F286808

General Info

Members Datasets Scaffolds Average Seq Length
186 134 372 280

Family's Representative Sequence

Representative Sequence 3300054114|Ga0501084_0285612|Ga0501084_0285612_314_1303
Length 329
Sequence VGGAALTANDLSSVTSIGDRRDTLERALAHVRRAALRRAEPAVHDLPMSFTLSDNSHGAAGIRVLRVLRRGDRHEVRDLEVDIALAGDFRATHVAGDNRDILPADSMKNAVYALAGRHGGGEVEEFALALTHHFLLEQDAVTAVTVTVREHRWARIAISGRPHDHAFSRGGDGRRVARVRRTRDALVVEAGIDELALLKTKHSGFQGYLRDRYTTLAETSDRVLATVLEAHWRYGWAEVPFGLHWQQVRQVILGTFAEHDSRSVQHTLYAMAQAALEQCPPIAEIRFRLAHRRHEPADLTRFGLENDNEVLVAAEGVGIIEAVVRREDI

Samples

Sample ID Description Type Environment
1 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
33 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
34 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
57 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
58 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
80 3300028023 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 Metagenome Rhizosphere
81 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
84 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
85 3300030879 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
86 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
87 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
90 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
91 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
92 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
93 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
94 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
95 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
96 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
97 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
100 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
101 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
102 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
103 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
104 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
105 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
106 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
107 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
108 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
109 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
110 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
111 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
112 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
113 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
114 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
115 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
116 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
117 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
118 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
119 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
120 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
121 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
122 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
123 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
124 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
125 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
126 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
131 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
132 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.92
