F284556

General Info

Members Datasets Scaffolds Average Seq Length
185 136 370 331

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10008041|Ga0265327_100080413
Length 355
Sequence MSGFLVLEDGEVFPGESVGARGVALGEAVFTTGMTGYQEVVTDPSFSGQIVCFTAPMVGNYGVAEHRAESVAPHARGVVMREARGPEWTDWLTQHDVPALSGVDTRSLTLHLREHGALRAALAVDGRGVDETLELVRNQPSMSGQALAGRVSTEAPYVFSEGDVCVAVVDYGTKRSILRQLAAAGAAVTVFPHDVDAETLVAFDGVVLSNGPGDPEPLVAETATVGDLLGRVPVLGICLGHQLLALATGLRTYKLPFGHRGANHPVLDRRTGRVLVTSQNHGFAVAPGDGRATSHESLYDGTTEGLAYPKLRARSVQFHPEAGPGPHDARPLFAEWAEEVRRSPGDRMRCNSAAA

Samples

Sample ID Description Type Environment
1 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
27 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
46 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
47 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
48 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
76 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
79 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
80 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
81 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
82 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
83 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
84 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
87 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
88 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
89 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
90 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
91 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
92 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
93 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
94 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
95 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
96 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
97 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
98 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
99 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
100 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
105 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
106 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
107 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
108 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
109 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
110 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
111 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
112 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
113 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
114 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
119 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
120 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
121 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
122 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
123 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
128 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
129 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
130 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
131 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
132 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
136 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.46
Metatranscriptomes 0.54
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 7.57
Rhizosphere 91.35
Stem 0
Stem Tuber 0
Unclassified 0.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265327_10008041 3300031251 Bacteria 7955
2 Ga0070670_100005161 3300005331 Bacteria 10991
3 Ga0070670_100010335 3300005331 Bacteria 7966
4 Ga0070670_100027726 3300005331 Bacteria 4872
5 Ga0068869_100063812 3300005334 Bacteria 2708
6 Ga0070680_100137030 3300005336 Bacteria 2051
7 Ga0070682_100059515 3300005337 Bacteria 2413
8 Ga0070660_100030116 3300005339 Bacteria 4069
9 Ga0070660_100124381 3300005339 Bacteria 2060
10 Ga0070689_100015369 3300005340 Bacteria 5581
11 Ga0070675_100097919 3300005354 Bacteria 2466
12 Ga0070674_100011050 3300005356 Bacteria 5479
13 Ga0070673_100007754 3300005364 Bacteria 7102
14 Ga0070714_100037567 3300005435 Bacteria 4070
