F288515

General Info

Members Datasets Scaffolds Average Seq Length
187 162 374 245

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2784746763|2785342703
Length 274
Sequence RLTQPERQQIALGLADGLAYAEIARRLDRPTSTITREVMRNGGPTGYRADLAHRATERRAQRRRQAAPRGPAAATAAYGRDTEAVREFEESFATVMMASGMPKMMARVMACLTLTDSGSLTASDLVQRLQVSPASVSKAITYLEGQAFVRRERDERRRERYVVDDDIWYQSMLASARALNQVIEIARQGVGVLGRETPAAARLENVARFLDFVSESTIRAAEQARAVLHTKPGSGEAEGARAGSGKADTGDPGSAAGSGETNGTGPDSAGQQRP

Samples

Sample ID Description Type Environment
1 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
31 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
32 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
33 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
35 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
36 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
37 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
38 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
44 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
46 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
47 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
48 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
49 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
50 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
51 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
52 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
53 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
54 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
55 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
56 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
57 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
58 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
59 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
60 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
61 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
62 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
63 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
64 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
65 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
66 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
67 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
68 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
69 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
70 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
71 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
72 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
73 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
74 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
75 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
76 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
77 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
78 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
79 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
80 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
81 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
82 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
83 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
84 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
85 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
86 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
87 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
88 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
89 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
90 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
91 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
92 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
98 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
99 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
105 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
106 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
109 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
110 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
111 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
112 2643221578 Streptomyces sp. Root63 Isolate Unclassified
113 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
114 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
115 2643221616 Leifsonia sp. Root227 Isolate Unclassified
116 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
117 2643221670 Streptomyces sp. Root431 Isolate Unclassified
118 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
119 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
120 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
121 2643221714 Streptomyces sp. Root264 Isolate Unclassified
122 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
123 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
124 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
125 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
