F287588

General Info

Members Datasets Scaffolds Average Seq Length
187 140 374 399

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10315914|Ga0114129_103159142
Length 437
Sequence VTRPAGRHALVFVVITVLIDIIGFGLILPVLPRLLVELTGDTVNQAAIDGGWLAFVYAVMQFVCAPLLGNLSDRYGRRPVLLFAVGALGIDYIVMGFAPTLAWLFLGRTIAGIAGASFTPAYAYVADVSPPEKRAQSFGLISAAFGVGFILGPALGGLLGQLGTRTPFFAAAALSLVNLVYGTFVLPESLPPEARRPFEWRRANPLGTLLQMRKHPVVLGLLGALFLWMIAHQVMPSTWTFYTKFRFGWSEAMIGASLAAAGVVMAVSQATLMRVLVPRLGERRTALTGIAVASVGYFGYGIASASWMMFAWLATWFLGALVMPSTNALMSHRVEKSAQGELQGAVASLFGLSSIVGPPLMTQLFGRFSAPDAPLQLPGAAFFASTLLAWTSFALYYRRHGTSPPLARIPLAPASAGSPARECRRRPPPSARRVPLR

Samples

Sample ID Description Type Environment
1 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
60 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
61 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
76 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
77 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
78 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
79 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
80 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
81 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
82 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
85 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
86 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
87 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
88 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
89 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
90 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
91 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
92 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
93 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
94 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
95 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
96 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
97 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
98 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
99 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
100 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
101 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
102 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
103 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
104 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
105 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
106 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
107 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
108 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
109 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
110 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
111 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
112 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
113 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
114 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
115 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
116 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
126 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
129 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
130 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
131 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
132 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
133 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
134 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
135 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
136 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
137 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
138 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
139 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
140 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.33
Metatranscriptomes 0
Isolates 2.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.14
Nodule 0
Rhizoplane 4.81
Rhizosphere 89.84
Stem 0
Stem Tuber 0
Unclassified 4.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10315914 3300009147 Bacteria 2078
2 JGI24739J22299_10014876 3300001989 Bacteria 2829
3 JGI24735J21928_10000028 3300002067 Bacteria 83192
4 rootH1_10011210 3300003323 Bacteria 23390
5 Ga0070682_100037964 3300005337 Bacteria 2952
6 Ga0068868_100014620 3300005338 Bacteria 5789
