495653_0058400 3300046463 Bacteria 2932
64 Ga0495580_0043641 3300046472 Bacteria 3191
65 Ga0495662_0023042 3300046476 Bacteria 3006
66 Ga0495664_0003800 3300046477 Bacteria 8237
67 Ga0495608_0020116 3300046511 Bacteria 4589
68 Ga0495666_0022040 3300046526 Bacteria 3154
69 Ga0495665_0065501 3300046531 Bacteria 1918
70 Ga0495645_0014414 3300046543 Bacteria 5609
71 Ga0495634_0072189 3300046642 Bacteria 2270
72 Ga0495635_0048023 3300046663 Bacteria 2942
73 Ga0495623_0039451 3300046679 Bacteria 3017
74 Ga0495646_0039966 3300046680 Bacteria 2890
75 Ga0495613_0011508 3300046689 Bacteria 6581
76 Ga0495600_0099379 3300046809 Bacteria 1896
77 Ga0495581_0061957 3300047315 Bacteria 2161
78 Ga0495604_0008106 3300047317 Bacteria 8321
79 Ga0495684_0011928 3300047471 Bacteria 6701
80 Ga0495602_0090102 3300048088 Bacteria 2548
81 Ga0496100_0001273 3300048903 Bacteria 12302
82 Ga0496101_0000031 3300048904 Bacteria 195195
83 Ga0496102_0000065 3300048905 Bacteria 161370
84 Ga0496103_0000048 3300048906 Bacteria 160911
85 Ga0496106_0026468 3300048909 Bacteria 4320
86 Ga0496107_0028299 3300048910 Bacteria 3982
87 Ga0496113_0287599 3300048916 Bacteria 1315
88 Ga0496116_0000125 3300048919 Bacteria 160885
89 Ga0496117_0000111 3300048920 Bacteria 184570
90 Ga0496118_0000083 3300048921 Bacteria 184570
91 Ga0496119_0005927 3300048922 Bacteria 11509
92 Ga0496120_0000652 3300048923 Bacteria 50969
93 Ga0496121_0003474 3300048924 Bacteria 22436
94 Ga0496124_0004796 3300048927 Bacteria 15573
95 Ga0496126_0000220 3300048929 Bacteria 124547
96 Ga0496126_0051202 3300048929 Bacteria 3760
97 Ga0501033_0021552 3300049570 Bacteria 4861
98 Ga0501034_0014321 3300049571 Bacteria 8173
99 Ga0501034_0026435 3300049571 Bacteria 5911
100 Ga0501034_0053552 3300049571 Bacteria 4062
101 Ga0501034_0153560 3300049571 Bacteria 2277
102 Ga0501036_0001763 3300049572 Bacteria 16825
103 Ga0501036_0005558 3300049572 Bacteria 10225
104 Ga0501037_0000826 3300049573 Bacteria 23159
105 Ga0501037_0001055 3300049573 Bacteria 20404
106 Ga0501037_0053382 3300049573 Bacteria 2956
107 Ga0501038_0000083 3300049574 Bacteria 80545
108 Ga0501038_0008157 3300049574 Bacteria 9639
109 Ga0501038_0021950 3300049574 Bacteria 5725
110 Ga0501038_0059122 3300049574 Bacteria 3284
111 Ga0501038_0072441 3300049574 Bacteria 2920
112 Ga0501038_0110698 3300049574 Bacteria 2275
113 Ga0501038_0211633 3300049574 Bacteria 1551
114 Ga0501039_0000068 3300049575 Bacteria 79387
115 Ga0501039_0000342 3300049575 Bacteria 33472
116 Ga0501039_0043096 3300049575 Bacteria 3486
117 Ga0501043_0000206 3300049579 Bacteria 54177
118 Ga0501043_0000562 3300049579 Bacteria 33187
119 Ga0501043_0018433 3300049579 Bacteria 5475
120 Ga0501043_0154038 3300049579 Bacteria 1798
121 Ga0501047_0037996 3300049581 Bacteria 4657
122 Ga0501070_0000868 3300049586 Bacteria 27496
123 Ga0501070_0002427 3300049586 Bacteria 16344
124 Ga0501070_0050642 3300049586 Bacteria 3447
125 Ga0501070_0059389 3300049586 Bacteria 3170
126 Ga0501073_0035178 3300049589 Bacteria 3561
127 Ga0501074_0086992 3300049590 Bacteria 2239
128 Ga0501035_0001824 3300049822 Bacteria 21492
129 Ga0501044_0001545 3300049823 Bacteria 26991
130 Ga0501044_0037599 3300049823 Bacteria 5058
131 Ga0501044_0044751 3300049823 Bacteria 4591
