F283591

General Info

Members Datasets Scaffolds Average Seq Length
185 107 178 459

Family's Representative Sequence

Representative Sequence 3300002737|JGI25162J39368_1002054|JGI25162J39368_10020548
Length 483
Sequence MQISIRSALKMLDTASQLPILYLYSTMSESIFPENFLESLAVEPGFDRQNFIEAHQNGAALTSIRINPFKKTIIKTDEQVPWCAEGFYLDTRPSFTFDPLFHAGAYYVQEASSMFMGHILNHIKENNDEQLAVLDLCAAPGGKSTLINSGIGNGDLLVSNEIIKTRVPILCDNLNRWGTANTIVSNNDPRDFGRLPGFFDIILVDAPCSGSGMFRKDAAAMNEWSAANVNLCHQRQERIMADVYPALKQDGYLIYSTCSYSHQENEDILDWLCAEFDLESIRIPIYKEWGIVETESYRFYPGKVKGEGLFAACLRKRDSSGQLPSFKAKGNQKLPMKEIDMVKGYLNAADDFYFFKVNDEWLAIDHQHKDSLDILQRNLYIKKSGVRIGKLMGSDLVPDHELALSIYINKEKVLQTELSYEQAIQYLRRENIDINSTQKGWSLMEFEGQALGWAKLLPNRVNNYFPKELRILASPPAPEGRNQ