126 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
127 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
128 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
129 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
130 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
131 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
132 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
133 2858882152 Micromonospora noduli MED15 Isolate Nodule
134 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
135 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
136 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
137 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
138 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
139 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
140 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
141 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
142 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
143 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
144 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
145 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
146 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
147 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
148 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
149 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
150 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
151 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
152 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
153 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
154 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
155 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
156 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
157 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
158 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
159 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
160 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
161 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
162 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 68.98
Metatranscriptomes 1.6
Isolates 29.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.63
Nodule 3.74
Rhizoplane 1.6
Rhizosphere 59.89
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25164J39214_1002536 3300002772 Bacteria 2728
2 JGI25406J46586_10005578 3300003203 Bacteria 5828
3 JGI25165J46597_1000014 3300003214 Bacteria 390383
4 JGI25165J46597_1000125 3300003214 Bacteria 131155
5 rootL2_10182887 3300003322 Bacteria 1948
6 rootH1_10072240 3300003323 Bacteria 7536
7 Ga0006562J51391_1171740 3300003578 Bacteria 2270
8 Ga0006562J51391_1171741 3300003578 Bacteria 1880
9 Ga0070683_100585296 3300005329 Bacteria 1067
10 Ga0070668_100075361 3300005347 Bacteria 2634
11 Ga0070709_10128107 3300005434 Bacteria 1729
12 Ga0070713_100149321 3300005436 Bacteria 2077
13 Ga0070701_10192639 3300005438 Bacteria 1200
14 Ga0070711_100113289 3300005439 Bacteria 1994
15 Ga0070663_100188143 3300005455 Bacteria 1605
16 Ga0070684_100114801 3300005535 Bacteria 2418
17 Ga0068859_100172897 3300005617 Bacteria 2242
18 Ga0081538_10193352 3300005981 Bacteria 849
19 Ga0081539_10000241 3300005985 Bacteria 128623
20 Ga0070717_10089914 3300006028 Bacteria 2591
21 Ga0075368_10007951 3300006042 Bacteria 3761
22 Ga0075363_100006355 3300006048 Bacteria 5352
23 Ga0070716_100028719 3300006173 Bacteria 2999
24 Ga0075367_10006627 3300006178 Bacteria 5869
25 Ga0075370_10067714 3300006353 Bacteria 2038
26 Ga0075370_10142828 3300006353 Bacteria 1400
27 Ga0075431_100689269 3300006847 Bacteria 1000
28 Ga0097620_100172903 3300006931 Bacteria 2242
29 Ga0105245_10591879 3300009098 Bacteria 1135
30 Ga0105242_10378355 3300009176 Bacteria 1315
31 Ga0105246_10059007 3300011119 Bacteria 2660
32 Ga0157369_10646448 3300013105 Bacteria 1091
33 Ga0157369_10890441 3300013105 Bacteria 913
34 Ga0182008_10005032 3300014497 Bacteria 7603
35 Ga0182006_1019791 3300015261 Bacteria 2829
36 Ga0182007_10001587 3300015262 Bacteria 12117
37 Ga0206353_11522431 3300020082 Bacteria 1177
38 Ga0207427_100039 3300025231 Bacteria 291576
39 Ga0209437_100441 3300025233 Bacteria 34752
40 Ga0209233_1000014 3300025261 Bacteria 996641
41 Ga0207426_1000547 3300025302 Bacteria 52775
42 Ga0207426_1010479 3300025302 Bacteria 3592
43 Ga0207692_10000757 3300025898 Bacteria 11416
44 Ga0207652_10293021 3300025921 Bacteria 1468
45 Ga0207664_10039142 3300025929 Bacteria 3680
46 Ga0207665_10008739 3300025939 Bacteria 6664
47 Ga0207668_10012261 3300025972 Bacteria 5241
48 Ga0209813_10003696 3300027866 Bacteria 3602
49 Ga0268265_10067767 3300028380 Bacteria 2764
50 Ga0307515_10060990 3300028794 Bacteria 5363
51 Ga0307508_10024117 3300031616 Bacteria 5521
52 Ga0307508_10043887 3300031616 Bacteria 4002
53 Ga0307508_10047705 3300031616 Bacteria 3818
54 Ga0307508_10087634 3300031616 Bacteria 2696