Metatranscriptomes 1.08
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.76
Rhizosphere 94.09
Stem 0
Stem Tuber 0
Unclassified 13.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501084_0285612 3300054114 Unclassified 1393
2 Ga0065712_10118565 3300005290 Bacteria 1704
3 Ga0070690_100105238 3300005330 Bacteria 1875
4 Ga0070690_100337613 3300005330 Bacteria 1090
5 Ga0070689_100085054 3300005340 Bacteria 2487
6 Ga0070669_100041107 3300005353 Bacteria 3362
7 Ga0070671_100038412 3300005355 Bacteria 3974
8 Ga0070673_100093075 3300005364 Bacteria 2468
9 Ga0070709_10001451 3300005434 Bacteria 12777
10 Ga0070710_10182514 3300005437 Bacteria 1315
11 Ga0070711_100044413 3300005439 Bacteria 3016
12 Ga0070705_100084624 3300005440 Bacteria 1958
13 Ga0070708_100022811 3300005445 Bacteria 5314
14 Ga0068867_100388785 3300005459 Bacteria 1174
15 Ga0070706_100340771 3300005467 Bacteria 1398
16 Ga0070706_100493102 3300005467 Bacteria 1140
17 Ga0070707_100004076 3300005468 Bacteria 13716
18 Ga0070707_100094929 3300005468 Bacteria 2888
19 Ga0070698_100043040 3300005471 Bacteria 4631
20 Ga0070698_100077691 3300005471 Bacteria 3319
21 Ga0070698_100079578 3300005471 Bacteria 3274
22 Ga0070699_100000017 3300005518 Bacteria 201366
23 Ga0070699_100045306 3300005518 Bacteria 3806
24 Ga0070699_100067493 3300005518 Unclassified 3106
25 Ga0070697_100001570 3300005536 Bacteria 17415
26 Ga0068853_100026374 3300005539 Bacteria 4879
27 Ga0070672_100031902 3300005543 Bacteria 3971
28 Ga0070665_100207520 3300005548 Bacteria 1960
29 Ga0070704_100001483 3300005549 Bacteria 12608
30 Ga0068857_100363625 3300005577 Bacteria 1341
31 Ga0068854_100000158 3300005578 Bacteria 46506
32 Ga0068859_100022395 3300005617 Bacteria 6335
33 Ga0068861_100050702 3300005719 Bacteria 3148
34 Ga0068863_100002787 3300005841 Bacteria 17313
35 Ga0068858_100122938 3300005842 Bacteria 2429
36 Ga0068860_100032637 3300005843 Bacteria 5001
37 Ga0068860_100184149 3300005843 Bacteria 2019
38 Ga0068862_100006939 3300005844 Bacteria 9396
39 Ga0068862_100466500 3300005844 Bacteria 1193
40 Ga0081455_10099554 3300005937 Bacteria 2338
41 Ga0081455_10152210 3300005937 Bacteria 1782
42 Ga0081455_10227518 3300005937 Bacteria 1379
43 Ga0070717_10003427 3300006028 Bacteria 11341
44 Ga0070716_100083790 3300006173 Bacteria 1910
45 Ga0070712_100021942 3300006175 Bacteria 4199
46 Ga0070712_100054102 3300006175 Unclassified 2805
47 Ga0070712_100120655 3300006175 Bacteria 1972
48 Ga0068871_100207884 3300006358 Bacteria 1692
49 Ga0075428_100009885 3300006844 Bacteria 10598
50 Ga0075428_100067842 3300006844 Bacteria 3903
51 Ga0075430_100376872 3300006846 Unclassified 1171
52 Ga0075431_100201006 3300006847 Bacteria 2039
53 Ga0075433_10028678 3300006852 Bacteria 4734
54 Ga0075433_10318284 3300006852 Unclassified 1377
55 Ga0075433_10450717 3300006852 Unclassified 1134
56 Ga0075434_100205071 3300006871 Unclassified 1992
57 Ga0075429_100005814 3300006880 Bacteria 10640
58 Ga0075429_100190127 3300006880 Bacteria 1799
59 Ga0075436_100001555 3300006914 Bacteria 15654
60 Ga0075436_100129246 3300006914 Bacteria 1771
61 Ga0097620_100022395 3300006931 Bacteria 6335
62 Ga0075435_100505568 3300007076 Unclassified 1045
63 Ga0099794_10046202 3300007265 Bacteria 2085
64 Ga0105240_10012010 3300009093 Bacteria 12004
65 Ga0111539_10018716 3300009094 Bacteria 8575
66 Ga0114129_10007656 3300009147 Bacteria 15374