15 Ga0070714_100096649 3300005435 Bacteria 2595
16 Ga0070663_100263417 3300005455 Bacteria 1368
17 Ga0070681_10008490 3300005458 Bacteria 10055
18 Ga0068867_100201095 3300005459 Bacteria 1595
19 Ga0070685_10005472 3300005466 Bacteria 6433
20 Ga0070706_100110775 3300005467 Bacteria 2555
21 Ga0070699_100193210 3300005518 Bacteria 1809
22 Ga0070679_100014066 3300005530 Bacteria 7675
23 Ga0070679_100087063 3300005530 Bacteria 3111
24 Ga0070704_100338517 3300005549 Bacteria 1266
25 Ga0068855_100089258 3300005563 Bacteria 3559
26 Ga0068855_100100753 3300005563 Bacteria 3325
27 Ga0068855_100133988 3300005563 Bacteria 2827
28 Ga0070664_100309618 3300005564 Bacteria 1429
29 Ga0068857_100073437 3300005577 Bacteria 3048
30 Ga0068857_100081987 3300005577 Bacteria 2881
31 Ga0070702_100108923 3300005615 Bacteria 1714
32 Ga0068852_100288800 3300005616 Bacteria 1584
33 Ga0068861_100079756 3300005719 Bacteria 2560
34 Ga0081455_10005720 3300005937 Bacteria 13556
35 Ga0081455_10013085 3300005937 Bacteria 8225
36 Ga0081455_10165672 3300005937 Bacteria 1689
37 Ga0081538_10001522 3300005981 Bacteria 23789
38 Ga0068865_100026387 3300006881 Bacteria 3830
39 Ga0068865_100039334 3300006881 Bacteria 3207
40 Ga0075435_100017581 3300007076 Bacteria 5416
41 Ga0105240_10345955 3300009093 Bacteria 1688
42 Ga0105245_10409375 3300009098 Bacteria 1357
43 Ga0114129_10067590 3300009147 Bacteria 4984
44 Ga0114129_10258122 3300009147 Bacteria 2337
45 Ga0105243_10021402 3300009148 Bacteria 4908
46 Ga0105243_10046708 3300009148 Bacteria 3407
47 Ga0105242_10228260 3300009176 Bacteria 1667
48 Ga0105242_10402900 3300009176 Bacteria 1277
49 Ga0105239_10113598 3300010375 Bacteria 3003
50 Ga0105246_10001127 3300011119 Bacteria 15513
51 Ga0105246_10052185 3300011119 Bacteria 2810
52 Ga0157373_10118562 3300013100 Bacteria 1860
53 Ga0157370_10081078 3300013104 Bacteria 3054
54 Ga0157369_10002655 3300013105 Bacteria 21343
55 Ga0157369_10070113 3300013105 Bacteria 3766
56 Ga0157374_10231724 3300013296 Bacteria 1814
57 Ga0163162_10253470 3300013306 Bacteria 1892
58 Ga0157372_10583710 3300013307 Bacteria 1303
59 Ga0157375_10013456 3300013308 Bacteria 7282
60 Ga0163163_10011959 3300014325 Bacteria 7897
61 Ga0182008_10069971 3300014497 Bacteria 1726
62 Ga0157377_10011987 3300014745 Bacteria 4346
63 Ga0163161_10241291 3300017792 Bacteria 1405
64 Ga0206353_11844306 3300020082 Bacteria 1696
65 Ga0207692_10018283 3300025898 Bacteria 3143
66 Ga0207684_10166123 3300025910 Bacteria 1902
67 Ga0207707_10017502 3300025912 Bacteria 6248
68 Ga0207707_10039816 3300025912 Bacteria 4107
69 Ga0207707_10361773 3300025912 Bacteria 1249
70 Ga0207695_10420173 3300025913 Bacteria 1221
71 Ga0207660_10256878 3300025917 Bacteria 1380
72 Ga0207657_10024963 3300025919 Bacteria 5523
73 Ga0207657_10033983 3300025919 Bacteria 4592
74 Ga0207652_10051336 3300025921 Bacteria 3535
75 Ga0207646_10152500 3300025922 Bacteria 2084
76 Ga0207650_10017533 3300025925 Bacteria 5016
77 Ga0207659_10040193 3300025926 Bacteria 3269
78 Ga0207700_10000006 3300025928 Bacteria 348187
79 Ga0207664_10128539 3300025929 Bacteria 2130
80 Ga0207706_10027836 3300025933 Bacteria 5052
81 Ga0207686_10151487 3300025934 Bacteria 1615
82 Ga0207709_10106417 3300025935 Bacteria 1866
83 Ga0207669_10014838 3300025937 Bacteria 3916
84 Ga0207669_10059162 3300025937 Bacteria 2342
85 Ga0207704_10042979 3300025938 Bacteria 2664
86 Ga0207704_10059836 3300025938 Bacteria 2354
87 Ga0207665_10073029 3300025939 Bacteria 2345
88 Ga0207689_10027448 3300025942 Bacteria 4765
89 Ga0207667_10171260 3300025949 Bacteria 2231
90 Ga0207667_10265952 3300025949 Bacteria 1753
91 Ga0207639_10304986 3300026041 Bacteria 1409
92 Ga0207708_10006038 3300026075 Bacteria 8978
93 Ga0207708_10110309 3300026075 Bacteria 2135
94 Ga0207648_10102936 3300026089 Bacteria 2503
95 Ga0207648_10139557 3300026089 Bacteria 2136
96 Ga0207674_10014202 3300026116 Bacteria 8799
97 Ga0207674_10138452 3300026116 Bacteria 2395
98 Ga0207675_100004302 3300026118 Bacteria 13757
99 Ga0207683_10003740 3300026121 Bacteria 13203
100 Ga0265319_1006091 3300028563 Bacteria 5651
101 Ga0265319_1011853 3300028563 Bacteria 3548