132 nmdc:mga00v17_3308_c1 3300050491 Bacteria 8309
133 nmdc:mga0yw44_90851_c1 3300050492 Bacteria 1929
134 Ga0500643_042912 3300053087 Bacteria 1321
135 Ga0500645_003769 3300053730 Bacteria 6037
136 2523385381 2523231044 Bacteria 6434991
137 2555230531 2554235227 Bacteria 3637389
138 2566995347 2565956761 Bacteria 6601618
139 2586058788 2585427649 Bacteria 9053857
140 2586064888 2585427649 Bacteria 9053857
141 2643762324 2643221548 Bacteria 8053412
142 2644081553 2643221613 Bacteria 4622396
143 2644228110 2643221641 Bacteria 4490190
144 2644458897 2643221682 Bacteria 6743283
145 2644518305 2643221692 Bacteria 7282860
146 2644639777 2643221715 Bacteria 6671032
147 2738888714 2738541308 Bacteria 7020677
148 2739237838 2738543011 Bacteria 5731169
149 2740165599 2739367898 Bacteria 4367674
150 2753036325 2751185725 Bacteria 5740550
151 2753324196 2751185792 Bacteria 5739090
152 2772645604 2772190715 Bacteria 6959372
153 2784472157 2784132109 Bacteria 3141763
154 2808872617 2808606365 Bacteria 4301966
155 2812363310 2811994880 Bacteria 4147780
156 2816503983 2816332139 Bacteria 9138787
157 2827629299 2827628540 Bacteria 6858585
158 2842139530 2842134933 Bacteria 5847019
159 2855673142 2855670206 Bacteria 7120389
160 2857293666 2857288857 Bacteria 7189066
161 2857720724 2857720070 Bacteria 3189373
162 2858887726 2858882152 Bacteria 7230291
163 2862178715 2862178590 Bacteria 8583590
164 2869065910 2869061728 Bacteria 7112407
165 2869069051 2869068681 Bacteria 7205615
166 2873319616 2873314349 Bacteria 8512634
167 2889303648 2889300758 Bacteria 5690814
168 2899370534 2899370129 Bacteria 6781179
169 2902803469 2902799365 Bacteria 5419524
170 2904540147 2904535858 Bacteria 6308016
171 2904769001 2904765812 Bacteria 5369154
172 2908811789 2908811453 Bacteria 5478616
173 2915363729 2915358134 Bacteria 6050864
174 2919420116 2919420072 Bacteria 5390363
175 2919434125 2919432681 Bacteria 5390474
176 2919448204 2919446982 Bacteria 3994487
177 2922556552 2922554459 Bacteria 6683962
178 2932433435 2932431166 Bacteria 4215299
179 2939650824 2939647034 Bacteria 4681660
180 2939747432 2939743619 Bacteria 5762299
181 2956941858 2956939328 Bacteria 3474458
182 2984577614 2984576629 Bacteria 4248407
183 2990259772 2990256926 Bacteria 4252839
184 3001119215 3001119090 Bacteria 3449530
185 3001890336 3001889506 Bacteria 2975194
186 8003831145 8003830390 Bacteria 6541657
187 8047720106 8047710418 Bacteria 11023148
188 8047720293 8047710418 Bacteria 11023148
189 8056058435 8056054917 Bacteria 5736694
190 8056670301 8056667051 Bacteria 6953971
191 rootH1_10109773
192 LJQas_1001169
193 Ga0055540_1000640
194 Ga0070658_10056822
195 Ga0070683_100045162
196 Ga0070668_100064546
197 Ga0070671_100001316
198 Ga0070714_100298441
199 Ga0070710_10004295
200 Ga0070684_100095800
201 Ga0070665_100024879
202 Ga0068852_100182818
203 Ga0068863_100046730
204 Ga0075365_10036962
205 Ga0075364_10004117
206 Ga0075370_10113171
207 Ga0105244_10067084
208 Ga0105237_10012517
209 Ga0105239_10017405
210 Ga0105239_10374443
211 Ga0157371_10065379
212 Ga0157370_10007935
213 Ga0163162_10018136
214 Ga0163162_10179816
215 Ga0157372_10057910
216 Ga0207426_1000909
217 Ga0207426_1014428
218 Ga0209051_1000033