7 Ga0068868_100078926 3300005338 Bacteria 2636
8 Ga0070675_100153509 3300005354 Bacteria 1975
9 Ga0070675_100175632 3300005354 Bacteria 1850
10 Ga0070673_100290389 3300005364 Bacteria 1437
11 Ga0070688_100040621 3300005365 Bacteria 2852
12 Ga0070667_100003492 3300005367 Bacteria 13398
13 Ga0070709_10096272 3300005434 Bacteria 1962
14 Ga0070711_100000800 3300005439 Bacteria 16454
15 Ga0070705_100079467 3300005440 Bacteria 2009
16 Ga0070700_100184576 3300005441 Bacteria 1454
17 Ga0070694_100003164 3300005444 Bacteria 9816
18 Ga0070694_100043529 3300005444 Bacteria 3002
19 Ga0070708_100000557 3300005445 Bacteria 27909
20 Ga0070708_100014862 3300005445 Bacteria 6416
21 Ga0070708_100018758 3300005445 Bacteria 5793
22 Ga0070708_100035476 3300005445 Bacteria 4345
23 Ga0070681_10076510 3300005458 Bacteria 3305
24 Ga0068867_100028475 3300005459 Bacteria 4023
25 Ga0070685_10012315 3300005466 Bacteria 4491
26 Ga0070707_100108976 3300005468 Bacteria 2686
27 Ga0070698_100167369 3300005471 Bacteria 2140
28 Ga0070698_100287250 3300005471 Bacteria 1576
29 Ga0070699_100000485 3300005518 Bacteria 37796
30 Ga0070699_100001946 3300005518 Bacteria 18667
31 Ga0070697_100186376 3300005536 Bacteria 1760
32 Ga0070695_100097206 3300005545 Bacteria 1977
33 Ga0070704_100122874 3300005549 Unclassified 1998
34 Ga0070704_100148237 3300005549 Bacteria 1841
35 Ga0068855_100002065 3300005563 Bacteria 24885
36 Ga0070664_100013745 3300005564 Bacteria 6597
37 Ga0068856_100021081 3300005614 Bacteria 6334
38 Ga0068859_100036368 3300005617 Bacteria 4944
39 Ga0068863_100014549 3300005841 Bacteria 7574
40 Ga0068858_100101735 3300005842 Bacteria 2680
41 Ga0068860_100007183 3300005843 Bacteria 11140
42 Ga0068862_100011985 3300005844 Bacteria 7162
43 Ga0068862_100094220 3300005844 Unclassified 2612
44 Ga0075366_10000412 3300006195 Bacteria 19976
45 Ga0068871_100006878 3300006358 Bacteria 8099
46 Ga0075428_100011861 3300006844 Bacteria 9695
47 Ga0075428_100018443 3300006844 Bacteria 7716
48 Ga0075428_100052263 3300006844 Bacteria 4479
49 Ga0075428_100094773 3300006844 Bacteria 3254
50 Ga0075430_100028331 3300006846 Bacteria 4759
51 Ga0075431_100154115 3300006847 Bacteria 2365
52 Ga0075433_10018611 3300006852 Bacteria 5777
53 Ga0075433_10031304 3300006852 Bacteria 4547
54 Ga0075433_10082140 3300006852 Bacteria 2842
55 Ga0075434_100014343 3300006871 Bacteria 7575
56 Ga0075429_100002164 3300006880 Bacteria 16400
57 Ga0075429_100120763 3300006880 Unclassified 2291
58 Ga0075436_100007728 3300006914 Bacteria 7349
59 Ga0075436_100038249 3300006914 Bacteria 3311
60 Ga0097620_100036367 3300006931 Bacteria 4944
61 Ga0075435_100115804 3300007076 Bacteria 2232
62 Ga0099795_10011959 3300007788 Unclassified 2615
63 Ga0111539_10049111 3300009094 Bacteria 5035
64 Ga0111539_10299485 3300009094 Bacteria 1872
65 Ga0105245_10010163 3300009098 Bacteria 8194
66 Ga0105247_10016443 3300009101 Bacteria 4434
67 Ga0114129_10011919 3300009147 Bacteria 12363
68 Ga0114129_10014040 3300009147 Bacteria 11410
69 Ga0114129_10073587 3300009147 Bacteria 4761
70 Ga0114129_10123530 3300009147 Bacteria 3560
71 Ga0114129_10367294 3300009147 Unclassified 1903
72 Ga0105248_10017401 3300009177 Bacteria 7925
73 Ga0157371_10174120 3300013102 Bacteria 1538
74 Ga0157369_10139809 3300013105 Bacteria 2563
75 Ga0157374_10015013 3300013296 Bacteria 6789
76 Ga0157378_10009499 3300013297 Bacteria 8471
77 Ga0163162_10006842 3300013306 Bacteria 11064
78 Ga0163162_10043377 3300013306 Bacteria 4503
79 Ga0157372_10003703 3300013307 Bacteria 16427
80 Ga0157372_10006551 3300013307 Bacteria 12388
81 Ga0157375_10017864 3300013308 Bacteria 6415
82 Ga0157375_10077322 3300013308 Bacteria 3357
83 Ga0163163_10001826 3300014325 Bacteria 17970
84 Ga0157380_10001674 3300014326 Bacteria 14634
85 Ga0157380_10074805 3300014326 Bacteria 2751
86 Ga0157379_10015945 3300014968 Bacteria 6605
87 Ga0157376_10003856 3300014969 Bacteria 10365
88 Ga0207680_10012925 3300025903 Bacteria 4267
89 Ga0207663_10000846 3300025916 Bacteria 13893
90 Ga0207646_10036805 3300025922 Bacteria 4416
91 Ga0207646_10103143 3300025922 Bacteria 2558
92 Ga0207646_10250668 3300025922 Bacteria 1599
93 Ga0207659_10065770 3300025926 Bacteria 2628
94 Ga0207687_10012548 3300025927 Bacteria 5535
95 Ga0207711_10007083 3300025941 Bacteria 9399
96 Ga0207667_10036719 3300025949 Bacteria 5246