Samples

Sample ID Description Type Environment
1 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
2 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
3 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
4 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
5 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
6 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
7 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
8 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
9 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
10 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
11 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
12 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
13 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
14 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
15 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
16 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
17 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
18 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
19 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
20 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
21 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
24 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
53 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
76 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
77 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
78 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
79 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
80 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
81 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
84 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
85 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
86 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
87 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
88 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
89 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
90 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
91 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
92 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
93 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
94 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
95 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
96 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
97 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
98 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
101 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
104 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
105 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
106 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
107 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.68
Metatranscriptomes 0
Isolates 4.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.27
Nodule 0
Rhizoplane 0.54
Rhizosphere 80.54
Stem 0
Stem Tuber 0
Unclassified 8.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1004271 3300001904 Bacteria 2449
2 JGI24737J22298_10000681 3300001990 Bacteria 11981
3 JGI24735J21928_10000005 3300002067 Bacteria 356755
4 JGI25162J39368_1000682 3300002737 Bacteria 23752
5 JGI25162J39368_1002054 3300002737 Bacteria 8776
6 JGI25164J39214_1000613 3300002772 Bacteria 15237
7 JGI25165J46597_1001008 3300003214 Bacteria 18669
8 rootH1_10080216 3300003316 Bacteria 3251
9 rootH1_10080216 3300003323 Unclassified 2003
10 rootH1_10100651 3300003316 Bacteria 5519
11 rootH2_10018482 3300003320 Bacteria 7697
12 rootH2_10047243 3300003320 Bacteria 9430
13 rootH2_10227711 3300003320 Bacteria 2468
14 rootH2_10233854 3300003320 Bacteria 2530
15 rootH1_10007213 3300003323 Bacteria 37505
16 rootH1_10330766 3300003323 Bacteria 2153
17 Ga0065714_10085087 3300005288 Bacteria 2152