67 Ga0114129_10011738 3300009147 Bacteria 12466
68 Ga0114129_10024695 3300009147 Bacteria 8518
69 Ga0114129_10033643 3300009147 Bacteria 7242
70 Ga0114129_10050725 3300009147 Bacteria 5828
71 Ga0114129_10065375 3300009147 Bacteria 5076
72 Ga0114129_10189414 3300009147 Bacteria 2794
73 Ga0105242_10057943 3300009176 Unclassified 3174
74 Ga0105248_10008753 3300009177 Bacteria 11114
75 Ga0105248_10015671 3300009177 Bacteria 8352
76 Ga0105248_10123944 3300009177 Bacteria 2915
77 Ga0105249_10135424 3300009553 Bacteria 2356
78 Ga0157378_10000605 3300013297 Bacteria 33671
79 Ga0157378_10096857 3300013297 Bacteria 2688
80 Ga0157378_10262874 3300013297 Bacteria 1657
81 Ga0163162_10215585 3300013306 Unclassified 2050
82 Ga0163163_10372098 3300014325 Bacteria 1486
83 Ga0157379_10104293 3300014968 Bacteria 2545
84 Ga0157379_10250721 3300014968 Bacteria 1607
85 Ga0157376_10000016 3300014969 Bacteria 271570
86 Ga0157376_10000468 3300014969 Bacteria 25990
87 Ga0228598_1001529 3300024227 Bacteria 5074
88 Ga0207692_10023982 3300025898 Bacteria 2829
89 Ga0207685_10023174 3300025905 Unclassified 2110
90 Ga0207707_10171647 3300025912 Bacteria 1895
91 Ga0207695_10012721 3300025913 Bacteria 10076
92 Ga0207693_10024478 3300025915 Unclassified 4790
93 Ga0207693_10027059 3300025915 Bacteria 4535
94 Ga0207693_10060967 3300025915 Unclassified 2955
95 Ga0207693_10130987 3300025915 Unclassified 1972
96 Ga0207693_10150668 3300025915 Bacteria 1829
97 Ga0207663_10216120 3300025916 Bacteria 1392
98 Ga0207657_10138596 3300025919 Bacteria 1989
99 Ga0207646_10004443 3300025922 Bacteria 15219
100 Ga0207681_10002244 3300025923 Bacteria 12282
101 Ga0207700_10151031 3300025928 Bacteria 1919
102 Ga0207664_10206019 3300025929 Bacteria 1700
103 Ga0207686_10195626 3300025934 Unclassified 1444
104 Ga0207665_10007375 3300025939 Bacteria 7270
105 Ga0207665_10070085 3300025939 Bacteria 2391
106 Ga0207691_10070209 3300025940 Bacteria 3163
107 Ga0207640_10000174 3300025981 Bacteria 46538
108 Ga0207658_10056858 3300025986 Bacteria 2905
109 Ga0207639_10000281 3300026041 Bacteria 36552
110 Ga0207641_10000705 3300026088 Bacteria 35934
111 Ga0207641_10007893 3300026088 Bacteria 8826
112 Ga0207674_10429669 3300026116 Bacteria 1276
113 Ga0209588_1010295 3300027671 Bacteria 2810
114 Ga0209588_1025051 3300027671 Bacteria 1886
115 Ga0207428_10013624 3300027907 Bacteria 7093
116 Ga0265354_1000482 3300028016 Bacteria 6926
117 Ga0265354_1000612 3300028016 Bacteria 6019
118 Ga0265357_1000226 3300028023 Bacteria 2766
119 Ga0268265_10003019 3300028380 Bacteria 12280
120 Ga0268265_10352471 3300028380 Bacteria 1344
121 Ga0268264_10307115 3300028381 Bacteria 1495
122 Ga0265338_10074491 3300028800 Bacteria 2887
123 Ga0265770_1004220 3300030878 Unclassified 1958
124 Ga0265765_1000148 3300030879 Bacteria 4364
125 Ga0307405_10096096 3300031731 Bacteria 1975
126 Ga0307406_10106770 3300031901 Bacteria 1919
127 Ga0307416_100447276 3300032002 Bacteria 1344
128 Ga0307415_100539439 3300032126 Bacteria 1027
129 Ga0307510_10041580 3300033180 Bacteria 5022
130 Ga0316212_1006626 3300033547 Unclassified 1676
131 Ga0373934_0005841 3300035086 Bacteria 4555
132 Ga0373934_0030326 3300035086 Unclassified 2115
133 Ga0373923_0103912 3300035111 Bacteria 1255
134 Ga0373954_0001134 3300035118 Bacteria 10688
135 Ga0373943_0083241 3300035170 Bacteria 1644
136 Ga0373943_0126221 3300035170 Bacteria 1365
