F286262

General Info

Members Datasets Scaffolds Average Seq Length
186 138 372 450

Family's Representative Sequence

Representative Sequence 3300031911|Ga0307412_10078111|Ga0307412_100781112
Length 470
Sequence MSDQPLFRKILIANRGEIALRILRACHDLGLRAVVAYSDADRESLPVRLADEAVCIGPALAARSYNNIPAIVSAALITGCDAIHPGYGFLAENPYLAEVCGQVGVTFIGPRPEVIELMGNKAEARKMMKQAGVPIVPGSDGPLENLGEARQIAHRIGYPLLVKAVAGGGGRGMRVVRDEADLVRALPLAQAEAEAAFGNGEVYLERFIDRPRHVEVQVLADDSGNVLAVGERDCSIQRRHQKLIEEAPAPNLPRKTRDALLSAAVKGAKAARYTNAGTLEFLVDAAGNYYFMEMNTRIQVEHPVTEMTTGLDLVAWQIRIAAGTRLTLTERDREPSGHAIECRITAEDAANDFAPSVGTVETYVAPGGPGVRVDSHLYAGYSVPPFYDSLLGKIIVWGRDRDEAAARMERALTETVITGVPQTVSFLRSIVADDQFRAATYDTGFVSRVVARQLVATSPSADDGDAFAEG