18 Ga0070676_10007187 3300005328 Bacteria 5966
19 Ga0068868_100125764 3300005338 Bacteria 2094
20 Ga0070673_100008632 3300005364 Bacteria 6788
21 Ga0070678_100017640 3300005456 Bacteria 4604
22 Ga0070662_100002313 3300005457 Bacteria 11700
23 Ga0068867_100008159 3300005459 Bacteria 7397
24 Ga0070679_100027955 3300005530 Bacteria 5557
25 Ga0068853_100018436 3300005539 Bacteria 5776
26 Ga0070665_100000061 3300005548 Bacteria 222138
27 Ga0068855_100000831 3300005563 Bacteria 38169
28 Ga0068855_100014344 3300005563 Bacteria 9541
29 Ga0068855_100077275 3300005563 Bacteria 3862
30 Ga0068855_100175168 3300005563 Bacteria 2428
31 Ga0068855_100183879 3300005563 Bacteria 2362
32 Ga0068855_100363106 3300005563 Bacteria 1593
33 Ga0068856_100000006 3300005614 Bacteria 223827
34 Ga0068856_100143330 3300005614 Bacteria 2397
35 Ga0068852_100013694 3300005616 Bacteria 6214
36 Ga0075366_10004089 3300006195 Bacteria 7802
37 Ga0075366_10032509 3300006195 Bacteria 3071
38 Ga0097621_100003881 3300006237 Bacteria 10358
39 Ga0068871_100000622 3300006358 Bacteria 24425
40 Ga0068865_100007507 3300006881 Bacteria 6707
41 Ga0105240_10000075 3300009093 Bacteria 199596
42 Ga0105240_10108866 3300009093 Bacteria 3356
43 Ga0105240_10146673 3300009093 Bacteria 2815
44 Ga0105241_10004575 3300009174 Bacteria 10235
45 Ga0105241_10009106 3300009174 Bacteria 7305
46 Ga0105241_10235921 3300009174 Bacteria 1544
47 Ga0105242_10014527 3300009176 Bacteria 6101
48 Ga0105237_10000465 3300009545 Bacteria 57393
49 Ga0105237_10021544 3300009545 Bacteria 6626
50 Ga0105237_10023198 3300009545 Bacteria 6361
51 Ga0105237_10024810 3300009545 Bacteria 6135
52 Ga0105237_10059947 3300009545 Bacteria 3807
53 Ga0105238_10030758 3300009551 Bacteria 5465
54 Ga0105238_10084640 3300009551 Bacteria 3161
55 Ga0105239_10000026 3300010375 Bacteria 248302
56 Ga0105239_10000286 3300010375 Bacteria 74525
57 Ga0105239_10000886 3300010375 Bacteria 42475
58 Ga0105239_10002242 3300010375 Bacteria 24707
59 Ga0105239_10061479 3300010375 Bacteria 4122
60 Ga0105239_10240118 3300010375 Bacteria 2034
61 Ga0157373_10004111 3300013100 Bacteria 10972
62 Ga0157371_10000455 3300013102 Bacteria 50218
63 Ga0157371_10050979 3300013102 Bacteria 2941
64 Ga0157370_10062093 3300013104 Bacteria 3544
65 Ga0157370_10062380 3300013104 Bacteria 3535
66 Ga0157369_10098521 3300013105 Bacteria 3117
67 Ga0157374_10000125 3300013296 Bacteria 70183
68 Ga0157374_10057423 3300013296 Bacteria 3635
69 Ga0157378_10038747 3300013297 Bacteria 4225
70 Ga0163162_10000087 3300013306 Bacteria 85680
71 Ga0163162_10045336 3300013306 Bacteria 4405
72 Ga0163162_10049864 3300013306 Bacteria 4197
73 Ga0157372_10103242 3300013307 Bacteria 3257
74 Ga0157372_10296212 3300013307 Bacteria 1881
75 Ga0157375_10036705 3300013308 Bacteria 4690
76 Ga0207427_100564 3300025231 Bacteria 18732
77 Ga0209437_100230 3300025233 Bacteria 95882
78 Ga0209437_100526 3300025233 Bacteria 26615
79 Ga0209026_1001703 3300025250 Bacteria 9175
80 Ga0209026_1005441 3300025250 Bacteria 3429
81 Ga0209233_1000457 3300025261 Bacteria 26631
82 Ga0209233_1000960 3300025261 Bacteria 12457
83 Ga0209455_1002664 3300025272 Bacteria 6725
84 Ga0207647_10001219 3300025904 Bacteria 19782
85 Ga0207647_10006276 3300025904 Bacteria 8656
86 Ga0207647_10055622 3300025904 Bacteria 2431
87 Ga0207645_10013463 3300025907 Bacteria 5510
88 Ga0207705_10000317 3300025909 Bacteria 43987
89 Ga0207705_10077694 3300025909 Bacteria 2415
90 Ga0207654_10020832 3300025911 Bacteria 3482
91 Ga0207695_10000235 3300025913 Bacteria 146984
92 Ga0207695_10020240 3300025913 Bacteria 7627
93 Ga0207695_10058807 3300025913 Bacteria 3989
94 Ga0207695_10148436 3300025913 Bacteria 2286
95 Ga0207695_10150164 3300025913 Bacteria 2270
96 Ga0207671_10008704 3300025914 Bacteria 8564
97 Ga0207671_10011900 3300025914 Bacteria 7035
98 Ga0207671_10012357 3300025914 Bacteria 6869