137 Ga0373955_0012322 3300035172 Unclassified 4109
138 Ga0373937_0036546 3300036401 Unclassified 4476
139 Ga0373925_0144215 3300037068 Unclassified 1866
140 Ga0436364_0300703 3300037853 Bacteria 1194
141 Ga0436365_1163831 3300039437 Bacteria 2682
142 Ga0495641_0041799 3300046461 Bacteria 2128
143 Ga0495580_0000989 3300046472 Bacteria 24941
144 Ga0495580_0085339 3300046472 Unclassified 2199
145 Ga0495582_0000279 3300046473 Bacteria 28597
146 Ga0495582_0044345 3300046473 Bacteria 2449
147 Ga0495662_0042177 3300046476 Bacteria 2202
148 Ga0495630_0072810 3300046517 Bacteria 2587
149 Ga0495666_0098773 3300046526 Bacteria 1376
150 Ga0495665_0061306 3300046531 Bacteria 1986
151 Ga0495640_0044123 3300046533 Bacteria 3101
152 Ga0495587_0010274 3300046536 Bacteria 5967
153 Ga0495667_0025736 3300046559 Bacteria 3964
154 Ga0495623_0006087 3300046679 Bacteria 7849
155 Ga0495658_0022926 3300046683 Unclassified 3308
156 Ga0495658_0030103 3300046683 Bacteria 2945
157 Ga0495670_0217464 3300046691 Bacteria 1015
158 Ga0495600_0184133 3300046809 Bacteria 1345
159 Ga0495604_0000856 3300047317 Bacteria 25426
160 Ga0495674_0074300 3300047319 Bacteria 2928
161 Ga0495680_0020496 3300047322 Bacteria 5562
162 Ga0495684_0108047 3300047471 Bacteria 2101
163 Ga0495602_0013336 3300048088 Bacteria 8405
164 Ga0496100_0083962 3300048903 Bacteria 2158
165 Ga0496101_0144915 3300048904 Bacteria 1813
166 Ga0496104_0307612 3300048907 Bacteria 1498
167 Ga0496111_0273516 3300048914 Bacteria 1253
168 Ga0496113_0417987 3300048916 Unclassified 1077
169 Ga0496115_0007866 3300048918 Bacteria 7862
170 Ga0496115_0053356 3300048918 Unclassified 3244
171 Ga0501076_0414005 3300049592 Bacteria 1109
172 nmdc:mga05p37_1873_c2 3300050507 Bacteria 15278
173 nmdc:mga05p37_2544_c1 3300050507 Bacteria 13785
174 nmdc:mga05p37_44749_c1 3300050507 Bacteria 5446
175 nmdc:mga05p37_78835_c1 3300050507 Bacteria 4056
176 nmdc:mga05p37_80396_c1 3300050507 Bacteria 4015
177 nmdc:mga09592_1726_c1 3300050508 Bacteria 17597
178 nmdc:mga0qj67_484052_c1 3300050509 Bacteria 995
179 nmdc:mga0n895_104896_c1 3300050512 Bacteria 2839
180 nmdc:mga0n895_51871_c1 3300050512 Bacteria 4025
181 nmdc:mga0rr50_137800_c1 3300050513 Bacteria 1960
182 nmdc:mga0rr50_141505_c1 3300050513 Bacteria 1936
183 nmdc:mga08x19_117239_c1 3300050514 Bacteria 1781
184 nmdc:mga08x19_15166_c1 3300050514 Bacteria 4685
185 nmdc:mga0a205_177342_c1 3300050515 Unclassified 2026
186 Ga0495619_0280555 3300053085 Bacteria 1154
187 Ga0501084_0285612
188 Ga0065712_10118565
189 Ga0070690_100105238
190 Ga0070690_100337613
191 Ga0070689_100085054
192 Ga0070669_100041107
193 Ga0070671_100038412
194 Ga0070673_100093075
195 Ga0070709_10001451
196 Ga0070710_10182514
197 Ga0070711_100044413
198 Ga0070705_100084624
199 Ga0070708_100022811
200 Ga0068867_100388785
201 Ga0070706_100340771
202 Ga0070706_100493102
203 Ga0070707_100004076
204 Ga0070707_100094929
205 Ga0070698_100043040
206 Ga0070698_100077691
207 Ga0070698_100079578
208 Ga0070699_100000017
209 Ga0070699_100045306
210 Ga0070699_100067493
211 Ga0070697_100001570
212 Ga0068853_100026374
213 Ga0070672_100031902
214 Ga0070665_100207520
215 Ga0070704_100001483
216 Ga0068857_100363625
217 Ga0068854_100000158
218 Ga0068859_100022395
219 Ga0068861_100050702
220 Ga0068863_100002787
221 Ga0068858_100122938
222 Ga0068860_100032637
223 Ga0068860_100184149
224 Ga0068862_100006939
225 Ga0068862_100466500
226 Ga0081455_10099554