219 Ga0209051_1000569
220 Ga0207697_10010187
221 Ga0207692_10005043
222 Ga0207671_10003367
223 Ga0207644_10026449
224 Ga0207661_10010979
225 Ga0207658_10015418
226 Ga0207641_10092409
227 Ga0265327_10007983
228 Ga0307509_10069994
229 Ga0316576_10012303
230 Ga0316578_10044388
231 Ga0307405_10201128
232 Ga0316577_10024091
233 Ga0307410_10009035
234 Ga0307412_10021286
235 Ga0307409_100022822
236 Ga0307409_100214761
237 Ga0307409_100376643
238 Ga0307507_10116929
239 Ga0373951_0000059
240 Ga0316574_0013771
241 Ga0316574_0046334
242 Ga0316582_0048525
243 Ga0316584_0005244
244 Ga0316584_0083037
245 Ga0439461_0000182
246 Ga0439466_0011842
247 Ga0439465_0012684
248 Ga0451791_0572391
249 Ga0451853_1264886
250 Ga0439431_0001207
251 Ga0439449_0014768
252 Ga0466967_0284495
253 Ga0495653_0058400
254 Ga0495580_0043641
255 Ga0495662_0023042
256 Ga0495664_0003800
257 Ga0495608_0020116
258 Ga0495666_0022040
259 Ga0495665_0065501
260 Ga0495645_0014414
261 Ga0495634_0072189
262 Ga0495635_0048023
263 Ga0495623_0039451
264 Ga0495646_0039966
265 Ga0495613_0011508
266 Ga0495600_0099379
267 Ga0495581_0061957
268 Ga0495604_0008106
269 Ga0495684_0011928
270 Ga0495602_0090102
271 Ga0496100_0001273
272 Ga0496101_0000031
273 Ga0496102_0000065
274 Ga0496103_0000048
275 Ga0496106_0026468
276 Ga0496107_0028299
277 Ga0496113_0287599
278 Ga0496116_0000125
279 Ga0496117_0000111
280 Ga0496118_0000083
281 Ga0496119_0005927
282 Ga0496120_0000652
283 Ga0496121_0003474
284 Ga0496124_0004796
285 Ga0496126_0000220
286 Ga0496126_0051202
287 Ga0501033_0021552
288 Ga0501034_0014321
289 Ga0501034_0026435
290 Ga0501034_0053552
291 Ga0501034_0153560
292 Ga0501036_0001763
293 Ga0501036_0005558
294 Ga0501037_0000826
295 Ga0501037_0001055
296 Ga0501037_0053382
297 Ga0501038_0000083
298 Ga0501038_0008157
299 Ga0501038_0021950
300 Ga0501038_0059122
301 Ga0501038_0072441
302 Ga0501038_0110698
303 Ga0501038_0211633
304 Ga0501039_0000068
305 Ga0501039_0000342
306 Ga0501039_0043096
307 Ga0501043_0000206
308 Ga0501043_0000562
309 Ga0501043_0018433
310 Ga0501043_0154038
311 Ga0501047_0037996
312 Ga0501070_0000868
313 Ga0501070_0002427
314 Ga0501070_0050642
315 Ga0501070_0059389
316 Ga0501073_0035178
317 Ga0501074_0086992
318 Ga0501035_0001824
319 Ga0501044_0001545
320 Ga0501044_0037599
321 Ga0501044_0044751
322 nmdc:mga00v17_3308_c1
323 nmdc:mga0yw44_90851_c1
324 Ga0500643_042912
325 Ga0500645_003769
326 2523385381
327 2555230531
328 2566995347
329 2586058788
330 2586064888
331 2643762324
332 2644081553
333 2644228110
334 2644458897
335 2644518305
336 2644639777
337 2738888714
338 2739237838
339 2740165599
340 2753036325
341 2753324196
342 2772645604
343 2784472157
344 2808872617
345 2812363310
346 2816503983
347 2827629299
348 2842139530
349 2855673142
350 2857293666
351 2857720724
352 2858887726
353 2862178715
354 2869065910
355 2869069051
356 2873319616
357 2889303648
358 2899370534
359 2902803469
360 2904540147
361 2904769001
362 2908811789
363 2915363729
364 2919420116
365 2919434125
366 2919448204
367 2922556552
368 2932433435
369 2939650824
370 2939747432
371 2956941858
372 2984577614
373 2990259772
374 3001119215
375 3001890336
376 8003831145
377 8047720106
378 8047720293
379 8056058435
380 8056670301