99 Ga0207671_10014468 3300025914 Bacteria 6233
100 Ga0207671_10023453 3300025914 Bacteria 4654
101 Ga0207671_10029708 3300025914 Bacteria 4079
102 Ga0207671_10068327 3300025914 Bacteria 2647
103 Ga0207652_10038631 3300025921 Bacteria 4048
104 Ga0207706_10000009 3300025933 Bacteria 200607
105 Ga0207704_10000028 3300025938 Bacteria 122144
106 Ga0207667_10000477 3300025949 Bacteria 53347
107 Ga0207667_10006450 3300025949 Bacteria 14200
108 Ga0207667_10029037 3300025949 Bacteria 6002
109 Ga0207667_10187514 3300025949 Unclassified 2123
110 Ga0207640_10138982 3300025981 Bacteria 1768
111 Ga0207677_10003962 3300026023 Bacteria 7890
112 Ga0207639_10037757 3300026041 Bacteria 3590
113 Ga0207639_10208515 3300026041 Unclassified 1681
114 Ga0207702_10001827 3300026078 Bacteria 20950
115 Ga0207702_10040749 3300026078 Bacteria 3893
116 Ga0207702_10056311 3300026078 Bacteria 3338
117 Ga0207702_10249287 3300026078 Unclassified 1667
118 Ga0207648_10006336 3300026089 Bacteria 11766
119 Ga0207683_10006779 3300026121 Bacteria 9804
120 Ga0207698_10033528 3300026142 Bacteria 3732
121 Ga0268266_10000053 3300028379 Bacteria 295181
122 Ga0307515_10004899 3300028794 Bacteria 27348
123 Ga0307515_10013119 3300028794 Bacteria 15511
124 Ga0265327_10032132 3300031251 Bacteria 2941
125 Ga0307507_10005214 3300033179 Bacteria 21670
126 Ga0395899_0000237 3300037312 Bacteria 74249
127 Ga0395899_0002538 3300037312 Bacteria 14791
128 Ga0395900_0000431 3300037418 Bacteria 60172
129 Ga0395900_0004558 3300037418 Bacteria 14641
130 Ga0395898_0027065 3300037466 Bacteria 5761
131 Ga0395905_0001649 3300037471 Bacteria 26382
132 Ga0395905_0008807 3300037471 Bacteria 9915
133 Ga0395905_0009670 3300037471 Bacteria 9412
134 Ga0395901_0001158 3300038443 Bacteria 28004
135 Ga0395901_0001387 3300038443 Bacteria 25322
136 Ga0395901_0041273 3300038443 Bacteria 4781
137 Ga0466966_0052571 3300044684 Bacteria 2587
138 Ga0495638_0048537 3300046460 Bacteria 2657
139 Ga0495650_0001672 3300046471 Bacteria 20481
140 Ga0495585_0000359 3300046492 Bacteria 44166
141 Ga0495585_0010988 3300046492 Bacteria 5377
142 Ga0495583_0020050 3300046506 Bacteria 3474
143 Ga0495583_0065826 3300046506 Bacteria 1605
144 Ga0495606_0000074 3300046507 Bacteria 170848
145 Ga0495606_0083865 3300046507 Bacteria 1975
146 Ga0495610_0036224 3300046512 Bacteria 2523
147 Ga0495610_0064271 3300046512 Bacteria 1735
148 Ga0495616_0001269 3300046513 Bacteria 17736
149 Ga0495616_0003975 3300046513 Bacteria 9409
150 Ga0495631_0033729 3300046518 Bacteria 2298
151 Ga0495648_0032895 3300046524 Bacteria 3394
152 Ga0495609_0010656 3300046538 Bacteria 4399
153 Ga0495633_0000082 3300046558 Bacteria 125101
154 Ga0495668_0000017 3300046616 Bacteria 434025
155 Ga0495625_0000270 3300046660 Bacteria 80894
156 Ga0495625_0000783 3300046660 Bacteria 44183
157 Ga0495625_0012435 3300046660 Bacteria 6896
158 Ga0495625_0045617 3300046660 Bacteria 3167
159 Ga0495625_0051947 3300046660 Bacteria 2936
160 Ga0495625_0066676 3300046660 Bacteria 2535
161 Ga0495661_0041993 3300046665 Bacteria 2823
162 Ga0495661_0056483 3300046665 Bacteria 2348
163 Ga0495649_0000082 3300046694 Bacteria 82099
164 Ga0495660_0006117 3300046810 Bacteria 7145
165 Ga0495687_005647 3300047443 Bacteria 7903
166 Ga0495687_006209 3300047443 Bacteria 7379
167 Ga0495686_0000303 3300047472 Bacteria 84544
168 Ga0495686_0005200 3300047472 Bacteria 10358
169 Ga0495686_0044401 3300047472 Bacteria 2814
170 Ga0495678_008155 3300049459 Bacteria 5326
171 nmdc:mga0k408_4057_c1 3300050493 Bacteria 7768
172 nmdc:mga0k408_46789_c1 3300050493 Bacteria 2499
173 nmdc:mga08y16_127282_c1 3300050511 Bacteria 2649
174 Ga0500635_0004971 3300053080 Bacteria 3459
175 Ga0500608_038318 3300053122 Bacteria 2293
176 Ga0500618_000027 3300053125 Bacteria 142903
177 Ga0500622_0002235 3300053156 Bacteria 14235
178 Ga0500624_000168 3300053157 Bacteria 26458

