F288920

General Info

Members Datasets Scaffolds Average Seq Length
188 101 376 272

Family's Representative Sequence

Representative Sequence 3300005436|Ga0070713_100000113|Ga0070713_10000011344
Length 310
Sequence MPVFLCRAGNRLLKYMHFSKPERCMERSITCLERDSSRLTLRISSLAQWKTAENETKIRQYYDALYRAWGAQHWWPAETRWEVIVGAYLTQNTAWTNVERALANLRDKPNLLSVDRIRKIPLTQLERLIRPSGYFRQKAQRLKTFIAFLDLKYGGSLDDLFAQPTNKLREELLALNGVGPETADSILLYAGNHPVFVVDAYTRRILDRHGILPHKTDYEDIRNLFQQALGPTVHDQEQKPPNSEPQLEAGFRGAAHAPSSMSTAKRSALVQVYNEMHGLIVGVGKHHCGKSHPKCDGCPLQPFLPGNNAG

Samples

Sample ID Description Type Environment
1 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
2 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
3 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
11 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
12 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
19 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
20 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
21 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
55 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
56 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
57 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
58 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
59 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
60 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
61 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
62 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
63 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
64 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
65 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
66 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
67 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
68 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
69 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
70 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
73 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
74 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
75 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
76 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
77 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
78 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
81 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
82 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
83 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
84 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
85 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
86 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
87 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
88 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
89 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
90 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
91 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
92 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
93 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
94 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
95 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
99 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
100 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
101 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.47
Metatranscriptomes 0.53
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.91
Rhizosphere 92.55
Stem 0
Stem Tuber 0
Unclassified 15.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070713_100000113 3300005436 Bacteria 52925
2 LJNas_1000202 3300000546 Bacteria 10132
3 Ga0070709_10000365 3300005434 Bacteria 27772
4 Ga0070709_10028622 3300005434 Bacteria 3325
5 Ga0070709_10164894 3300005434 Unclassified 1544
6 Ga0070709_10288765 3300005434 Bacteria 1194
7 Ga0070714_100216627 3300005435 Bacteria 1758
8 Ga0070714_100261854 3300005435 Bacteria 1601
9 Ga0070713_100000133 3300005436 Bacteria 48970
10 Ga0070713_100006608 3300005436 Bacteria 8060
11 Ga0070713_100020703 3300005436 Bacteria 5048
12 Ga0070713_100137360 3300005436 Bacteria 2161
13 Ga0070713_100163190 3300005436 Bacteria 1990
14 Ga0070713_100209949 3300005436 Bacteria 1762
15 Ga0070713_100354581 3300005436 Bacteria 1362