97 Ga0207658_10062011 3300025986 Bacteria 2796
98 Ga0207703_10134077 3300026035 Bacteria 2142
99 Ga0207708_10006066 3300026075 Bacteria 8962
100 Ga0207708_10063449 3300026075 Bacteria 2822
101 Ga0207648_10218676 3300026089 Bacteria 1693
102 Ga0207675_100026447 3300026118 Bacteria 5402
103 Ga0207675_100155582 3300026118 Bacteria 2178
104 Ga0209999_1003001 3300027543 Bacteria 3001
105 Ga0268264_10011637 3300028381 Bacteria 7256
106 Ga0307517_10035433 3300028786 Bacteria 5651
107 Ga0307515_10002439 3300028794 Bacteria 40495
108 Ga0307508_10000111 3300031616 Bacteria 96733
109 Ga0307507_10004814 3300033179 Bacteria 23249
110 Ga0439436_0002047 3300041404 Bacteria 6007
111 Ga0439457_000097 3300042014 Bacteria 20341
112 Ga0439462_0014002 3300042015 Unclassified 2058
113 Ga0466957_0000101 3300044842 Bacteria 34646
114 Ga0466957_0000901 3300044842 Bacteria 15238
115 Ga0451576_0175144 3300045051 Bacteria 2239
116 Ga0451576_0277936 3300045051 Unclassified 1751
117 Ga0495603_0026723 3300046455 Bacteria 3486
118 Ga0495629_0016209 3300046459 Bacteria 5349
119 Ga0495650_0000036 3300046471 Bacteria 400633
120 Ga0495650_0000192 3300046471 Bacteria 131943
121 Ga0495582_0001002 3300046473 Bacteria 15830
122 Ga0495585_0000246 3300046492 Bacteria 56090
123 Ga0495585_0002023 3300046492 Bacteria 15008
124 Ga0495594_0011498 3300046499 Bacteria 4601
125 Ga0495583_0000535 3300046506 Bacteria 53748
126 Ga0495583_0033905 3300046506 Bacteria 2451
127 Ga0495606_0000008 3300046507 Bacteria 321373
128 Ga0495610_0000757 3300046512 Bacteria 30503
129 Ga0495616_0008808 3300046513 Bacteria 5940
130 Ga0495648_0000390 3300046524 Bacteria 48133
131 Ga0495648_0049418 3300046524 Bacteria 2578
132 Ga0495652_0202574 3300046529 Bacteria 1505
133 Ga0495586_0001536 3300046535 Bacteria 12734
134 Ga0495586_0048091 3300046535 Unclassified 2304
135 Ga0495609_0006629 3300046538 Bacteria 5880
136 Ga0495609_0085626 3300046538 Bacteria 1374
137 Ga0495633_0000233 3300046558 Bacteria 67958
138 Ga0495633_0006246 3300046558 Bacteria 7111
139 Ga0495668_0000044 3300046616 Bacteria 227585
140 Ga0495625_0000379 3300046660 Bacteria 67828
141 Ga0495625_0000772 3300046660 Bacteria 44536
142 Ga0495625_0003422 3300046660 Bacteria 15846
143 Ga0495635_0000529 3300046663 Bacteria 24243
144 Ga0495661_0001087 3300046665 Bacteria 23875
145 Ga0495661_0023122 3300046665 Bacteria 4039
146 Ga0495647_0003872 3300046681 Bacteria 4826
147 Ga0495658_0000016 3300046683 Bacteria 94726
148 Ga0495669_0001459 3300046684 Bacteria 9747
149 Ga0495613_0006520 3300046689 Bacteria 8723
150 Ga0495649_0000010 3300046694 Bacteria 430552
151 Ga0495660_0019498 3300046810 Bacteria 3895
152 Ga0495581_0000713 3300047315 Bacteria 17511
153 Ga0495680_0000165 3300047322 Bacteria 68296
154 Ga0495687_009043 3300047443 Bacteria 5615
155 Ga0495677_0021728 3300047445 Bacteria 2326
156 Ga0495614_0000030 3300048089 Bacteria 41355
157 Ga0496104_0028545 3300048907 Bacteria 5171
158 Ga0496105_0017527 3300048908 Bacteria 5745
159 Ga0496107_0119389 3300048910 Bacteria 1942
160 Ga0496108_0009300 3300048911 Bacteria 7955
161 Ga0496109_0007034 3300048912 Bacteria 9493
162 Ga0496110_0005138 3300048913 Bacteria 10226
163 Ga0496111_0289664 3300048914 Bacteria 1214
164 Ga0496114_0120024 3300048917 Bacteria 2260
165 Ga0501033_0020406 3300049570 Bacteria 5005
166 Ga0501034_0227258 3300049571 Bacteria 1816
167 Ga0501047_0303900 3300049581 Bacteria 1437
168 Ga0501257_007833 3300049686 Bacteria 2392
169 Ga0501225_0001692 3300049705 Bacteria 6895
170 nmdc:mga05p37_174125_c1 3300050507 Unclassified 2623
171 nmdc:mga05p37_368760_c1 3300050507 Bacteria 1686
172 nmdc:mga0qj67_150770_c1 3300050509 Bacteria 1886
173 nmdc:mga08y16_254277_c1 3300050511 Bacteria 1815
174 nmdc:mga08y16_289236_c1 3300050511 Bacteria 1690
175 nmdc:mga08y16_5653_c1 3300050511 Bacteria 13101
176 nmdc:mga0n895_163367_c1 3300050512 Bacteria 2258
177 nmdc:mga0n895_483534_c1 3300050512 Bacteria 1248
178 nmdc:mga08x19_5041_c1 3300050514 Bacteria 7813
179 Ga0495619_0003493 3300053085 Bacteria 10140
180 Ga0500646_0007067 3300053090 Bacteria 2863
181 Ga0500603_008289 3300053150 Bacteria 2301
182 Ga0500616_0037252 3300053153 Bacteria 2634
183 2599480999 2599185184 Bacteria 6430550
184 2852623872 2852623160 Bacteria 4376875
185 2884937224 2884933994 Bacteria 4535041
186 2928150182 2928147474 Bacteria 6512076