102 Ga0265318_10028767 3300028577 Bacteria 2170
103 Ga0265338_10031051 3300028800 Bacteria 5246
104 Ga0265338_10046204 3300028800 Bacteria 3992
105 Ga0265338_10058986 3300028800 Bacteria 3383
106 Ga0307416_100262769 3300032002 Bacteria 1688
107 Ga0307416_100305997 3300032002 Bacteria 1583
108 Ga0307416_100394407 3300032002 Bacteria 1419
109 Ga0373936_0022917 3300035113 Bacteria 2431
110 Ga0373945_0014568 3300035116 Bacteria 2636
111 Ga0373943_0003751 3300035170 Bacteria 6906
112 Ga0373935_0035883 3300035692 Bacteria 3096
113 Ga0373947_0011030 3300035725 Bacteria 5185
114 Ga0395899_0088070 3300037312 Bacteria 2253
115 Ga0395900_0010486 3300037418 Bacteria 9478
116 Ga0395900_0067334 3300037418 Bacteria 3679
117 Ga0395900_0113410 3300037418 Bacteria 2782
118 Ga0395900_0404490 3300037418 Bacteria 1328
119 Ga0395898_0023048 3300037466 Bacteria 6295
120 Ga0395898_0149166 3300037466 Bacteria 2238
121 Ga0395905_0122602 3300037471 Bacteria 2444
122 Ga0395905_0198171 3300037471 Bacteria 1883
123 Ga0395905_0209128 3300037471 Bacteria 1828
124 Ga0395905_0463683 3300037471 Bacteria 1165
125 Ga0395901_0012514 3300038443 Bacteria 8608
126 Ga0395901_0025366 3300038443 Bacteria 6086
127 Ga0395901_0050915 3300038443 Bacteria 4303
128 Ga0436365_0495611 3300039437 Bacteria 2405
129 Ga0436365_0863948 3300039437 Bacteria 2254
130 Ga0436360_0228197 3300039438 Bacteria 3241
131 Ga0436362_0516509 3300039453 Bacteria 2768
132 Ga0439433_0001718 3300041999 Bacteria 4554
133 Ga0439432_052377 3300042006 Bacteria 1271
134 Ga0439446_0040296 3300042156 Bacteria 1374
135 Ga0466965_0045457 3300044683 Bacteria 2172
136 Ga0466966_0004796 3300044684 Bacteria 8894
137 Ga0466961_0074089 3300044693 Bacteria 2159
138 Ga0466964_0000855 3300044706 Bacteria 9969
139 Ga0466964_0019319 3300044706 Bacteria 2618
140 Ga0466968_0003589 3300044735 Bacteria 5741
141 Ga0466960_0000503 3300044901 Bacteria 13374
142 Ga0451576_0075154 3300045051 Bacteria 3516
143 Ga0466958_0071630 3300045836 Bacteria 2122
144 Ga0466958_0164355 3300045836 Bacteria 1404
145 Ga0466967_0000836 3300045976 Bacteria 16231
146 Ga0466967_0001847 3300045976 Bacteria 12742
147 Ga0466967_0050816 3300045976 Bacteria 3631
148 Ga0495580_0055964 3300046472 Bacteria 2778
149 Ga0495628_0104524 3300046516 Bacteria 2182
150 Ga0495630_0000039 3300046517 Bacteria 108982
151 Ga0495630_0182716 3300046517 Bacteria 1599
152 Ga0495666_0002925 3300046526 Bacteria 8556
153 Ga0495586_0000022 3300046535 Bacteria 108323
154 Ga0495634_0045433 3300046642 Unclassified 2969
155 Ga0495635_0018875 3300046663 Bacteria 4813
156 Ga0495599_0209574 3300046678 Bacteria 1195
157 Ga0495674_0002102 3300047319 Bacteria 19555
158 Ga0495674_0243281 3300047319 Bacteria 1482
159 Ga0495676_0054023 3300047321 Bacteria 3196
160 Ga0495677_0055778 3300047445 Bacteria 1459
161 Ga0496102_0016919 3300048905 Bacteria 6381
162 Ga0496103_0043147 3300048906 Bacteria 2776
163 Ga0496104_0001483 3300048907 Bacteria 20245
164 Ga0496104_0109206 3300048907 Bacteria 2651
165 Ga0496105_0009599 3300048908 Bacteria 7573
166 Ga0496106_0207588 3300048909 Bacteria 1560
167 Ga0496107_0241750 3300048910 Bacteria 1343
168 Ga0496108_0082321 3300048911 Bacteria 2729
169 Ga0496108_0244391 3300048911 Bacteria 1561
170 Ga0496110_0005383 3300048913 Bacteria 10030
171 Ga0496110_0074899 3300048913 Bacteria 3007
172 Ga0496111_0103118 3300048914 Bacteria 2098
173 Ga0496112_0007087 3300048915 Bacteria 9908
174 Ga0496114_0135929 3300048917 Bacteria 2126
175 Ga0501047_0474333 3300049581 Bacteria 1079
176 Ga0501068_0370344 3300049584 Bacteria 922
177 Ga0501072_0430663 3300049588 Bacteria 1045
178 Ga0501074_0178551 3300049590 Bacteria 1515
179 Ga0501077_0030187 3300049593 Bacteria 3449
180 Ga0501081_0184982 3300049743 Bacteria 1508
181 nmdc:mga05p37_97616_c1 3300050507 Bacteria 3619
182 nmdc:mga0n895_86138_c1 3300050512 Bacteria 3138
183 nmdc:mga0rr50_104311_c1 3300050513 Bacteria 2233
184 nmdc:mga0a205_25639_c1 3300050515 Bacteria 4774
185 Ga0495601_0105293 3300053077 Bacteria 1824
186 Ga0265327_10008041
187 Ga0070670_100005161
188 Ga0070670_100010335
189 Ga0070670_100027726
190 Ga0068869_100063812