Samples

Sample ID Description Type Environment
1 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
34 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
35 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
36 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
37 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
38 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
39 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
40 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
41 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
42 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
43 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
44 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
47 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
48 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
49 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
50 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
51 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
52 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
53 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
54 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
55 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
56 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
57 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
58 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
59 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
60 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
61 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
62 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
63 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
64 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
65 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
66 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
67 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
68 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
69 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
70 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
71 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
72 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
73 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
74 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
75 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
76 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
77 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
78 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
79 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
80 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
81 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
82 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
92 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
93 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
97 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
98 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
99 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
100 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
103 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
104 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
105 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
106 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
107 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
108 2511231010 Pseudomonas sp. GM25 Isolate Nodule
109 2511231023 Pseudomonas sp. GM80 Isolate Nodule
110 2511231024 Pseudomonas sp. GM84 Isolate Nodule
111 2599185307 Pseudomonas sp. NFACC02 Isolate Rhizoplane
112 2600254954 Pseudomonas sp. NFACC19-2 Isolate Rhizoplane
113 2713897148 Pseudomonas fluorescens SF39a Isolate Rhizosphere
114 2808606379 Pseudomonas sp. SJZ079 Isolate Rhizosphere
115 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
116 2842832357 Pseudomonas sp. R-72164 Isolate Unclassified
117 2842843487 Pseudomonas sp. R-72074 Isolate Unclassified
118 2880230671 Pseudomonas fluorescens LBUM677 Isolate Unclassified
119 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
120 2912963787 Pseudomonas sp. R32 Isolate Rhizosphere
121 2913036834 Pseudomonas viciae 11K1 Isolate Rhizosphere
122 2919385768 Pseudomonas sp. 2957 Isolate Unclassified
123 2919487758 Pseudomonas koreensis 3441 Isolate Unclassified
124 2919501602 Pseudomonas alcaliphila 3512 Isolate Unclassified
125 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
126 2926063275 Pseudomonas sp. 3400 Isolate Unclassified
127 2939651529 Pseudomonas sp. 2835 Isolate Rhizosphere