187 2932088251 2932082852 Bacteria 6563563
188 Ga0114129_10315914
189 JGI24739J22299_10014876
190 JGI24735J21928_10000028
191 rootH1_10011210
192 Ga0070682_100037964
193 Ga0068868_100014620
194 Ga0068868_100078926
195 Ga0070675_100153509
196 Ga0070675_100175632
197 Ga0070673_100290389
198 Ga0070688_100040621
199 Ga0070667_100003492
200 Ga0070709_10096272
201 Ga0070711_100000800
202 Ga0070705_100079467
203 Ga0070700_100184576
204 Ga0070694_100003164
205 Ga0070694_100043529
206 Ga0070708_100000557
207 Ga0070708_100014862
208 Ga0070708_100018758
209 Ga0070708_100035476
210 Ga0070681_10076510
211 Ga0068867_100028475
212 Ga0070685_10012315
213 Ga0070707_100108976
214 Ga0070698_100167369
215 Ga0070698_100287250
216 Ga0070699_100000485
217 Ga0070699_100001946
218 Ga0070697_100186376
219 Ga0070695_100097206
220 Ga0070704_100122874
221 Ga0070704_100148237
222 Ga0068855_100002065
223 Ga0070664_100013745
224 Ga0068856_100021081
225 Ga0068859_100036368
226 Ga0068863_100014549
227 Ga0068858_100101735
228 Ga0068860_100007183
229 Ga0068862_100011985
230 Ga0068862_100094220
231 Ga0075366_10000412
232 Ga0068871_100006878
233 Ga0075428_100011861
234 Ga0075428_100018443
235 Ga0075428_100052263
236 Ga0075428_100094773
237 Ga0075430_100028331
238 Ga0075431_100154115
239 Ga0075433_10018611
240 Ga0075433_10031304
241 Ga0075433_10082140
242 Ga0075434_100014343
243 Ga0075429_100002164
244 Ga0075429_100120763
245 Ga0075436_100007728
246 Ga0075436_100038249
247 Ga0097620_100036367
248 Ga0075435_100115804
249 Ga0099795_10011959
250 Ga0111539_10049111
251 Ga0111539_10299485
252 Ga0105245_10010163
253 Ga0105247_10016443
254 Ga0114129_10011919
255 Ga0114129_10014040
256 Ga0114129_10073587
257 Ga0114129_10123530
258 Ga0114129_10367294
259 Ga0105248_10017401
260 Ga0157371_10174120
261 Ga0157369_10139809
262 Ga0157374_10015013
263 Ga0157378_10009499
264 Ga0163162_10006842
265 Ga0163162_10043377
266 Ga0157372_10003703
267 Ga0157372_10006551
268 Ga0157375_10017864
269 Ga0157375_10077322
270 Ga0163163_10001826
271 Ga0157380_10001674
272 Ga0157380_10074805
273 Ga0157379_10015945
274 Ga0157376_10003856
275 Ga0207680_10012925
276 Ga0207663_10000846
277 Ga0207646_10036805
278 Ga0207646_10103143
279 Ga0207646_10250668
280 Ga0207659_10065770
281 Ga0207687_10012548
282 Ga0207711_10007083
283 Ga0207667_10036719
284 Ga0207658_10062011
285 Ga0207703_10134077
286 Ga0207708_10006066
287 Ga0207708_10063449
288 Ga0207648_10218676
289 Ga0207675_100026447
290 Ga0207675_100155582
291 Ga0209999_1003001
292 Ga0268264_10011637
293 Ga0307517_10035433
294 Ga0307515_10002439
295 Ga0307508_10000111
296 Ga0307507_10004814
297 Ga0439436_0002047
298 Ga0439457_000097
299 Ga0439462_0014002
300 Ga0466957_0000101
301 Ga0466957_0000901
302 Ga0451576_0175144
303 Ga0451576_0277936
304 Ga0495603_0026723
305 Ga0495629_0016209
306 Ga0495650_0000036
307 Ga0495650_0000192
308 Ga0495582_0001002
309 Ga0495585_0000246
310 Ga0495585_0002023
311 Ga0495594_0011498
312 Ga0495583_0000535
313 Ga0495583_0033905
314 Ga0495606_0000008
315 Ga0495610_0000757
316 Ga0495616_0008808
317 Ga0495648_0000390
318 Ga0495648_0049418
319 Ga0495652_0202574
320 Ga0495586_0001536
321 Ga0495586_0048091
322 Ga0495609_0006629
323 Ga0495609_0085626
324 Ga0495633_0000233
325 Ga0495633_0006246
326 Ga0495668_0000044
327 Ga0495625_0000379
328 Ga0495625_0000772
329 Ga0495625_0003422
330 Ga0495635_0000529
331 Ga0495661_0001087
332 Ga0495661_0023122
333 Ga0495647_0003872
334 Ga0495658_0000016
335 Ga0495669_0001459
336 Ga0495613_0006520
337 Ga0495649_0000010
338 Ga0495660_0019498
339 Ga0495581_0000713
340 Ga0495680_0000165
341 Ga0495687_009043
342 Ga0495677_0021728
343 Ga0495614_0000030
344 Ga0496104_0028545
345 Ga0496105_0017527
346 Ga0496107_0119389
347 Ga0496108_0009300
348 Ga0496109_0007034
349 Ga0496110_0005138
350 Ga0496111_0289664
351 Ga0496114_0120024
352 Ga0501033_0020406
353 Ga0501034_0227258
354 Ga0501047_0303900
355 Ga0501257_007833
356 Ga0501225_0001692
357 nmdc:mga05p37_174125_c1
358 nmdc:mga05p37_368760_c1
359 nmdc:mga0qj67_150770_c1
360 nmdc:mga08y16_254277_c1
361 nmdc:mga08y16_289236_c1
362 nmdc:mga08y16_5653_c1
363 nmdc:mga0n895_163367_c1
364 nmdc:mga0n895_483534_c1
365 nmdc:mga08x19_5041_c1
366 Ga0495619_0003493
367 Ga0500646_0007067
368 Ga0500603_008289
369 Ga0500616_0037252
370 2599480999
371 2852623872
372 2884937224
373 2928150182
374 2932088251