16 Ga0070710_10138484 3300005437 Bacteria 1490
17 Ga0070711_100000236 3300005439 Bacteria 28538
18 Ga0070711_100021168 3300005439 Unclassified 4201
19 Ga0070711_100057678 3300005439 Bacteria 2690
20 Ga0070711_100080348 3300005439 Bacteria 2321
21 Ga0070711_100169547 3300005439 Unclassified 1663
22 Ga0070681_10107133 3300005458 Unclassified 2736
23 Ga0070706_100023936 3300005467 Bacteria 5623
24 Ga0070684_100034374 3300005535 Unclassified 4334
25 Ga0070684_100223315 3300005535 Unclassified 1719
26 Ga0070697_100076053 3300005536 Unclassified 2761
27 Ga0070697_100676791 3300005536 Unclassified 909
28 Ga0070693_100294469 3300005547 Bacteria 1091
29 Ga0068854_100079287 3300005578 Bacteria 2420
30 Ga0068856_100001684 3300005614 Bacteria 23135
31 Ga0068856_100011020 3300005614 Bacteria 8780
32 Ga0068852_100040330 3300005616 Unclassified 3938
33 Ga0068864_100087754 3300005618 Bacteria 2739
34 Ga0068863_100025602 3300005841 Bacteria 5626
35 Ga0068863_100407032 3300005841 Bacteria 1331
36 Ga0070717_10001604 3300006028 Bacteria 15646
37 Ga0070717_10019536 3300006028 Bacteria 5316
38 Ga0070717_10026510 3300006028 Bacteria 4623
39 Ga0070717_10038373 3300006028 Bacteria 3893
40 Ga0070717_10390791 3300006028 Bacteria 1248
41 Ga0070715_10011123 3300006163 Bacteria 3232
42 Ga0070715_10038582 3300006163 Bacteria 1984
43 Ga0070716_100005938 3300006173 Bacteria 5942
44 Ga0070716_100006163 3300006173 Bacteria 5853
45 Ga0070712_100000084 3300006175 Bacteria 48408
46 Ga0070712_100000156 3300006175 Bacteria 36864
47 Ga0070712_100065352 3300006175 Bacteria 2582
48 Ga0075436_100186526 3300006914 Bacteria 1467
49 Ga0105240_10102616 3300009093 Bacteria 3476
50 Ga0105245_10012788 3300009098 Bacteria 7311
51 Ga0105241_10030404 3300009174 Bacteria 4036
52 Ga0105238_10030813 3300009551 Bacteria 5459
53 Ga0105238_10164789 3300009551 Bacteria 2192
54 Ga0099796_10035390 3300010159 Bacteria 1656
55 Ga0105239_10205480 3300010375 Bacteria 2207
56 Ga0105239_10365646 3300010375 Bacteria 1630
57 Ga0157370_10384959 3300013104 Bacteria 1292
58 Ga0157369_10000739 3300013105 Bacteria 42128
59 Ga0157374_10242252 3300013296 Bacteria 1773
60 Ga0157378_10025220 3300013297 Bacteria 5238
61 Ga0163163_10001934 3300014325 Bacteria 17541
62 Ga0163163_10001944 3300014325 Bacteria 17481
63 Ga0207685_10009626 3300025905 Bacteria 2814
64 Ga0207685_10015758 3300025905 Bacteria 2402
65 Ga0207699_10004593 3300025906 Bacteria 6600
66 Ga0207699_10125417 3300025906 Bacteria 1666
67 Ga0207699_10244404 3300025906 Unclassified 1234
68 Ga0207707_10039859 3300025912 Bacteria 4104
69 Ga0207707_10106829 3300025912 Bacteria 2447
70 Ga0207693_10000015 3300025915 Bacteria 147464
71 Ga0207693_10000044 3300025915 Bacteria 103362
72 Ga0207693_10006227 3300025915 Bacteria 9897
73 Ga0207693_10049557 3300025915 Bacteria 3298
74 Ga0207693_10099073 3300025915 Unclassified 2285
75 Ga0207663_10112179 3300025916 Bacteria 1852
76 Ga0207663_10280558 3300025916 Bacteria 1237
77 Ga0207660_10056612 3300025917 Unclassified 2806
78 Ga0207646_10111201 3300025922 Unclassified 2458
79 Ga0207687_10126305 3300025927 Bacteria 1921
80 Ga0207700_10000621 3300025928 Bacteria 20713
81 Ga0207700_10001328 3300025928 Bacteria 14009
82 Ga0207700_10049139 3300025928 Bacteria 3136
83 Ga0207700_10112046 3300025928 Bacteria 2197
84 Ga0207700_10243435 3300025928 Bacteria 1534
85 Ga0207664_10059408 3300025929 Bacteria 3044
86 Ga0207664_10093759 3300025929 Bacteria 2466
87 Ga0207664_10222047 3300025929 Unclassified 1639
88 Ga0207665_10004111 3300025939 Bacteria 9703
89 Ga0207665_10009768 3300025939 Bacteria 6300
90 Ga0207665_10010377 3300025939 Bacteria 6118
91 Ga0207665_10072560 3300025939 Bacteria 2352
92 Ga0207702_10004084 3300026078 Bacteria 13098
93 Ga0207702_10064740 3300026078 Bacteria 3129
94 Ga0207702_10344220 3300026078 Bacteria 1425
95 Ga0207641_10390034 3300026088 Bacteria 1335
96 Ga0207674_10083542 3300026116 Bacteria 3193
97 Ga0207683_10185177 3300026121 Bacteria 1889
98 Ga0265338_10025026 3300028800 Bacteria 6076
99 Ga0265338_10048075 3300028800 Bacteria 3886
100 Ga0265338_10481061 3300028800 Unclassified 876
101 Ga0265762_1002384 3300030760 Bacteria 3403
102 Ga0265328_10017029 3300031239 Bacteria 2820