128 2974289157 Pseudomonas fluorescens SORGH_AS 191 Isolate Unclassified
129 2998139840 Pseudomonas iranensis SWRI54 Isolate Rhizosphere
130 3005710791 Bradyrhizobium genosp. B BDV5040 Isolate Unclassified
131 3007252601 Pseudomonas punonensis D1-6 Isolate Unclassified
132 3007614139 Pseudomonas sp. PB106 Isolate Unclassified
133 3007855910 Pseudomonas khorasanensis SWRI153 Isolate Rhizosphere
134 3007861166 Pseudomonas hamedanensis SWRI65 Isolate Rhizosphere
135 8011350971 Pseudomonas sp. 30_B Isolate Rhizosphere
136 8029995093 Pseudomonas atacamensis SM1 Isolate Rhizosphere
137 8056166840 Pseudomonas triticicola SWRI88 Isolate Rhizosphere
138 8056569372 Pseudomonas serboccidentalis IT-P374 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.33
Metatranscriptomes 0
Isolates 16.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.15
Nodule 2.15
Rhizoplane 1.61
Rhizosphere 84.95
Stem 0
Stem Tuber 0
Unclassified 1.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307412_10078111 3300031911 Bacteria 2279
2 SwRhRL2b_contig_1378541 2162886007 Bacteria 2416
3 Ga0065714_10002375 3300005288 Bacteria 22373
4 Ga0065714_10064479 3300005288 Bacteria 55183
5 Ga0065714_10065009 3300005288 Bacteria 14037
6 Ga0070683_100112073 3300005329 Bacteria 2574
7 Ga0070680_100234933 3300005336 Bacteria 1549
8 Ga0070675_100075803 3300005354 Bacteria 2796
9 Ga0070708_100023866 3300005445 Bacteria 5206
10 Ga0070708_100059387 3300005445 Bacteria 3409
11 Ga0070708_100074587 3300005445 Bacteria 3060
12 Ga0070681_10012786 3300005458 Bacteria 8331
13 Ga0070685_10003813 3300005466 Bacteria 7626
14 Ga0070706_100006585 3300005467 Bacteria 10954
15 Ga0070706_100007235 3300005467 Bacteria 10427
16 Ga0070706_100101756 3300005467 Bacteria 2670
17 Ga0070707_100007920 3300005468 Bacteria 9864
18 Ga0070707_100115919 3300005468 Bacteria 2600
19 Ga0070698_100034901 3300005471 Bacteria 5203
20 Ga0070698_100061890 3300005471 Bacteria 3777
21 Ga0070698_100119170 3300005471 Bacteria 2600
22 Ga0070699_100029021 3300005518 Bacteria 4769
23 Ga0070679_100010882 3300005530 Bacteria 8642
24 Ga0070697_100010601 3300005536 Bacteria 7194
25 Ga0070697_100013236 3300005536 Bacteria 6469
26 Ga0070697_100015687 3300005536 Bacteria 5949
27 Ga0068864_100004764 3300005618 Bacteria 11117
28 Ga0068863_100017340 3300005841 Bacteria 6905
29 Ga0081538_10012379 3300005981 Bacteria 6838
30 Ga0081539_10000292 3300005985 Bacteria 113454
31 Ga0081539_10012801 3300005985 Bacteria 6406
32 Ga0070717_10033215 3300006028 Bacteria 4162
33 Ga0070717_10050784 3300006028 Bacteria 3410
34 Ga0075365_10035455 3300006038 Bacteria 3227
35 Ga0075433_10011724 3300006852 Bacteria 7059
36 Ga0075433_10039644 3300006852 Bacteria 4074
37 Ga0114129_10000811 3300009147 Bacteria 40214
38 Ga0114129_10330298 3300009147 Bacteria 2025
39 Ga0105238_10000130 3300009551 Bacteria 82894
40 Ga0157370_10027327 3300013104 Bacteria 5627
41 Ga0157372_10070192 3300013307 Bacteria 3941
42 Ga0163163_10001601 3300014325 Bacteria 19022
43 Ga0207684_10002314 3300025910 Bacteria 19349
44 Ga0207684_10010610 3300025910 Bacteria 8098
45 Ga0207684_10026142 3300025910 Bacteria 4975
46 Ga0207707_10002432 3300025912 Bacteria 16755
47 Ga0207660_10188484 3300025917 Bacteria 1605
48 Ga0207646_10006997 3300025922 Bacteria 11554
49 Ga0207646_10022270 3300025922 Bacteria 5840
50 Ga0207694_10000007 3300025924 Bacteria 595422
51 Ga0207428_10010126 3300027907 Bacteria 8431
52 Ga0265338_10058484 3300028800 Bacteria 3402
53 Ga0265328_10006075 3300031239 Bacteria 5139
54 Ga0265331_10064357 3300031250 Bacteria 1726
55 Ga0265327_10000044 3300031251 Bacteria 284808
56 Ga0316579_10001612 3300031691 Bacteria 8258
57 Ga0316579_10023325 3300031691 Bacteria 2776
58 Ga0316579_10024274 3300031691 Bacteria 2728
59 Ga0265314_10010369 3300031711 Bacteria 7778
60 Ga0265342_10026326 3300031712 Bacteria 3646
61 Ga0316576_10007623 3300031727 Bacteria 6828
62 Ga0316578_10016353 3300031728 Bacteria 4012
63 Ga0316578_10018017 3300031728 Bacteria 3858
64 Ga0316578_10044472 3300031728 Bacteria 2583
65 Ga0307405_10103077 3300031731 Bacteria 1918
66 Ga0307407_10042068 3300031903 Bacteria 2559
67 Ga0307409_100009919 3300031995 Bacteria 5882
68 Ga0307409_100021001 3300031995 Bacteria 4466
69 Ga0307409_100090899 3300031995 Bacteria 2500
70 Ga0307416_100012332 3300032002 Bacteria 5754
71 Ga0307416_100028821 3300032002 Bacteria 4136
72 Ga0307416_100041036 3300032002 Bacteria 3601
73 Ga0307411_10172007 3300032005 Bacteria 1634
74 Ga0316583_10002478 3300032133 Bacteria 6416
75 Ga0316583_10036118 3300032133 Bacteria 1753
