F283127

General Info

Members Datasets Scaffolds Average Seq Length
184 109 368 159

Family's Representative Sequence

Representative Sequence 3300046511|Ga0495608_0196297|Ga0495608_0196297_299_820
Length 173
Sequence MADELETDTEIALMASEEVTVTPGPPAAEVVEIWTDGGCKPNPGPGGWAAILRFRGVERELSGAEGATTNNGMVVTAAASALETLKRPCRVVLHTDSEYVRNGVTRWHQGWVRRNWRNAAGDPVANMDLWRRLLDAAKDHEIEWRWVRGHSGDPMNERADVLATAAREAMSRG

Samples

Sample ID Description Type Environment
1 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
2 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
3 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
4 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
15 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
18 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
19 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
20 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
23 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
24 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
25 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
26 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
27 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
44 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
45 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
46 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
47 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
48 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
49 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
50 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
51 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
52 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
53 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
54 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
55 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
56 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
57 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
58 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
59 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
60 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
61 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
62 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
63 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
64 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
65 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
68 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
69 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
70 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
71 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
72 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
75 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
76 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
77 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
78 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
79 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
80 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
81 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
82 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
83 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
84 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
85 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
86 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
87 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
88 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
89 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
90 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
91 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
92 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
93 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
103 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
104 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
105 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
106 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
107 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
108 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
109 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.28
Metatranscriptomes 1.09
Isolates 1.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.09
Nodule 0
Rhizoplane 0.54
Rhizosphere 80.98
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495608_0196297 3300046511 Bacteria 1273