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01758

SBF

Sodium Bile acid symporter family

140

337

0.98

PF01012

ETF

Electron transfer flavoprotein domain

24

123

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4n7w-assembly1.cif.gz_A crystal structure of the sodium bile acid symporter from yersinia frederiksenii 0.8773 28 363
7cyg-assembly2.cif.gz_B crystal structure of a cysteine-pair mutant (y113c-p190c) of a bacterial bile acid transporter before disulfide bond formation 0.8762 27 356
7cyk-assembly2.cif.gz_B crystal structure of a second cysteine-pair mutant (v110c-i197c) of a bacterial bile acid transporter before disulfide bond formation 0.8594 30 355
7cyg-assembly2.cif.gz_B crystal structure of a cysteine-pair mutant (y113c-p190c) of a bacterial bile acid transporter before disulfide bond formation 0.8574 27 356
3zux-assembly1.cif.gz_A crystal structure of a bacterial homologue of the bile acid sodium symporter asbt. 0.8548 28 356
ID Description Score Start End Superfamily
af_I6X4W4_12_346_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.9359 20 353 1.20.1530.20
af_I6X4W4_12_346_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.9306 20 353 1.20.1530.20
af_A0A1D8PMP4_10_372_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.8897 25 353 1.20.1530.20
4n7wA00 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.8773 28 363 1.20.1530.20
af_Q6K739_98_402_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.8639 31 356 1.20.1530.20
ID Description Score Start End GO Terms
AF-A0A068EZ36-F1-model_v4 Arsenic transporter 0.9735 37 325 GO:0005886
GO:0015104
GO:0015105
GO:0015297
AF-A0A3L0VSH0-F1-model_v4 Arsenical-resistance protein 0.9689 25 359 GO:0005886
GO:0015104
GO:0015105
GO:0015297
AF-H6L7X8-F1-model_v4 Acr3 family arsenite transporter 0.9677 25 362 GO:0005886
GO:0015104
GO:0015105
GO:0015297
AF-A0A068EZ36-F1-model_v4 Arsenic transporter 0.9669 37 325 GO:0005886
GO:0015104
GO:0015105
GO:0015297
AF-A0A5F0K809-F1-model_v4 Arsenical-resistance protein 0.9653 25 363 GO:0005886
GO:0015104
GO:0015105
GO:0015297

Map