76 Ga0316580_10019131 3300032139 Bacteria 2108
77 Ga0373959_0000047 3300034820 Bacteria 27481
78 Ga0316582_0002188 3300036647 Bacteria 9076
79 Ga0316582_0095701 3300036647 Bacteria 1960
80 Ga0316582_0104496 3300036647 Bacteria 1879
81 Ga0316584_0030690 3300036712 Bacteria 3970
82 Ga0316584_0068226 3300036712 Bacteria 2665
83 Ga0316584_0135410 3300036712 Bacteria 1839
84 Ga0316581_0004784 3300037588 Bacteria 3484
85 Ga0316581_0039483 3300037588 Bacteria 1436
86 Ga0400483_079712 3300039062 Bacteria 57268
87 Ga0400483_140318 3300039062 Bacteria 97528
88 Ga0400483_175050 3300039062 Bacteria 48367
89 Ga0400483_179017 3300039062 Bacteria 26665
90 Ga0400483_222800 3300039062 Bacteria 244239
91 Ga0439438_000867 3300041405 Bacteria 13515
92 Ga0439445_0003300 3300042004 Bacteria 3624
93 Ga0450911_000069 3300042115 Bacteria 42544
94 Ga0451577_0019601 3300042876 Bacteria 6217
95 Ga0466969_0044384 3300044656 Unclassified 2211
96 Ga0466972_0003103 3300044658 Bacteria 8242
97 Ga0466965_0007165 3300044683 Bacteria 5107
98 Ga0466966_0010011 3300044684 Bacteria 6282
99 Ga0453684_0000614 3300044712 Bacteria 130471
100 Ga0466968_0006642 3300044735 Bacteria 4368
101 Ga0466970_0047543 3300044765 Unclassified 2287
102 Ga0466957_0060609 3300044842 Unclassified 2320
103 Ga0451576_0133946 3300045051 Bacteria 2583
104 Ga0466958_0002158 3300045836 Bacteria 9799
105 Ga0495617_001437 3300046452 Bacteria 10458
106 Ga0495605_0010348 3300046474 Bacteria 5221
107 Ga0495607_0016249 3300046501 Bacteria 4806
108 Ga0495583_0000610 3300046506 Bacteria 48428
109 Ga0495648_0007094 3300046524 Bacteria 9020
110 Ga0495642_0043137 3300046528 Bacteria 1839
111 Ga0495654_0002827 3300046530 Bacteria 10910
112 Ga0495625_0008467 3300046660 Bacteria 8777
113 Ga0495659_0001156 3300046664 Bacteria 9164
114 Ga0495670_0000687 3300046691 Bacteria 16105
115 Ga0495636_0042438 3300047318 Bacteria 1890
116 Ga0495672_0000357 3300047320 Bacteria 58589
117 Ga0495687_000159 3300047443 Bacteria 101178
118 Ga0495687_000160 3300047443 Bacteria 100989
119 Ga0495673_0002535 3300047469 Bacteria 12750
120 Ga0496108_0000023 3300048911 Bacteria 186204
121 Ga0495682_0000057 3300049460 Bacteria 102695
122 Ga0501034_0157295 3300049571 Bacteria 2246
123 Ga0501036_0135473 3300049572 Bacteria 2079
124 Ga0501037_0004669 3300049573 Bacteria 9953
125 Ga0501040_0085068 3300049576 Bacteria 2195
126 Ga0501042_0135767 3300049578 Bacteria 1774
127 Ga0501047_0018785 3300049581 Bacteria 6630
128 Ga0501047_0041664 3300049581 Bacteria 4437
129 Ga0501070_0054960 3300049586 Bacteria 3301
130 Ga0501070_0068469 3300049586 Bacteria 2938
131 Ga0501071_0018375 3300049587 Bacteria 4839
132 Ga0501071_0083404 3300049587 Bacteria 2341
133 Ga0501072_0046526 3300049588 Bacteria 3415
134 Ga0501072_0061385 3300049588 Bacteria 2965
135 Ga0501072_0063856 3300049588 Bacteria 2904
136 Ga0501073_0100229 3300049589 Bacteria 2011
137 Ga0501074_0000084 3300049590 Bacteria 45955
138 Ga0501076_0010082 3300049592 Bacteria 6994
139 Ga0501080_0010084 3300049742 Bacteria 8637
140 Ga0501080_0015932 3300049742 Bacteria 6934
141 Ga0501081_0006668 3300049743 Bacteria 7507
142 nmdc:mga0yw44_146527_c1 3300050492 Bacteria 1537
143 nmdc:mga05p37_218_c1 3300050507 Bacteria 57675
144 nmdc:mga05p37_501507_c1 3300050507 Bacteria 1393
145 nmdc:mga08y16_10246_c1 3300050511 Bacteria 9836
146 nmdc:mga0a205_15203_c1 3300050515 Bacteria 7190
147 nmdc:mga0a205_304251_c1 3300050515 Bacteria 1467
148 Ga0500641_0001338 3300053096 Bacteria 8760
149 Ga0500650_0000786 3300053098 Bacteria 8688
150 Ga0501084_0095490 3300054114 Bacteria 2497
151 Ga0501082_0012541 3300060353 Bacteria 7282
152 Ga0501082_0086631 3300060353 Bacteria 2702
153 Ga0530510_0030576 3300061734 Bacteria 3868
154 Ga0530510_0037418 3300061734 Bacteria 3499
155 Ga0530510_0049951 3300061734 Bacteria 3021
156 2511287809 2511231010 Bacteria 6373152
157 2511367124 2511231023 Bacteria 6808468
158 2511374627 2511231024 Bacteria 5835885
159 2599972536 2599185307 Bacteria 6194719
160 2600443716 2600254954 Bacteria 5100516
161 2715749402 2713897148 Bacteria 5883533
162 2808939555 2808606379 Bacteria 5022697
163 2812369036 2811994881 Bacteria 6298475
164 2842834355 2842832357 Bacteria 5959113
165 2842846167 2842843487 Bacteria 6004777
166 2880231310 2880230671 Bacteria 6140320
167 2894025447 2894023352 Bacteria 5167372
168 2912964365 2912963787 Bacteria 5646108
169 2913037476 2913036834 Bacteria 6704877
170 2919389578 2919385768 Bacteria 5897293
171 2919488506 2919487758 Bacteria 5929766
172 2919502051 2919501602 Bacteria 5286340
173 2923523115 2923519811 Bacteria 6298479