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026078 Ga0207702_10249287 Ga0207702_102492871 370
2 3300025949 Ga0207667_10187514 Ga0207667_101875142 405
3 3300005539 Ga0068853_100018436 Ga0068853_1000184366 406
4 3300026041 Ga0207639_10208515 Ga0207639_102085151 406
5 3300005548 Ga0070665_100000061 Ga0070665_1000000612 428
6 3300028379 Ga0268266_10000053 Ga0268266_10000053197 428
7 3300013306 Ga0163162_10000087 Ga0163162_100000872 439
8 3300026078 Ga0207702_10056311 Ga0207702_100563114 439
9 3300013306 Ga0163162_10049864 Ga0163162_100498643 440
10 3300025913 Ga0207695_10150164 Ga0207695_101501641 441
11 3300025914 Ga0207671_10029708 Ga0207671_100297081 441
12 3300038443 Ga0395901_0001387 Ga0395901_0001387_21768_23102 442
13 3300053156 Ga0500622_0002235 Ga0500622_0002235_2320_3711 442
14 3300005614 Ga0068856_100143330 Ga0068856_1001433303 443
15 3300031251 Ga0265327_10032132 Ga0265327_100321327 443
16 3300050511 nmdc:mga08y16_127282_c1 nmdc:mga08y16_127282_c1_849_2204 443
17 3300046471 Ga0495650_0001672 Ga0495650_0001672_376_1761 444
18 3300046506 Ga0495583_0065826 Ga0495583_0065826_180_1592 444
19 3300047472 Ga0495686_0005200 Ga0495686_0005200_8945_10315 444
20 3300037471 Ga0395905_0008807 Ga0395905_0008807_1838_3187 445
21 3300009093 Ga0105240_10108866 Ga0105240_101088662 447
22 3300025913 Ga0207695_10058807 Ga0207695_100588074 447
23 3300047443 Ga0495687_005647 Ga0495687_005647_706_2097 447
24 3300005563 Ga0068855_100000831 Ga0068855_1000008313 448
25 3300025949 Ga0207667_10029037 Ga0207667_100290372 448
26 3300046507 Ga0495606_0083865 Ga0495606_0083865_506_1852 448
27 3300002737 JGI25162J39368_1002054 JGI25162J39368_10020548 450
28 3300002772 JGI25164J39214_1000613 JGI25164J39214_100061313 450
29 3300003214 JGI25165J46597_1001008 JGI25165J46597_10010082 450
30 3300025231 Ga0207427_100564 Ga0207427_1005641 450
31 3300025233 Ga0209437_100526 Ga0209437_1005261 450
32 3300025261 Ga0209233_1000457 Ga0209233_10004571 450
33 3300025914 Ga0207671_10011900 Ga0207671_100119007 450
34 3300009551 Ga0105238_10084640 Ga0105238_100846401 451
35 3300010375 Ga0105239_10240118 Ga0105239_102401181 451
36 3300025272 Ga0209455_1002664 Ga0209455_10026645 451
37 iso_pu_bacteria 2852623160 2852626223 453
38 iso_pu_bacteria 2884933994 2884934677 453
39 iso_pu_bacteria 2919437846 2919439263 453
40 iso_pu_bacteria 2928078545 2928084098 453
41 iso_pu_bacteria 2928147474 2928152865 453
42 iso_pu_bacteria 2977232053 2977235190 454
43 3300005530 Ga0070679_100027955 Ga0070679_1000279555 455
44 3300025250 Ga0209026_1005441 Ga0209026_10054411 455
45 3300025921 Ga0207652_10038631 Ga0207652_100386311 455
46 iso_pu_bacteria 2599185184 2599481939 455
47 iso_pu_bacteria 2932082852 2932088452 455
48 3300003320 rootH2_10227711 rootH2_102277111 456
49 3300005563 Ga0068855_100363106 Ga0068855_1003631062 456
50 3300009174 Ga0105241_10235921 Ga0105241_102359211 456
51 3300010375 Ga0105239_10000026 Ga0105239_10000026203 456
52 3300013100 Ga0157373_10004111 Ga0157373_100041112 456
53 3300013102 Ga0157371_10000455 Ga0157371_100004552 456
54 3300013104 Ga0157370_10062093 Ga0157370_100620934 456
55 3300013104 Ga0157370_10062380 Ga0157370_100623801 456
56 3300013297 Ga0157378_10038747 Ga0157378_100387475 456
57 3300013307 Ga0157372_10103242 Ga0157372_101032423 456
58 3300013308 Ga0157375_10036705 Ga0157375_100367055 456
59 3300025250 Ga0209026_1001703 Ga0209026_10017038 456
60 3300025261 Ga0209233_1000960 Ga0209233_100096012 456
61 3300025904 Ga0207647_10006276 Ga0207647_100062767 456
62 3300025913 Ga0207695_10148436 Ga0207695_101484362 456
63 3300026078 Ga0207702_10040749 Ga0207702_100407495 456
64 3300037312 Ga0395899_0000237 Ga0395899_0000237_72487_73860 456