227 Ga0081455_10152210
228 Ga0081455_10227518
229 Ga0070717_10003427
230 Ga0070716_100083790
231 Ga0070712_100021942
232 Ga0070712_100054102
233 Ga0070712_100120655
234 Ga0068871_100207884
235 Ga0075428_100009885
236 Ga0075428_100067842
237 Ga0075430_100376872
238 Ga0075431_100201006
239 Ga0075433_10028678
240 Ga0075433_10318284
241 Ga0075433_10450717
242 Ga0075434_100205071
243 Ga0075429_100005814
244 Ga0075429_100190127
245 Ga0075436_100001555
246 Ga0075436_100129246
247 Ga0097620_100022395
248 Ga0075435_100505568
249 Ga0099794_10046202
250 Ga0105240_10012010
251 Ga0111539_10018716
252 Ga0114129_10007656
253 Ga0114129_10011738
254 Ga0114129_10024695
255 Ga0114129_10033643
256 Ga0114129_10050725
257 Ga0114129_10065375
258 Ga0114129_10189414
259 Ga0105242_10057943
260 Ga0105248_10008753
261 Ga0105248_10015671
262 Ga0105248_10123944
263 Ga0105249_10135424
264 Ga0157378_10000605
265 Ga0157378_10096857
266 Ga0157378_10262874
267 Ga0163162_10215585
268 Ga0163163_10372098
269 Ga0157379_10104293
270 Ga0157379_10250721
271 Ga0157376_10000016
272 Ga0157376_10000468
273 Ga0228598_1001529
274 Ga0207692_10023982
275 Ga0207685_10023174
276 Ga0207707_10171647
277 Ga0207695_10012721
278 Ga0207693_10024478
279 Ga0207693_10027059
280 Ga0207693_10060967
281 Ga0207693_10130987
282 Ga0207693_10150668
283 Ga0207663_10216120
284 Ga0207657_10138596
285 Ga0207646_10004443
286 Ga0207681_10002244
287 Ga0207700_10151031
288 Ga0207664_10206019
289 Ga0207686_10195626
290 Ga0207665_10007375
291 Ga0207665_10070085
292 Ga0207691_10070209
293 Ga0207640_10000174
294 Ga0207658_10056858
295 Ga0207639_10000281
296 Ga0207641_10000705
297 Ga0207641_10007893
298 Ga0207674_10429669
299 Ga0209588_1010295
300 Ga0209588_1025051
301 Ga0207428_10013624
302 Ga0265354_1000482
303 Ga0265354_1000612
304 Ga0265357_1000226
305 Ga0268265_10003019
306 Ga0268265_10352471
307 Ga0268264_10307115
308 Ga0265338_10074491
309 Ga0265770_1004220
310 Ga0265765_1000148
311 Ga0307405_10096096
312 Ga0307406_10106770
313 Ga0307416_100447276
314 Ga0307415_100539439
315 Ga0307510_10041580
316 Ga0316212_1006626
317 Ga0373934_0005841
318 Ga0373934_0030326
319 Ga0373923_0103912
320 Ga0373954_0001134
321 Ga0373943_0083241
322 Ga0373943_0126221
323 Ga0373955_0012322
324 Ga0373937_0036546
325 Ga0373925_0144215
326 Ga0436364_0300703
327 Ga0436365_1163831
328 Ga0495641_0041799
329 Ga0495580_0000989
330 Ga0495580_0085339
331 Ga0495582_0000279
332 Ga0495582_0044345
333 Ga0495662_0042177
334 Ga0495630_0072810
335 Ga0495666_0098773
336 Ga0495665_0061306
337 Ga0495640_0044123
338 Ga0495587_0010274
339 Ga0495667_0025736
340 Ga0495623_0006087
341 Ga0495658_0022926
342 Ga0495658_0030103
343 Ga0495670_0217464
344 Ga0495600_0184133
345 Ga0495604_0000856
346 Ga0495674_0074300
347 Ga0495680_0020496
348 Ga0495684_0108047
349 Ga0495602_0013336
350 Ga0496100_0083962
351 Ga0496101_0144915
352 Ga0496104_0307612
353 Ga0496111_0273516
354 Ga0496113_0417987
355 Ga0496115_0007866
356 Ga0496115_0053356
357 Ga0501076_0414005
358 nmdc:mga05p37_1873_c2
359 nmdc:mga05p37_2544_c1
360 nmdc:mga05p37_44749_c1
361 nmdc:mga05p37_78835_c1
362 nmdc:mga05p37_80396_c1
363 nmdc:mga09592_1726_c1
364 nmdc:mga0qj67_484052_c1
365 nmdc:mga0n895_104896_c1
366 nmdc:mga0n895_51871_c1
367 nmdc:mga0rr50_137800_c1
368 nmdc:mga0rr50_141505_c1
369 nmdc:mga08x19_117239_c1
370 nmdc:mga08x19_15166_c1
371 nmdc:mga0a205_177342_c1
372 Ga0495619_0280555