2 Ga0068868_100425745 3300005338 Bacteria 1150
3 Ga0070667_100219695 3300005367 Bacteria 1691
4 Ga0070709_10484719 3300005434 Bacteria 937
5 Ga0070714_100073287 3300005435 Bacteria 2967
6 Ga0070714_100266635 3300005435 Bacteria 1587
7 Ga0070714_100964704 3300005435 Bacteria 829
8 Ga0070713_100022844 3300005436 Bacteria 4841
9 Ga0070713_100323788 3300005436 Bacteria 1424
10 Ga0070710_10627882 3300005437 Bacteria 751
11 Ga0070711_100380707 3300005439 Bacteria 1141
12 Ga0070679_100049319 3300005530 Bacteria 4193
13 Ga0068855_100712346 3300005563 Bacteria 1073
14 Ga0068856_100664028 3300005614 Bacteria 1063
15 Ga0068858_100049409 3300005842 Bacteria 3895
16 Ga0070717_10154695 3300006028 Bacteria 1986
17 Ga0075364_10007846 3300006051 Bacteria 6353
18 Ga0070712_100232407 3300006175 Bacteria 1465
19 Ga0105240_11017044 3300009093 Bacteria 885
20 Ga0105245_10430458 3300009098 Bacteria 1324
21 Ga0105242_10143750 3300009176 Bacteria 2073
22 Ga0105248_10205513 3300009177 Bacteria 2219
23 Ga0105239_10364014 3300010375 Bacteria 1633
24 Ga0105239_11721858 3300010375 Bacteria 726
25 Ga0157369_10258333 3300013105 Bacteria 1817
26 Ga0157369_11136756 3300013105 Bacteria 798
27 Ga0182008_10216775 3300014497 Bacteria 978
28 Ga0157376_10104693 3300014969 Bacteria 2480
29 Ga0213874_10050396 3300021377 Bacteria 1276
30 Ga0213875_10001964 3300021388 Bacteria 12725
31 Ga0213875_10117155 3300021388 Bacteria 1244
32 Ga0213875_10139873 3300021388 Bacteria 1132
33 Ga0213875_10370433 3300021388 Bacteria 681
34 Ga0213871_10176426 3300021441 Bacteria 659
35 Ga0207699_10482546 3300025906 Bacteria 893
36 Ga0207705_10619310 3300025909 Bacteria 842
37 Ga0207693_10004498 3300025915 Bacteria 11795
38 Ga0207693_10076674 3300025915 Bacteria 2618
39 Ga0207693_10223125 3300025915 Bacteria 1480
40 Ga0207663_10204689 3300025916 Bacteria 1426
41 Ga0207663_10359997 3300025916 Bacteria 1104
42 Ga0207687_10395088 3300025927 Bacteria 1136
43 Ga0207700_10244055 3300025928 Bacteria 1532
44 Ga0207700_10399194 3300025928 Bacteria 1205
45 Ga0207700_10722026 3300025928 Bacteria 890
46 Ga0207664_10120543 3300025929 Bacteria 2194
47 Ga0207664_10843018 3300025929 Bacteria 824
48 Ga0207686_10110532 3300025934 Bacteria 1853
49 Ga0207665_10131830 3300025939 Bacteria 1775
50 Ga0207711_10140137 3300025941 Bacteria 2175
51 Ga0207661_10880133 3300025944 Bacteria 825
52 Ga0207667_10732821 3300025949 Bacteria 989
53 Ga0207658_10280085 3300025986 Bacteria 1429
54 Ga0207703_10161491 3300026035 Bacteria 1963
55 Ga0207702_10189354 3300026078 Bacteria 1900
56 Ga0207702_10515837 3300026078 Bacteria 1166
57 Ga0207683_10631195 3300026121 Bacteria 992
58 Ga0265338_10612534 3300028800 Bacteria 758
59 Ga0265338_10637537 3300028800 Bacteria 739
60 Ga0265762_1056244 3300030760 Bacteria 800
61 Ga0265760_10119671 3300031090 Bacteria 844
62 Ga0373926_0021093 3300035083 Bacteria 2254
63 Ga0373923_0101893 3300035111 Bacteria 1267
64 Ga0373936_0098867 3300035113 Bacteria 1230
65 Ga0373954_0009134 3300035118 Bacteria 4362
66 Ga0373954_0541407 3300035118 Bacteria 577
67 Ga0373957_0067666 3300035120 Bacteria 1392
68 Ga0373943_0192994 3300035170 Bacteria 1124
69 Ga0373943_0627027 3300035170 Bacteria 634
70 Ga0373946_0058710 3300035171 Bacteria 1631
71 Ga0373955_0007627 3300035172 Bacteria 4985
72 Ga0373955_0462929 3300035172 Bacteria 773
73 Ga0373935_0161133 3300035692 Bacteria 1529
74 Ga0373927_0035916 3300035695 Bacteria 3224
75 Ga0373927_0126297 3300035695 Bacteria 1670
76 Ga0373927_0795555 3300035695 Bacteria 625
77 Ga0373933_0099512 3300035724 Bacteria 1803
78 Ga0373933_0117788 3300035724 Bacteria 1661
79 Ga0373933_0359700 3300035724 Bacteria 946
80 Ga0373933_0637157 3300035724 Bacteria 700
81 Ga0373947_0098753 3300035725 Bacteria 1832
82 Ga0373947_0393295 3300035725 Bacteria 934
83 Ga0373937_0000824 3300036401 Bacteria 26565
84 Ga0373937_0003327 3300036401 Bacteria 13492
85 Ga0373937_0164329 3300036401 Bacteria 2081
86 Ga0373937_0296311 3300036401 Bacteria 1528
87 Ga0373937_1496396 3300036401 Bacteria 622
88 Ga0373925_0072057 3300037068 Bacteria 2614
89 Ga0436364_0254968 3300037853 Bacteria 8481
90 Ga0436364_0258266 3300037853 Bacteria 1466
91 Ga0436364_0324900 3300037853 Bacteria 5580
92 Ga0436364_0760016 3300037853 Bacteria 994
93 Ga0436364_0988297 3300037853 Bacteria 7399
94 Ga0436364_1055886 3300037853 Bacteria 1626
95 Ga0436364_1169065 3300037853 Bacteria 678