65 3300044684 Ga0466966_0052571 Ga0466966_0052571_1158_2531 456
66 3300047472 Ga0495686_0000303 Ga0495686_0000303_82731_84131 456
67 3300053080 Ga0500635_0004971 Ga0500635_0004971_602_1972 456
68 3300001990 JGI24737J22298_10000681 JGI24737J22298_100006818 457
69 3300002067 JGI24735J21928_10000005 JGI24735J21928_100000052 457
70 3300002737 JGI25162J39368_1000682 JGI25162J39368_10006822 457
71 3300003316 rootH1_10080216 rootH1_100802161 457
72 3300003316 rootH1_10100651 rootH1_101006514 457
73 3300003320 rootH2_10047243 rootH2_100472438 457
74 3300003320 rootH2_10233854 rootH2_102338542 457
75 3300003323 rootH1_10007213 rootH1_100072131 457
76 3300003323 rootH1_10330766 rootH1_103307662 457
77 3300005288 Ga0065714_10085087 Ga0065714_100850871 457
78 3300005563 Ga0068855_100014344 Ga0068855_1000143449 457
79 3300005563 Ga0068855_100077275 Ga0068855_1000772754 457
80 3300005563 Ga0068855_100175168 Ga0068855_1001751682 457
81 3300005614 Ga0068856_100000006 Ga0068856_100000006216 457
82 3300006195 Ga0075366_10004089 Ga0075366_100040892 457
83 3300006195 Ga0075366_10032509 Ga0075366_100325092 457
84 3300009093 Ga0105240_10000075 Ga0105240_100000751 457
85 3300009545 Ga0105237_10000465 Ga0105237_1000046554 457
86 3300009545 Ga0105237_10021544 Ga0105237_100215441 457
87 3300009545 Ga0105237_10023198 Ga0105237_100231981 457
88 3300009545 Ga0105237_10059947 Ga0105237_100599472 457
89 3300010375 Ga0105239_10000286 Ga0105239_1000028668 457
90 3300010375 Ga0105239_10000886 Ga0105239_1000088642 457
91 3300010375 Ga0105239_10002242 Ga0105239_100022423 457
92 3300010375 Ga0105239_10061479 Ga0105239_100614795 457
93 3300013306 Ga0163162_10045336 Ga0163162_100453362 457
94 3300025233 Ga0209437_100230 Ga0209437_10023086 457
95 3300025904 Ga0207647_10055622 Ga0207647_100556222 457
96 3300025909 Ga0207705_10000317 Ga0207705_1000031733 457
97 3300025909 Ga0207705_10077694 Ga0207705_100776942 457
98 3300025913 Ga0207695_10000235 Ga0207695_10000235133 457
99 3300025914 Ga0207671_10008704 Ga0207671_1000870410 457
100 3300025914 Ga0207671_10012357 Ga0207671_100123571 457
101 3300025914 Ga0207671_10014468 Ga0207671_100144686 457
102 3300025914 Ga0207671_10068327 Ga0207671_100683273 457
103 3300025949 Ga0207667_10000477 Ga0207667_100004772 457
104 3300025949 Ga0207667_10006450 Ga0207667_100064501 457
105 3300025981 Ga0207640_10138982 Ga0207640_101389821 457
106 3300026078 Ga0207702_10001827 Ga0207702_100018272 457
107 3300028794 Ga0307515_10004899 Ga0307515_1000489929 457
108 3300028794 Ga0307515_10013119 Ga0307515_100131193 457
109 3300033179 Ga0307507_10005214 Ga0307507_1000521426 457
110 3300037471 Ga0395905_0009670 Ga0395905_0009670_3102_4511 457
111 3300038443 Ga0395901_0041273 Ga0395901_0041273_2974_4383 457
112 3300046460 Ga0495638_0048537 Ga0495638_0048537_1053_2459 457
113 3300046492 Ga0495585_0000359 Ga0495585_0000359_341_1747 457
114 3300046492 Ga0495585_0010988 Ga0495585_0010988_725_2104 457
115 3300046506 Ga0495583_0020050 Ga0495583_0020050_1471_2856 457
116 3300046507 Ga0495606_0000074 Ga0495606_0000074_792_2183 457
117 3300046512 Ga0495610_0036224 Ga0495610_0036224_725_2131 457
118 3300046512 Ga0495610_0064271 Ga0495610_0064271_49_1434 457
119 3300046513 Ga0495616_0001269 Ga0495616_0001269_334_1740 457
120 3300046513 Ga0495616_0003975 Ga0495616_0003975_7482_8867 457
121 3300046524 Ga0495648_0032895 Ga0495648_0032895_447_1826 457
122 3300046538 Ga0495609_0010656 Ga0495609_0010656_952_2331 457
123 3300046558 Ga0495633_0000082 Ga0495633_0000082_761_2140 457
124 3300046616 Ga0495668_0000017 Ga0495668_0000017_566_1951 457
125 3300046660 Ga0495625_0000270 Ga0495625_0000270_79108_80493 457