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01014

Uricase

Uricase

188

317

0.97

PF01014

Uricase

Uricase

55

180

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7f2v-assembly1.cif.gz_A urate oxidase from thermobispora bispora in apo form 0.9743 1 276
6oe8-assembly1.cif.gz_D the crystal structure of hyper-thermostable aguricase mutant k12c/e286c 0.9731 1 276
1vax-assembly1.cif.gz_A crystal structure of uricase from arthrobacter globiformis 0.968 1 276
7f2v-assembly1.cif.gz_A urate oxidase from thermobispora bispora in apo form 0.9674 1 276
4cw0-assembly1.cif.gz_A crystal structure of cofactor-free urate oxidase anaerobically complexed with 9-methyl uric acid 0.9643 1 277
ID Description Score Start End Superfamily
1vaxB00 Alpha Beta;Roll;Urate Oxidase;Urate Oxidase; 0.9687 1 276 3.10.270.10
af_Q54LT2_1_287_3.10.270.10 Alpha Beta;Roll;Urate Oxidase;Urate Oxidase; 0.9643 1 277 3.10.270.10
af_Q54LT2_1_287_3.10.270.10 Alpha Beta;Roll;Urate Oxidase;Urate Oxidase; 0.9609 1 277 3.10.270.10
af_O74409_4_296_3.10.270.10 Alpha Beta;Roll;Urate Oxidase;Urate Oxidase; 0.9571 1 277 3.10.270.10
af_O74409_4_296_3.10.270.10 Alpha Beta;Roll;Urate Oxidase;Urate Oxidase; 0.9538 1 277 3.10.270.10
ID Description Score Start End GO Terms
AF-A0A539DU65-F1-model_v4 factor independent urate hydroxylase (EC 1.7.3.3) (Urate oxidase) 0.9925 116 277 GO:0004846
GO:0006144
GO:0019628
AF-A0A838QW59-F1-model_v4 factor independent urate hydroxylase (EC 1.7.3.3) (Urate oxidase) 0.9887 192 277 GO:0004846
GO:0005777
GO:0006145
GO:0019628
AF-A0A1Q7JKB5-F1-model_v4 Uricase (EC 1.7.3.3) 0.9864 93 277 GO:0004846
GO:0006144
GO:0019628
AF-A0A539DU65-F1-model_v4 factor independent urate hydroxylase (EC 1.7.3.3) (Urate oxidase) 0.9864 116 277 GO:0004846
GO:0006144
GO:0019628
AF-A0A519Z177-F1-model_v4 factor independent urate hydroxylase (EC 1.7.3.3) (Urate oxidase) 0.9854 137 277 GO:0004846
GO:0006144
GO:0019628

Map