174 2926063724 2926063275 Bacteria 5285848
175 2939656485 2939651529 Bacteria 5895393
176 2974293152 2974289157 Bacteria 6080362
177 2998140660 2998139840 Bacteria 6073514
178 3005716987 3005710791 Bacteria 7622528
179 3007255452 3007252601 Bacteria 4559114
180 3007618287 3007614139 Bacteria 6053559
181 3007859891 3007855910 Bacteria 5637581
182 3007864130 3007861166 Bacteria 6045338
183 8011352828 8011350971 Bacteria 6158957
184 8030000079 8029995093 Bacteria 5990776
185 8056170386 8056166840 Bacteria 5820959
186 8056573490 8056569372 Bacteria 5997322
187 Ga0307412_10078111
188 SwRhRL2b_contig_1378541
189 Ga0065714_10002375
190 Ga0065714_10064479
191 Ga0065714_10065009
192 Ga0070683_100112073
193 Ga0070680_100234933
194 Ga0070675_100075803
195 Ga0070708_100023866
196 Ga0070708_100059387
197 Ga0070708_100074587
198 Ga0070681_10012786
199 Ga0070685_10003813
200 Ga0070706_100006585
201 Ga0070706_100007235
202 Ga0070706_100101756
203 Ga0070707_100007920
204 Ga0070707_100115919
205 Ga0070698_100034901
206 Ga0070698_100061890
207 Ga0070698_100119170
208 Ga0070699_100029021
209 Ga0070679_100010882
210 Ga0070697_100010601
211 Ga0070697_100013236
212 Ga0070697_100015687
213 Ga0068864_100004764
214 Ga0068863_100017340
215 Ga0081538_10012379
216 Ga0081539_10000292
217 Ga0081539_10012801
218 Ga0070717_10033215
219 Ga0070717_10050784
220 Ga0075365_10035455
221 Ga0075433_10011724
222 Ga0075433_10039644
223 Ga0114129_10000811
224 Ga0114129_10330298
225 Ga0105238_10000130
226 Ga0157370_10027327
227 Ga0157372_10070192
228 Ga0163163_10001601
229 Ga0207684_10002314
230 Ga0207684_10010610
231 Ga0207684_10026142
232 Ga0207707_10002432
233 Ga0207660_10188484
234 Ga0207646_10006997
235 Ga0207646_10022270
236 Ga0207694_10000007
237 Ga0207428_10010126
238 Ga0265338_10058484
239 Ga0265328_10006075
240 Ga0265331_10064357
241 Ga0265327_10000044
242 Ga0316579_10001612
243 Ga0316579_10023325
244 Ga0316579_10024274
245 Ga0265314_10010369
246 Ga0265342_10026326
247 Ga0316576_10007623
248 Ga0316578_10016353
249 Ga0316578_10018017
250 Ga0316578_10044472
251 Ga0307405_10103077
252 Ga0307407_10042068
253 Ga0307409_100009919
254 Ga0307409_100021001
255 Ga0307409_100090899
256 Ga0307416_100012332
257 Ga0307416_100028821
258 Ga0307416_100041036
259 Ga0307411_10172007
260 Ga0316583_10002478
261 Ga0316583_10036118
262 Ga0316580_10019131
263 Ga0373959_0000047
264 Ga0316582_0002188
265 Ga0316582_0095701
266 Ga0316582_0104496
267 Ga0316584_0030690
268 Ga0316584_0068226
269 Ga0316584_0135410
270 Ga0316581_0004784
271 Ga0316581_0039483
272 Ga0400483_079712
273 Ga0400483_140318
274 Ga0400483_175050
275 Ga0400483_179017
276 Ga0400483_222800
277 Ga0439438_000867
278 Ga0439445_0003300
279 Ga0450911_000069
280 Ga0451577_0019601
281 Ga0466969_0044384
282 Ga0466972_0003103
283 Ga0466965_0007165
284 Ga0466966_0010011
285 Ga0453684_0000614
286 Ga0466968_0006642
287 Ga0466970_0047543
288 Ga0466957_0060609
289 Ga0451576_0133946
290 Ga0466958_0002158
291 Ga0495617_001437
292 Ga0495605_0010348
293 Ga0495607_0016249
294 Ga0495583_0000610
295 Ga0495648_0007094
296 Ga0495642_0043137
297 Ga0495654_0002827
298 Ga0495625_0008467
299 Ga0495659_0001156
300 Ga0495670_0000687
301 Ga0495636_0042438
302 Ga0495672_0000357
303 Ga0495687_000159
304 Ga0495687_000160
305 Ga0495673_0002535
306 Ga0496108_0000023
307 Ga0495682_0000057
308 Ga0501034_0157295
309 Ga0501036_0135473
310 Ga0501037_0004669
311 Ga0501040_0085068
312 Ga0501042_0135767
313 Ga0501047_0018785
314 Ga0501047_0041664
315 Ga0501070_0054960
316 Ga0501070_0068469
317 Ga0501071_0018375
318 Ga0501071_0083404
319 Ga0501072_0046526
320 Ga0501072_0061385
321 Ga0501072_0063856
322 Ga0501073_0100229
323 Ga0501074_0000084
324 Ga0501076_0010082
325 Ga0501080_0010084
326 Ga0501080_0015932
327 Ga0501081_0006668
328 nmdc:mga0yw44_146527_c1
329 nmdc:mga05p37_218_c1
330 nmdc:mga05p37_501507_c1
331 nmdc:mga08y16_10246_c1
332 nmdc:mga0a205_15203_c1
333 nmdc:mga0a205_304251_c1
334 Ga0500641_0001338
335 Ga0500650_0000786
336 Ga0501084_0095490
337 Ga0501082_0012541
338 Ga0501082_0086631
339 Ga0530510_0030576
340 Ga0530510_0037418
341 Ga0530510_0049951
342 2511287809
343 2511367124
344 2511374627
345 2599972536
346 2600443716
347 2715749402
348 2808939555
349 2812369036
350 2842834355
351 2842846167
352 2880231310
353 2894025447
354 2912964365
355 2913037476
356 2919389578
357 2919488506
358 2919502051
359 2923523115
360 2926063724
361 2939656485
362 2974293152
363 2998140660
364 3005716987
365 3007255452
366 3007618287
367 3007859891
368 3007864130
369 8011352828
370 8030000079
371 8056170386
372 8056573490