126 3300046660 Ga0495625_0000783 Ga0495625_0000783_426_1805 457
127 3300046660 Ga0495625_0012435 Ga0495625_0012435_443_1822 457
128 3300046660 Ga0495625_0045617 Ga0495625_0045617_921_2300 457
129 3300046660 Ga0495625_0051947 Ga0495625_0051947_95_1471 457
130 3300046660 Ga0495625_0066676 Ga0495625_0066676_455_1834 457
131 3300046665 Ga0495661_0041993 Ga0495661_0041993_817_2202 457
132 3300046665 Ga0495661_0056483 Ga0495661_0056483_720_2126 457
133 3300046694 Ga0495649_0000082 Ga0495649_0000082_80328_81713 457
134 3300046810 Ga0495660_0006117 Ga0495660_0006117_357_1748 457
135 3300047472 Ga0495686_0044401 Ga0495686_0044401_940_2346 457
136 3300049459 Ga0495678_008155 Ga0495678_008155_3513_4919 457
137 3300050493 nmdc:mga0k408_4057_c1 nmdc:mga0k408_4057_c1_712_2091 457
138 3300053122 Ga0500608_038318 Ga0500608_038318_409_1797 457
139 3300053125 Ga0500618_000027 Ga0500618_000027_817_2196 457
140 3300053157 Ga0500624_000168 Ga0500624_000168_24783_26159 457
141 3300001904 JGI24736J21556_1004271 JGI24736J21556_10042713 458
142 3300003320 rootH2_10018482 rootH2_100184822 458
143 3300005328 Ga0070676_10007187 Ga0070676_100071872 458
144 3300005338 Ga0068868_100125764 Ga0068868_1001257641 458
145 3300005364 Ga0070673_100008632 Ga0070673_1000086328 458
146 3300005456 Ga0070678_100017640 Ga0070678_1000176405 458
147 3300005457 Ga0070662_100002313 Ga0070662_1000023131 458
148 3300005459 Ga0068867_100008159 Ga0068867_1000081598 458
149 3300005563 Ga0068855_100183879 Ga0068855_1001838792 458
150 3300005616 Ga0068852_100013694 Ga0068852_1000136942 458
151 3300006237 Ga0097621_100003881 Ga0097621_1000038819 458
152 3300006358 Ga0068871_100000622 Ga0068871_10000062222 458
153 3300006881 Ga0068865_100007507 Ga0068865_1000075078 458
154 3300009093 Ga0105240_10146673 Ga0105240_101466731 458
155 3300009174 Ga0105241_10004575 Ga0105241_100045752 458
156 3300009174 Ga0105241_10009106 Ga0105241_100091062 458
157 3300009176 Ga0105242_10014527 Ga0105242_100145272 458
158 3300009545 Ga0105237_10024810 Ga0105237_100248107 458
159 3300009551 Ga0105238_10030758 Ga0105238_100307585 458
160 3300013102 Ga0157371_10050979 Ga0157371_100509791 458
161 3300013105 Ga0157369_10098521 Ga0157369_100985211 458
162 3300013296 Ga0157374_10000125 Ga0157374_100001251 458
163 3300013296 Ga0157374_10057423 Ga0157374_100574235 458
164 3300013307 Ga0157372_10296212 Ga0157372_102962121 458
165 3300025904 Ga0207647_10001219 Ga0207647_100012191 458
166 3300025907 Ga0207645_10013463 Ga0207645_100134632 458
167 3300025911 Ga0207654_10020832 Ga0207654_100208322 458
168 3300025913 Ga0207695_10020240 Ga0207695_100202408 458
169 3300025914 Ga0207671_10023453 Ga0207671_100234532 458
170 3300025933 Ga0207706_10000009 Ga0207706_100000091 458
171 3300025938 Ga0207704_10000028 Ga0207704_100000283 458
172 3300026023 Ga0207677_10003962 Ga0207677_100039628 458
173 3300026041 Ga0207639_10037757 Ga0207639_100377575 458
174 3300026089 Ga0207648_10006336 Ga0207648_1000633610 458
175 3300026121 Ga0207683_10006779 Ga0207683_100067799 458
176 3300026142 Ga0207698_10033528 Ga0207698_100335285 458
177 3300037312 Ga0395899_0002538 Ga0395899_0002538_534_1946 458
178 3300037418 Ga0395900_0000431 Ga0395900_0000431_58226_59638 458
179 3300037418 Ga0395900_0004558 Ga0395900_0004558_997_2376 458
180 3300037466 Ga0395898_0027065 Ga0395898_0027065_3887_5299 458
181 3300037471 Ga0395905_0001649 Ga0395905_0001649_24436_25848 458
182 3300038443 Ga0395901_0001158 Ga0395901_0001158_939_2351 458
183 3300046518 Ga0495631_0033729 Ga0495631_0033729_350_1726 458
184 3300047443 Ga0495687_006209 Ga0495687_006209_5019_6395 458
185 3300050493 nmdc:mga0k408_46789_c1 nmdc:mga0k408_46789_c1_434_1816 458