55 Ga0307516_10000645 3300031730 Bacteria 47214
56 Ga0307516_10052555 3300031730 Bacteria 3987
57 Ga0307406_10478338 3300031901 Bacteria 1005
58 Ga0307416_100096683 3300032002 Bacteria 2555
59 Ga0307416_101177060 3300032002 Bacteria 872
60 Ga0307507_10309121 3300033179 Bacteria 962
61 Ga0439436_0000679 3300041404 Bacteria 9147
62 Ga0439436_0002729 3300041404 Bacteria 5333
63 Ga0439439_0007385 3300041406 Bacteria 2569
64 Ga0439439_0014046 3300041406 Bacteria 1946
65 Ga0451797_0915784 3300041453 Bacteria 1098
66 Ga0451853_0294925 3300041512 Bacteria 2772
67 Ga0451853_2035290 3300041512 Bacteria 1882
68 Ga0439442_003644 3300042002 Bacteria 3051
69 Ga0439449_0001265 3300042007 Bacteria 9911
70 Ga0439449_0077137 3300042007 Bacteria 1229
71 Ga0439457_000011 3300042014 Bacteria 39610
72 Ga0439457_023010 3300042014 Bacteria 1379
73 Ga0439462_0016836 3300042015 Bacteria 1892
74 Ga0439462_0051663 3300042015 Bacteria 1105
75 Ga0450900_025363 3300042136 Bacteria 844
76 Ga0466969_0166875 3300044656 Bacteria 1010
77 Ga0466972_0001614 3300044658 Bacteria 11028
78 Ga0466972_0186871 3300044658 Bacteria 971
79 Ga0466965_0002186 3300044683 Bacteria 8222
80 Ga0466965_0002341 3300044683 Bacteria 8017
81 Ga0466966_0058968 3300044684 Bacteria 2425
82 Ga0466963_0173853 3300044694 Bacteria 1502
83 Ga0466971_0024144 3300044719 Bacteria 2712
84 Ga0466957_0148270 3300044842 Bacteria 1516
85 Ga0466959_0072338 3300045049 Bacteria 2496
86 Ga0466967_0047543 3300045976 Bacteria 3741
87 Ga0495629_0053644 3300046459 Bacteria 2820
88 Ga0495651_0038223 3300046462 Bacteria 3737
89 Ga0495585_0097934 3300046492 Bacteria 1572
90 Ga0495594_0003603 3300046499 Bacteria 7963
91 Ga0495607_0128776 3300046501 Bacteria 1320
92 Ga0495630_0129916 3300046517 Bacteria 1913
93 Ga0495648_0219308 3300046524 Bacteria 939
94 Ga0495652_0149861 3300046529 Bacteria 1824
95 Ga0495640_0038102 3300046533 Bacteria 3384
96 Ga0495634_0097932 3300046642 Bacteria 1898
97 Ga0495611_0059433 3300046648 Bacteria 1735
98 Ga0495657_0089458 3300046675 Bacteria 1978
99 Ga0495657_0484925 3300046675 Bacteria 722
100 Ga0495670_0071729 3300046691 Bacteria 1754
101 Ga0495589_0016824 3300046794 Bacteria 3755
102 Ga0495636_0051747 3300047318 Bacteria 1722
103 Ga0495676_0005951 3300047321 Bacteria 11199
104 Ga0495687_028092 3300047443 Bacteria 2621
105 Ga0495675_0011086 3300047444 Bacteria 5651
106 Ga0495685_009638 3300047447 Bacteria 3230
107 Ga0495684_0123967 3300047471 Bacteria 1944
108 Ga0496108_0225523 3300048911 Bacteria 1629
109 Ga0496113_0400814 3300048916 Bacteria 1101
110 Ga0496117_0019671 3300048920 Bacteria 5534
111 Ga0496117_0030339 3300048920 Bacteria 4151
112 Ga0496118_0003411 3300048921 Bacteria 20085
113 Ga0501034_0073314 3300049571 Bacteria 3432
114 Ga0501038_0000345 3300049574 Bacteria 39843
115 Ga0501047_0015741 3300049581 Bacteria 7208
116 Ga0501048_0117112 3300049582 Bacteria 1882
117 Ga0501070_0160453 3300049586 Bacteria 1854
118 Ga0501070_0325689 3300049586 Bacteria 1249
119 Ga0501070_0515340 3300049586 Bacteria 960
120 Ga0501073_0155643 3300049589 Bacteria 1584
121 Ga0501235_041449 3300049669 Bacteria 1053
122 Ga0501080_0870960 3300049742 Bacteria 786
123 Ga0501035_0093989 3300049822 Bacteria 2637
124 Ga0501035_0198787 3300049822 Bacteria 1720
125 Ga0501044_0110729 3300049823 Bacteria 2754
126 Ga0501044_0359958 3300049823 Bacteria 1373
127 nmdc:mga0yw44_109639_c1 3300050492 Bacteria 1767
128 nmdc:mga06z11_14194_c1 3300050494 Bacteria 3523
129 nmdc:mga04h51_3633_c1 3300050495 Bacteria 3768
130 nmdc:mga07m45_59282_c1 3300050496 Bacteria 2166
131 nmdc:mga06r32_858360_c1 3300050510 Bacteria 866
132 Ga0466962_0094858 3300061719 Bacteria 1430
133 2785342703 2784746763 Bacteria 9783172
134 2547408097 2547132111 Bacteria 8013147
135 2554257831 2554235005 Bacteria 6457341
136 2643898515 2643221578 Bacteria 9213798
137 2643943467 2643221587 Bacteria 7586415
138 2644018194 2643221601 Bacteria 7493239
139 2644094584 2643221616 Bacteria 4066575
140 2644174232 2643221631 Bacteria 8168043
141 2644385686 2643221670 Bacteria 6497041
142 2644406431 2643221673 Bacteria 9196637
143 2644429882 2643221677 Bacteria 7584031
144 2644441183 2643221678 Bacteria 9540101
145 2644627981 2643221714 Bacteria 9015452
146 2760304975 2758568522 Bacteria 5953541
147 2784588576 2784132148 Bacteria 8627943
148 2808846539 2808606359 Bacteria 9866990
149 2812356163 2811994879 Bacteria 9313447
150 2819699544 2818991463 Bacteria 7948711
151 2819741061 2818991472 Bacteria 10089953
152 2852642113 2852635781 Bacteria 8251373
153 2855676555 2855670206 Bacteria 7120389
154 2855683395 2855676851 Bacteria 7063653
155 2857294989 2857288857 Bacteria 7189066
156 2858852153 2858848962 Bacteria 6963058
157 2858888331 2858882152 Bacteria 7230291
158 2858893246 2858888857 Bacteria 7060307
159 2858899089 2858895516 Bacteria 7378898
160 2862284439 2862281513 Bacteria 9621493
161 2862383268 2862382967 Bacteria 10317375
162 2863409443 2863404153 Bacteria 9672205