191 Ga0070680_100137030
192 Ga0070682_100059515
193 Ga0070660_100030116
194 Ga0070660_100124381
195 Ga0070689_100015369
196 Ga0070675_100097919
197 Ga0070674_100011050
198 Ga0070673_100007754
199 Ga0070714_100037567
200 Ga0070714_100096649
201 Ga0070663_100263417
202 Ga0070681_10008490
203 Ga0068867_100201095
204 Ga0070685_10005472
205 Ga0070706_100110775
206 Ga0070699_100193210
207 Ga0070679_100014066
208 Ga0070679_100087063
209 Ga0070704_100338517
210 Ga0068855_100089258
211 Ga0068855_100100753
212 Ga0068855_100133988
213 Ga0070664_100309618
214 Ga0068857_100073437
215 Ga0068857_100081987
216 Ga0070702_100108923
217 Ga0068852_100288800
218 Ga0068861_100079756
219 Ga0081455_10005720
220 Ga0081455_10013085
221 Ga0081455_10165672
222 Ga0081538_10001522
223 Ga0068865_100026387
224 Ga0068865_100039334
225 Ga0075435_100017581
226 Ga0105240_10345955
227 Ga0105245_10409375
228 Ga0114129_10067590
229 Ga0114129_10258122
230 Ga0105243_10021402
231 Ga0105243_10046708
232 Ga0105242_10228260
233 Ga0105242_10402900
234 Ga0105239_10113598
235 Ga0105246_10001127
236 Ga0105246_10052185
237 Ga0157373_10118562
238 Ga0157370_10081078
239 Ga0157369_10002655
240 Ga0157369_10070113
241 Ga0157374_10231724
242 Ga0163162_10253470
243 Ga0157372_10583710
244 Ga0157375_10013456
245 Ga0163163_10011959
246 Ga0182008_10069971
247 Ga0157377_10011987
248 Ga0163161_10241291
249 Ga0206353_11844306
250 Ga0207692_10018283
251 Ga0207684_10166123
252 Ga0207707_10017502
253 Ga0207707_10039816
254 Ga0207707_10361773
255 Ga0207695_10420173
256 Ga0207660_10256878
257 Ga0207657_10024963
258 Ga0207657_10033983
259 Ga0207652_10051336
260 Ga0207646_10152500
261 Ga0207650_10017533
262 Ga0207659_10040193
263 Ga0207700_10000006
264 Ga0207664_10128539
265 Ga0207706_10027836
266 Ga0207686_10151487
267 Ga0207709_10106417
268 Ga0207669_10014838
269 Ga0207669_10059162
270 Ga0207704_10042979
271 Ga0207704_10059836
272 Ga0207665_10073029
273 Ga0207689_10027448
274 Ga0207667_10171260
275 Ga0207667_10265952
276 Ga0207639_10304986
277 Ga0207708_10006038
278 Ga0207708_10110309
279 Ga0207648_10102936
280 Ga0207648_10139557
281 Ga0207674_10014202
282 Ga0207674_10138452
283 Ga0207675_100004302
284 Ga0207683_10003740
285 Ga0265319_1006091
286 Ga0265319_1011853
287 Ga0265318_10028767
288 Ga0265338_10031051
289 Ga0265338_10046204
290 Ga0265338_10058986
291 Ga0307416_100262769
292 Ga0307416_100305997
293 Ga0307416_100394407
294 Ga0373936_0022917
295 Ga0373945_0014568
296 Ga0373943_0003751
297 Ga0373935_0035883
298 Ga0373947_0011030
299 Ga0395899_0088070
300 Ga0395900_0010486
301 Ga0395900_0067334
302 Ga0395900_0113410
303 Ga0395900_0404490
304 Ga0395898_0023048
305 Ga0395898_0149166
306 Ga0395905_0122602
307 Ga0395905_0198171
308 Ga0395905_0209128
309 Ga0395905_0463683
310 Ga0395901_0012514
311 Ga0395901_0025366
312 Ga0395901_0050915
313 Ga0436365_0495611
314 Ga0436365_0863948
315 Ga0436360_0228197
316 Ga0436362_0516509
317 Ga0439433_0001718
318 Ga0439432_052377
319 Ga0439446_0040296
320 Ga0466965_0045457
321 Ga0466966_0004796
322 Ga0466961_0074089
323 Ga0466964_0000855
324 Ga0466964_0019319
325 Ga0466968_0003589
326 Ga0466960_0000503
327 Ga0451576_0075154
328 Ga0466958_0071630
329 Ga0466958_0164355
330 Ga0466967_0000836
331 Ga0466967_0001847
332 Ga0466967_0050816
333 Ga0495580_0055964
334 Ga0495628_0104524
335 Ga0495630_0000039
336 Ga0495630_0182716
337 Ga0495666_0002925
338 Ga0495586_0000022
339 Ga0495634_0045433
340 Ga0495635_0018875
341 Ga0495599_0209574
342 Ga0495674_0002102
343 Ga0495674_0243281
344 Ga0495676_0054023
345 Ga0495677_0055778
346 Ga0496102_0016919
347 Ga0496103_0043147
348 Ga0496104_0001483
349 Ga0496104_0109206
350 Ga0496105_0009599
351 Ga0496106_0207588
352 Ga0496107_0241750
353 Ga0496108_0082321
354 Ga0496108_0244391
355 Ga0496110_0005383
356 Ga0496110_0074899
357 Ga0496111_0103118
358 Ga0496112_0007087
359 Ga0496114_0135929
360 Ga0501047_0474333
361 Ga0501068_0370344
362 Ga0501072_0430663
363 Ga0501074_0178551
364 Ga0501077_0030187
365 Ga0501081_0184982
366 nmdc:mga05p37_97616_c1
367 nmdc:mga0n895_86138_c1
368 nmdc:mga0rr50_104311_c1
369 nmdc:mga0a205_25639_c1
370 Ga0495601_0105293