103 Ga0265325_10004838 3300031241 Bacteria 8424
104 Ga0265339_10022916 3300031249 Bacteria 3612
105 Ga0265339_10023894 3300031249 Bacteria 3528
106 Ga0265339_10054496 3300031249 Bacteria 2172
107 Ga0265316_10013682 3300031344 Bacteria 7196
108 Ga0265316_10054603 3300031344 Bacteria 3127
109 Ga0265314_10050756 3300031711 Bacteria 2893
110 Ga0373926_0044656 3300035083 Bacteria 1588
111 Ga0373934_0002708 3300035086 Bacteria 6499
112 Ga0373923_0030741 3300035111 Bacteria 2161
113 Ga0373923_0162713 3300035111 Bacteria 1019
114 Ga0373936_0000692 3300035113 Bacteria 11765
115 Ga0373945_0004437 3300035116 Bacteria 4457
116 Ga0373945_0055059 3300035116 Unclassified 1472
117 Ga0373945_0093469 3300035116 Bacteria 1167
118 Ga0373954_0030816 3300035118 Bacteria 2474
119 Ga0373954_0151784 3300035118 Bacteria 1132
120 Ga0373943_0000063 3300035170 Bacteria 37297
121 Ga0373943_0024448 3300035170 Bacteria 2816
122 Ga0373943_0143953 3300035170 Unclassified 1286
123 Ga0373946_0009635 3300035171 Bacteria 3563
124 Ga0373946_0031625 3300035171 Bacteria 2121
125 Ga0373955_0029871 3300035172 Bacteria 2840
126 Ga0373935_0015482 3300035692 Bacteria 4610
127 Ga0373927_0000344 3300035695 Bacteria 36497
128 Ga0373927_0012686 3300035695 Bacteria 5605
129 Ga0373927_0066367 3300035695 Bacteria 2334
130 Ga0373933_0070809 3300035724 Bacteria 2122
131 Ga0373947_0000069 3300035725 Bacteria 51990
132 Ga0373947_0005512 3300035725 Bacteria 7385
133 Ga0373947_0118066 3300035725 Bacteria 1683
134 Ga0373925_0001903 3300037068 Bacteria 17320
135 Ga0373925_0021361 3300037068 Bacteria 4715
136 Ga0373925_0053546 3300037068 Unclassified 3017
137 Ga0373925_0209798 3300037068 Bacteria 1551
138 Ga0436363_1191640 3300039450 Bacteria 5619
139 Ga0466961_0126283 3300044693 Unclassified 1605
140 Ga0451576_0058628 3300045051 Unclassified 4023
141 Ga0451576_0147582 3300045051 Bacteria 2452
142 Ga0466958_0380388 3300045836 Unclassified 910
143 Ga0466967_0214612 3300045976 Unclassified 1826
144 Ga0466967_0450111 3300045976 Bacteria 1258
145 Ga0495603_0157284 3300046455 Unclassified 1319
146 Ga0495629_0005250 3300046459 Bacteria 9685
147 Ga0495580_0000315 3300046472 Bacteria 39584
148 Ga0495580_0008910 3300046472 Bacteria 7934
149 Ga0495580_0072297 3300046472 Bacteria 2409
150 Ga0495580_0126275 3300046472 Bacteria 1775
151 Ga0495580_0351381 3300046472 Unclassified 999
152 Ga0495582_0000754 3300046473 Bacteria 17857
153 Ga0495582_0042413 3300046473 Unclassified 2506
154 Ga0495582_0216720 3300046473 Bacteria 1095
155 Ga0495639_0024930 3300046475 Bacteria 2635
156 Ga0495664_0014224 3300046477 Bacteria 4508
157 Ga0495628_0111347 3300046516 Bacteria 2105
158 Ga0495630_0068535 3300046517 Bacteria 2668
159 Ga0495665_0096585 3300046531 Unclassified 1552
160 Ga0495645_0133498 3300046543 Bacteria 1738
161 Ga0495645_0250663 3300046543 Unclassified 1177
162 Ga0495667_0162817 3300046559 Bacteria 1435
163 Ga0495623_0004748 3300046679 Bacteria 8931
164 Ga0495623_0021777 3300046679 Bacteria 4140
165 Ga0495658_0143301 3300046683 Bacteria 1463
166 Ga0495669_0185829 3300046684 Bacteria 991
167 Ga0495624_0019914 3300046690 Bacteria 4471
168 Ga0495674_0061133 3300047319 Bacteria 3284
169 Ga0495684_0065242 3300047471 Bacteria 2768
170 Ga0495602_0043581 3300048088 Bacteria 4078
171 Ga0495602_0511365 3300048088 Bacteria 838
172 Ga0496102_0216388 3300048905 Bacteria 1806
173 Ga0496104_0027552 3300048907 Bacteria 5260
174 Ga0496104_0089534 3300048907 Bacteria 2940
175 Ga0496104_0153908 3300048907 Bacteria 2207
176 Ga0496105_0001154 3300048908 Bacteria 18419
177 Ga0496105_0138030 3300048908 Unclassified 2008
178 Ga0496107_0488989 3300048910 Bacteria 913
179 Ga0496110_0228717 3300048913 Bacteria 1691
180 Ga0496112_0021444 3300048915 Bacteria 6145
181 Ga0496112_0131867 3300048915 Bacteria 2470
182 Ga0496112_0328782 3300048915 Unclassified 1473
183 Ga0496112_0412660 3300048915 Unclassified 1289
184 Ga0496113_0011404 3300048916 Bacteria 5925
185 Ga0501073_0054364 3300049589 Bacteria 2803
186 nmdc:mga08x19_172317_c1 3300050514 Bacteria 1474
187 nmdc:mga08x19_4059_c1 3300050514 Bacteria 8694
188 Ga0501084_0232734 3300054114 Bacteria 1555
189 Ga0070713_100000113
190 LJNas_1000202
191 Ga0070709_10000365
192 Ga0070709_10028622