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00289

Biotin_carb_N

Biotin carboxylase, N-terminal domain

6

115

0.99

PF02785

Biotin_carb_C

Biotin carboxylase C-terminal domain

341

448

0.99

PF02786

CPSase_L_D2

Carbamoyl-phosphate synthase L chain, ATP binding domain

120

329

0.99

PF07478

Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

127

298

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.9953 1 438
3jzf-assembly1.cif.gz_A crystal structure of biotin carboxylase from e. coli in complex with benzimidazoles series 0.995 1 442
2w6p-assembly2.cif.gz_B crystal structure of biotin carboxylase from e. coli in complex with 5-methyl-6-phenyl-quinazoline-2,4-diamine 0.9925 1 440
4mv6-assembly1.cif.gz_A crystal structure of biotin carboxylase from haemophilus influenzae in complex with phosphonoacetamide 0.992 1 438
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.99 1 438
ID Description Score Start End Superfamily
2w6pB02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9964 196 440 3.30.470.20
2vqdA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9963 1 84 3.40.50.20
af_A0A2R8PV58_38_157_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9881 14 131 3.40.50.20
af_A0A2R8PV58_229_474_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9843 199 438 3.30.470.20
2w6pB02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9804 196 440 3.30.470.20
ID Description Score Start End GO Terms
AF-A0A7C5TV65-F1-model_v4 Biotin carboxylation domain-containing protein 0.9974 3 75 GO:0005524
GO:0016874
AF-A0A2V8M7X3-F1-model_v4 Acetyl-CoA carboxylase biotin carboxylase subunit (EC 6.4.1.2) 0.9968 1 110 GO:0003989
GO:0005524
AF-A0A382MGM7-F1-model_v4 Biotin carboxylation domain-containing protein 0.9963 1 75 GO:0004658
GO:0005524
GO:0005739
AF-A0A519SWJ0-F1-model_v4 Acetyl-CoA carboxylase biotin carboxylase subunit (EC 6.4.1.2) 0.9962 1 72 GO:0003989
GO:0004658
GO:0005524
AF-A0A2M8PKW1-F1-model_v4 3-methylcrotonyl-CoA carboxylase 0.9958 1 104 GO:0005524
GO:0016874

Map