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00117

GATase

Glutamine amidotransferase class-I

167

338

0.97

PF00988

CPSase_sm_chain

Carbamoyl-phosphate synthase small chain, CPSase domain

5

122

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c30-assembly1.cif.gz_B crystal structure of carbamoyl phosphate synthetase: small subunit mutation c269s 0.9377 6 373
1jdb-assembly1.cif.gz_F carbamoyl phosphate synthetase from escherichia coli 0.9341 6 372
1t36-assembly1.cif.gz_B crystal structure of e. coli carbamoyl phosphate synthetase small subunit mutant c248d complexed with uridine 5'-monophosphate 0.9336 6 372
1a9x-assembly1.cif.gz_B carbamoyl phosphate synthetase: caught in the act of glutamine hydrolysis 0.933 6 372
1cs0-assembly4.cif.gz_B crystal structure of carbamoyl phosphate synthetase complexed at cys269 in the small subunit with the tetrahedral mimic l-glutamate gamma-semialdehyde 0.9313 6 372
ID Description Score Start End Superfamily
af_P0A6F1_2_151_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9536 6 152 3.50.30.20
af_C6TIQ8_51_199_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9487 7 152 3.50.30.20
af_Q2FZ73_174_352_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9477 191 366 3.40.50.880
af_P9WPK5_1_155_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9443 6 154 3.50.30.20
af_Q2FZ73_3_150_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9382 6 152 3.50.30.20
ID Description Score Start End GO Terms
AF-A0A382H7S1-F1-model_v4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) 0.9677 189 373 GO:0005524
GO:0016874
AF-A0A2V8U0V3-F1-model_v4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) 0.9666 231 372 GO:0005524
GO:0016874
AF-A0A6I1QPM8-F1-model_v4 Carbamoyl phosphate synthase small chain (EC 6.3.5.5) (Carbamoyl phosphate synthetase glutamine chain) 0.9628 6 373 GO:0004088
GO:0005524
GO:0006207
GO:0006526
GO:0006541
GO:0044205
AF-A0A7C1BY76-F1-model_v4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) (Arginine-specific carbamoyl phosphate synthetase, glutamine chain) 0.9628 6 342 GO:0004088
GO:0005524
GO:0006207
GO:0006541
AF-A0A3M1PFL2-F1-model_v4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) 0.9615 194 372 GO:0005524
GO:0006541
GO:0016874

Map