193 Ga0070709_10164894
194 Ga0070709_10288765
195 Ga0070714_100216627
196 Ga0070714_100261854
197 Ga0070713_100000133
198 Ga0070713_100006608
199 Ga0070713_100020703
200 Ga0070713_100137360
201 Ga0070713_100163190
202 Ga0070713_100209949
203 Ga0070713_100354581
204 Ga0070710_10138484
205 Ga0070711_100000236
206 Ga0070711_100021168
207 Ga0070711_100057678
208 Ga0070711_100080348
209 Ga0070711_100169547
210 Ga0070681_10107133
211 Ga0070706_100023936
212 Ga0070684_100034374
213 Ga0070684_100223315
214 Ga0070697_100076053
215 Ga0070697_100676791
216 Ga0070693_100294469
217 Ga0068854_100079287
218 Ga0068856_100001684
219 Ga0068856_100011020
220 Ga0068852_100040330
221 Ga0068864_100087754
222 Ga0068863_100025602
223 Ga0068863_100407032
224 Ga0070717_10001604
225 Ga0070717_10019536
226 Ga0070717_10026510
227 Ga0070717_10038373
228 Ga0070717_10390791
229 Ga0070715_10011123
230 Ga0070715_10038582
231 Ga0070716_100005938
232 Ga0070716_100006163
233 Ga0070712_100000084
234 Ga0070712_100000156
235 Ga0070712_100065352
236 Ga0075436_100186526
237 Ga0105240_10102616
238 Ga0105245_10012788
239 Ga0105241_10030404
240 Ga0105238_10030813
241 Ga0105238_10164789
242 Ga0099796_10035390
243 Ga0105239_10205480
244 Ga0105239_10365646
245 Ga0157370_10384959
246 Ga0157369_10000739
247 Ga0157374_10242252
248 Ga0157378_10025220
249 Ga0163163_10001934
250 Ga0163163_10001944
251 Ga0207685_10009626
252 Ga0207685_10015758
253 Ga0207699_10004593
254 Ga0207699_10125417
255 Ga0207699_10244404
256 Ga0207707_10039859
257 Ga0207707_10106829
258 Ga0207693_10000015
259 Ga0207693_10000044
260 Ga0207693_10006227
261 Ga0207693_10049557
262 Ga0207693_10099073
263 Ga0207663_10112179
264 Ga0207663_10280558
265 Ga0207660_10056612
266 Ga0207646_10111201
267 Ga0207687_10126305
268 Ga0207700_10000621
269 Ga0207700_10001328
270 Ga0207700_10049139
271 Ga0207700_10112046
272 Ga0207700_10243435
273 Ga0207664_10059408
274 Ga0207664_10093759
275 Ga0207664_10222047
276 Ga0207665_10004111
277 Ga0207665_10009768
278 Ga0207665_10010377
279 Ga0207665_10072560
280 Ga0207702_10004084
281 Ga0207702_10064740
282 Ga0207702_10344220
283 Ga0207641_10390034
284 Ga0207674_10083542
285 Ga0207683_10185177
286 Ga0265338_10025026
287 Ga0265338_10048075
288 Ga0265338_10481061
289 Ga0265762_1002384
290 Ga0265328_10017029
291 Ga0265325_10004838
292 Ga0265339_10022916
293 Ga0265339_10023894
294 Ga0265339_10054496
295 Ga0265316_10013682
296 Ga0265316_10054603
297 Ga0265314_10050756
298 Ga0373926_0044656
299 Ga0373934_0002708
300 Ga0373923_0030741
301 Ga0373923_0162713
302 Ga0373936_0000692
303 Ga0373945_0004437
304 Ga0373945_0055059
305 Ga0373945_0093469
306 Ga0373954_0030816
307 Ga0373954_0151784
308 Ga0373943_0000063
309 Ga0373943_0024448
310 Ga0373943_0143953
311 Ga0373946_0009635
312 Ga0373946_0031625
313 Ga0373955_0029871
314 Ga0373935_0015482
315 Ga0373927_0000344
316 Ga0373927_0012686
317 Ga0373927_0066367
318 Ga0373933_0070809
319 Ga0373947_0000069
320 Ga0373947_0005512
321 Ga0373947_0118066
322 Ga0373925_0001903
323 Ga0373925_0021361
324 Ga0373925_0053546
325 Ga0373925_0209798
326 Ga0436363_1191640
327 Ga0466961_0126283
328 Ga0451576_0058628
329 Ga0451576_0147582
330 Ga0466958_0380388
331 Ga0466967_0214612
332 Ga0466967_0450111
333 Ga0495603_0157284
334 Ga0495629_0005250
335 Ga0495580_0000315
336 Ga0495580_0008910
337 Ga0495580_0072297
338 Ga0495580_0126275
339 Ga0495580_0351381
340 Ga0495582_0000754
341 Ga0495582_0042413
342 Ga0495582_0216720
343 Ga0495639_0024930
344 Ga0495664_0014224
345 Ga0495628_0111347
346 Ga0495630_0068535
347 Ga0495665_0096585
348 Ga0495645_0133498
349 Ga0495645_0250663
350 Ga0495667_0162817
351 Ga0495623_0004748
352 Ga0495623_0021777
353 Ga0495658_0143301
354 Ga0495669_0185829
355 Ga0495624_0019914
356 Ga0495674_0061133
357 Ga0495684_0065242
358 Ga0495602_0043581
359 Ga0495602_0511365
360 Ga0496102_0216388
361 Ga0496104_0027552
362 Ga0496104_0089534
363 Ga0496104_0153908
364 Ga0496105_0001154
365 Ga0496105_0138030
366 Ga0496107_0488989
367 Ga0496110_0228717
368 Ga0496112_0021444
369 Ga0496112_0131867
370 Ga0496112_0328782
371 Ga0496112_0412660
372 Ga0496113_0011404
373 Ga0501073_0054364
374 nmdc:mga08x19_172317_c1
375 nmdc:mga08x19_4059_c1
376 Ga0501084_0232734