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00083

Sugar_tr

Sugar (and other) transporter

35

191

0.92

PF07690

MFS_1

Major Facilitator Superfamily

13

276

0.89

PF12832

MFS_1_like

MFS_1 like family

183

373

0.85

PF12832

MFS_1_like

MFS_1 like family

40

171

0.85

PF07690

MFS_1

Major Facilitator Superfamily

247

430

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
7lo7-assembly1.cif.gz_Z nora in complex with fab25 0.9012 11 408
6s4m-assembly1.cif.gz_A crystal structure of the human organic anion transporter mfsd10 (tetran) 0.8955 9 399
7lo7-assembly1.cif.gz_Z nora in complex with fab25 0.8941 11 408
7lo8-assembly1.cif.gz_Z nora in complex with fab36 0.883 10 408
7lo8-assembly1.cif.gz_Z nora in complex with fab36 0.8763 10 408
ID Description Score Start End Superfamily
af_A4IBH1_11_256_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9272 11 192 1.20.1250.20
af_P25744_212_408_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9233 11 189 1.20.1250.20
af_Q8R090_126_283_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9209 46 189 1.20.1250.20
af_Q58713_262_398_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9191 56 188 1.20.1250.20
af_Q4D047_16_187_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9091 18 185 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A327T5L7-F1-model_v4 DHA1 family tetracycline resistance protein-like MFS transporter 0.9873 58 405 GO:0005886
GO:0022857
AF-A0A520C4Z9-F1-model_v4 MFS transporter 0.9815 95 405 GO:0005886
GO:0006811
GO:0022857
AF-A0A5C7SGA9-F1-model_v4 deleted 0.98 81 401
AF-A0A257QY11-F1-model_v4 Tetracycline resistance MFS efflux pump 0.978 14 404 GO:0005886
GO:0022857
AF-A0A5C7S1C5-F1-model_v4 MFS transporter 0.977 8 402 GO:0005886
GO:0022857

Map