163 2869049279 2869048445 Bacteria 6875584
164 2869063833 2869061728 Bacteria 7112407
165 2869074570 2869068681 Bacteria 7205615
166 2880493983 2880489317 Bacteria 7096270
167 2912718988 2912715099 Bacteria 9460473
168 2912730019 2912723979 Bacteria 8557534
169 2918507321 2918501144 Bacteria 8668083
170 2929226942 2929226422 Bacteria 7248583
171 2946069695 2946064051 Bacteria 8957905
172 2946076817 2946072368 Bacteria 8999607
173 2995471639 2995463766 Bacteria 8577691
174 3003004534 3002998708 Bacteria 11715108
175 3006492960 3006486233 Bacteria 8157040
176 8001789947 8001781756 Bacteria 9586736
177 8003876854 8003870546 Bacteria 7396674
178 8008563733 8008558824 Bacteria 10610750
179 8025483188 8025478263 Bacteria 8209203
180 8048410342 8048406513 Bacteria 8936924
181 8054710066 8054704163 Bacteria 7247792
182 8054728281 8054727385 Bacteria 7558670
183 8054735328 8054734606 Bacteria 6947278
184 8056064955 8056060235 Bacteria 7259403
185 8056449472 8056447290 Bacteria 7680491
186 8057571781 8057568493 Bacteria 7221719
187 8057572107 8057568493 Bacteria 7221719
188 JGI25164J39214_1002536
189 JGI25406J46586_10005578
190 JGI25165J46597_1000014
191 JGI25165J46597_1000125
192 rootL2_10182887
193 rootH1_10072240
194 Ga0006562J51391_1171740
195 Ga0006562J51391_1171741
196 Ga0070683_100585296
197 Ga0070668_100075361
198 Ga0070709_10128107
199 Ga0070713_100149321
200 Ga0070701_10192639
201 Ga0070711_100113289
202 Ga0070663_100188143
203 Ga0070684_100114801
204 Ga0068859_100172897
205 Ga0081538_10193352
206 Ga0081539_10000241
207 Ga0070717_10089914
208 Ga0075368_10007951
209 Ga0075363_100006355
210 Ga0070716_100028719
211 Ga0075367_10006627
212 Ga0075370_10067714
213 Ga0075370_10142828
214 Ga0075431_100689269
215 Ga0097620_100172903
216 Ga0105245_10591879
217 Ga0105242_10378355
218 Ga0105246_10059007
219 Ga0157369_10646448
220 Ga0157369_10890441
221 Ga0182008_10005032
222 Ga0182006_1019791
223 Ga0182007_10001587
224 Ga0206353_11522431
225 Ga0207427_100039
226 Ga0209437_100441
227 Ga0209233_1000014
228 Ga0207426_1000547
229 Ga0207426_1010479
230 Ga0207692_10000757
231 Ga0207652_10293021
232 Ga0207664_10039142
233 Ga0207665_10008739
234 Ga0207668_10012261
235 Ga0209813_10003696
236 Ga0268265_10067767
237 Ga0307515_10060990
238 Ga0307508_10024117
239 Ga0307508_10043887
240 Ga0307508_10047705
241 Ga0307508_10087634
242 Ga0307516_10000645
243 Ga0307516_10052555
244 Ga0307406_10478338
245 Ga0307416_100096683
246 Ga0307416_101177060
247 Ga0307507_10309121
248 Ga0439436_0000679
249 Ga0439436_0002729
250 Ga0439439_0007385
251 Ga0439439_0014046
252 Ga0451797_0915784
253 Ga0451853_0294925
254 Ga0451853_2035290
255 Ga0439442_003644
256 Ga0439449_0001265
257 Ga0439449_0077137
258 Ga0439457_000011
259 Ga0439457_023010
260 Ga0439462_0016836
261 Ga0439462_0051663
262 Ga0450900_025363
263 Ga0466969_0166875
264 Ga0466972_0001614
265 Ga0466972_0186871
266 Ga0466965_0002186
267 Ga0466965_0002341
268 Ga0466966_0058968
269 Ga0466963_0173853
270 Ga0466971_0024144
271 Ga0466957_0148270
272 Ga0466959_0072338
273 Ga0466967_0047543
274 Ga0495629_0053644
275 Ga0495651_0038223
276 Ga0495585_0097934
277 Ga0495594_0003603
278 Ga0495607_0128776
279 Ga0495630_0129916
280 Ga0495648_0219308
281 Ga0495652_0149861
282 Ga0495640_0038102
283 Ga0495634_0097932
284 Ga0495611_0059433
285 Ga0495657_0089458
286 Ga0495657_0484925
287 Ga0495670_0071729
288 Ga0495589_0016824
289 Ga0495636_0051747
290 Ga0495676_0005951
291 Ga0495687_028092
292 Ga0495675_0011086
293 Ga0495685_009638
294 Ga0495684_0123967
295 Ga0496108_0225523
296 Ga0496113_0400814
297 Ga0496117_0019671
298 Ga0496117_0030339
299 Ga0496118_0003411
300 Ga0501034_0073314
301 Ga0501038_0000345
302 Ga0501047_0015741
303 Ga0501048_0117112
304 Ga0501070_0160453
305 Ga0501070_0325689
306 Ga0501070_0515340
307 Ga0501073_0155643
308 Ga0501235_041449
309 Ga0501080_0870960
310 Ga0501035_0093989
311 Ga0501035_0198787
312 Ga0501044_0110729
313 Ga0501044_0359958
314 nmdc:mga0yw44_109639_c1
315 nmdc:mga06z11_14194_c1
316 nmdc:mga04h51_3633_c1
317 nmdc:mga07m45_59282_c1
318 nmdc:mga06r32_858360_c1
319 Ga0466962_0094858
320 2785342703
321 2547408097
322 2554257831
323 2643898515
324 2643943467
325 2644018194
326 2644094584
327 2644174232
328 2644385686
329 2644406431
330 2644429882
331 2644441183
332 2644627981
333 2760304975
334 2784588576
335 2808846539
336 2812356163
337 2819699544
338 2819741061
339 2852642113
340 2855676555
341 2855683395
342 2857294989
343 2858852153
344 2858888331
345 2858893246
346 2858899089
347 2862284439
348 2862383268
349 2863409443
350 2869049279
351 2869063833
352 2869074570
353 2880493983
354 2912718988
355 2912730019
356 2918507321
357 2929226942
358 2946069695
359 2946076817
360 2995471639
361 3003004534
362 3006492960
363 8001789947
364 8003876854
365 8008563733
366 8025483188
367 8048410342
368 8054710066
369 8054728281
370 8054735328
371 8056064955
372 8056449472
373 8057571781
374 8057572107