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00730

HhH-GPD

HhH-GPD superfamily base excision DNA repair protein

85

231

0.95

PF00633

HHH

Helix-hairpin-helix motif

166

189

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1orp-assembly1.cif.gz_A structure of a trapped endonuclease iii-dna covalent intermediate: estranged-adenine complex 0.8585 7 264
1p59-assembly1.cif.gz_A structure of a non-covalent endonuclease iii-dna complex 0.8475 7 263
1orp-assembly1.cif.gz_A structure of a trapped endonuclease iii-dna covalent intermediate: estranged-adenine complex 0.8436 7 264
8a5c-assembly1.cif.gz_A crystal structure of deinococcus radiodurans endonuclease iii-1 y100l variant 0.8395 1 262
7rdt-assembly1.cif.gz_A structure of human nthl1 - linker 1 chimera 0.8335 32 262
ID Description Score Start End Superfamily
af_Q58829_25_138_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9566 26 138 1.10.340.30
af_Q58829_25_138_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9404 26 138 1.10.340.30
af_O35980_108_217_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9074 32 138 1.10.340.30
af_Q9SIC4_169_271_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9071 32 138 1.10.340.30
1pu6B02 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9051 25 141 1.10.340.30
ID Description Score Start End GO Terms
AF-A0A2V9TFY6-F1-model_v4 HhH-GPD domain-containing protein 0.9822 6 194 GO:0003677
GO:0006284
GO:0016798
GO:0046872
GO:0051539
AF-A0A662M079-F1-model_v4 Endonuclease 0.9754 13 159 GO:0004519
GO:0006284
GO:0051539
AF-A0A4Q1SDG9-F1-model_v4 Base excision DNA repair protein 0.9747 3 254 GO:0003677
GO:0006284
GO:0016798
GO:0046872
GO:0051539
AF-A0A2M7M2C2-F1-model_v4 Endonuclease 0.9744 10 180 GO:0004519
GO:0006284
GO:0046872
GO:0051539
AF-X1IX72-F1-model_v4 HhH-GPD domain-containing protein 0.9742 8 151 GO:0003677
GO:0003824
GO:0006284
GO:0051539

Map