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13636

Methyltranf_PUA

RNA-binding PUA-like domain of methyltransferase RsmF

423

471

0.98

PF17125

Methyltr_RsmF_N

N-terminal domain of 16S rRNA methyltransferase RsmF

32

111

0.92

PF01189

Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

121

315

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
5zvh-assembly2.cif.gz_A the crystal structure of nsun6 from pyrococcus horikoshii with sfg 0.8711 59 299
8fky-assembly1.cif.gz_SY human nucleolar pre-60s ribosomal subunit (state f) 0.8704 22 296
8esq-assembly1.cif.gz_q ytm1 associated nascent 60s ribosome state 2 0.8664 22 296
2yxl-assembly1.cif.gz_A crystal structure of ph0851 0.8631 6 296
3m6w-assembly1.cif.gz_A multi-site-specific 16s rrna methyltransferase rsmf from thermus thermophilus in space group p21212 in complex with s-adenosyl-l-methionine 0.8505 7 438
ID Description Score Start End Superfamily
af_Q8I5B4_187_375_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8805 87 297 3.40.50.150
2yxlA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8797 83 296 3.40.50.150
2yxlA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8757 83 296 3.40.50.150
af_Q8I5B4_187_375_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8718 87 297 3.40.50.150
af_P40991_338_614_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8548 102 296 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A7Y6XMS4-F1-model_v4 rRNA methyltransferase 0.9647 81 451 GO:0001510
GO:0003723
GO:0008173
AF-A0A7K1YBE8-F1-model_v4 RNA methyltransferase 0.9615 1 456 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A4Q3R883-F1-model_v4 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.9611 45 389 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A150XA78-F1-model_v4 SAM-dependent MTase RsmB/NOP-type domain-containing protein 0.9596 6 451 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A7V9SSA0-F1-model_v4 RNA methyltransferase 0.9576 6 454 GO:0001510
GO:0003723
GO:0006364
GO:0008173

Feature Viewer

pLDDT pTM Quality
86.38 0.88 High
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Predicted Structure (AlphaFold2)

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