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13936

HTH_38

Helix-turn-helix domain

1

41

0.98

PF01047

MarR

MarR family

105

159

0.92

PF12802

MarR_2

MarR family

99

158

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4awx-assembly1.cif.gz_B moonlighting functions of feoc in the regulation of ferrous iron transport in feo 0.9081 112 170
7ne9-assembly1.cif.gz_CCC a single sensor controls large variations in zinc quotas in a marine cyanobacterium 0.8897 107 170
7ne9-assembly1.cif.gz_DDD a single sensor controls large variations in zinc quotas in a marine cyanobacterium 0.875 107 170
5k5q-assembly1.cif.gz_C structure of aspa-dna complex: novel centromere bindng protein-centromere complex 0.8698 109 171
6s1k-assembly1.cif.gz_I e. coli core signaling unit, carrying qqqq receptor mutation 0.8692 172 238
ID Description Score Start End Superfamily
2vxzA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9205 111 170 1.10.10.10
4awxB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9081 112 170 1.10.10.10
af_Q58793_322_389_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9064 109 175 1.10.10.10
af_O94663_173_242_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9027 108 170 1.10.10.10
af_P32910_88_152_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9027 111 170 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2S9W7A2-F1-model_v4 deleted 0.9918 2 66
AF-A0A545SXN0-F1-model_v4 IS30 family transposase 0.9527 1 66 GO:0003677
GO:0004803
GO:0005829
GO:0006313
GO:0015074
AF-A0A2M9W6R6-F1-model_v4 IS30 family transposase 0.9498 1 66 GO:0004803
GO:0005829
GO:0032196
AF-A0A1I1SPF1-F1-model_v4 Helix-turn-helix domain-containing protein 0.9493 1 66 GO:0004803
GO:0005829
GO:0032196
AF-A0A0W0XTB9-F1-model_v4 IS30B/C/D transposase 0.9472 1 66 GO:0003676
GO:0004803
GO:0005829
GO:0006310
GO:0015074
GO:0032196

Map