96 Ga0436364_1323041 3300037853 Bacteria 1476
97 Ga0436364_1462663 3300037853 Bacteria 7070
98 Ga0436364_1506309 3300037853 Bacteria 2649
99 Ga0436364_1558706 3300037853 Bacteria 863
100 Ga0436365_0040446 3300039437 Bacteria 760
101 Ga0436365_0618733 3300039437 Bacteria 953
102 Ga0436365_0814555 3300039437 Bacteria 2188
103 Ga0436365_0913168 3300039437 Bacteria 847
104 Ga0436365_1914319 3300039437 Bacteria 1254
105 Ga0436365_1935578 3300039437 Bacteria 843
106 Ga0436360_0007239 3300039438 Bacteria 4790
107 Ga0436360_0670889 3300039438 Bacteria 3631
108 Ga0436360_0726118 3300039438 Bacteria 1303
109 Ga0436360_0823560 3300039438 Bacteria 1781
110 Ga0436360_1241662 3300039438 Bacteria 2964
111 Ga0436360_1254115 3300039438 Bacteria 589
112 Ga0436360_1317658 3300039438 Bacteria 1244
113 Ga0436361_1008863 3300039447 Bacteria 707
114 Ga0436361_1181053 3300039447 Bacteria 654
115 Ga0436363_0430129 3300039450 Bacteria 732
116 Ga0436363_0519066 3300039450 Bacteria 828
117 Ga0436363_0695963 3300039450 Bacteria 1953
118 Ga0436363_0999285 3300039450 Bacteria 688
119 Ga0436363_1011434 3300039450 Bacteria 933
120 Ga0436363_1173450 3300039450 Bacteria 1423
121 Ga0436363_1355658 3300039450 Bacteria 956
122 Ga0436362_0233658 3300039453 Bacteria 713
123 Ga0436362_0276780 3300039453 Bacteria 621
124 Ga0436362_0881603 3300039453 Bacteria 821
125 Ga0436362_1209755 3300039453 Bacteria 887
126 Ga0451576_0802122 3300045051 Bacteria 989
127 Ga0451576_1776430 3300045051 Bacteria 638
128 Ga0466958_0898316 3300045836 Bacteria 578
129 Ga0495592_0091335 3300046454 Bacteria 2184
130 Ga0495592_0446105 3300046454 Bacteria 811
131 Ga0495603_0489061 3300046455 Bacteria 705
132 Ga0495651_0004898 3300046462 Bacteria 10240
133 Ga0495651_0051025 3300046462 Bacteria 3191
134 Ga0495664_0005387 3300046477 Bacteria 7023
135 Ga0495664_0470572 3300046477 Bacteria 752
136 Ga0495628_0415253 3300046516 Bacteria 981
137 Ga0495628_0792484 3300046516 Bacteria 663
138 Ga0495630_0273917 3300046517 Bacteria 1289
139 Ga0495630_0858899 3300046517 Bacteria 692
140 Ga0495652_0565494 3300046529 Bacteria 780
141 Ga0495640_0162139 3300046533 Bacteria 1432
142 Ga0495587_0072027 3300046536 Bacteria 2009
143 Ga0495645_0050012 3300046543 Bacteria 3043
144 Ga0495667_0008923 3300046559 Bacteria 6817
145 Ga0495634_0365423 3300046642 Bacteria 862
146 Ga0495599_0010710 3300046678 Bacteria 5615
147 Ga0495623_0211177 3300046679 Bacteria 1111
148 Ga0495646_0072702 3300046680 Bacteria 2022
149 Ga0495646_0234382 3300046680 Bacteria 988
150 Ga0495647_0207152 3300046681 Bacteria 862
151 Ga0495658_0393086 3300046683 Bacteria 883
152 Ga0495613_0373756 3300046689 Bacteria 976
153 Ga0495604_0185466 3300047317 Bacteria 1453
154 Ga0495674_0042794 3300047319 Bacteria 4037
155 Ga0495680_0085029 3300047322 Bacteria 2383
156 Ga0495675_0008439 3300047444 Bacteria 6383
157 Ga0495675_0259104 3300047444 Bacteria 1042
158 Ga0495684_0367858 3300047471 Bacteria 1017
159 Ga0495684_0600597 3300047471 Bacteria 742
160 Ga0495602_0007703 3300048088 Bacteria 11258
161 Ga0495602_0233999 3300048088 Bacteria 1378
162 Ga0496110_1317613 3300048913 Bacteria 631
163 Ga0501033_0009907 3300049570 Bacteria 7317
164 Ga0501034_0930418 3300049571 Bacteria 756
165 Ga0501037_0034674 3300049573 Bacteria 3723
166 Ga0501038_0032924 3300049574 Bacteria 4568
167 Ga0501043_0554994 3300049579 Bacteria 853
168 Ga0501047_0266185 3300049581 Bacteria 1561
169 Ga0501073_0077882 3300049589 Bacteria 2307
170 Ga0501073_0722864 3300049589 Bacteria 687
171 Ga0501035_0139055 3300049822 Bacteria 2112
172 Ga0501035_0667645 3300049822 Bacteria 841
173 Ga0501044_0177295 3300049823 Bacteria 2100
174 nmdc:mga00v17_446_c1 3300050491 Bacteria 23224
175 Ga0495601_0016725 3300053077 Bacteria 4447
176 Ga0495601_0320681 3300053077 Bacteria 1009
177 Ga0495612_0002491 3300053078 Bacteria 7590
178 Ga0495595_0243360 3300053084 Bacteria 900
179 Ga0495619_0063340 3300053085 Bacteria 2463
180 Ga0495619_0178180 3300053085 Bacteria 1470
181 Ga0495619_0532140 3300053085 Bacteria 807
182 2909402986 2909399089 Bacteria 3922598
183 641337053 641228493 Bacteria 3999591
184 643392777 643348555 Bacteria 3914947
185 Ga0495608_0196297
186 Ga0068868_100425745
187 Ga0070667_100219695
188 Ga0070709_10484719
189 Ga0070714_100073287
190 Ga0070714_100266635
191 Ga0070714_100964704
192 Ga0070713_100022844
193 Ga0070713_100323788
194 Ga0070710_10627882
195 Ga0070711_100380707
196 Ga0070679_100049319
197 Ga0068855_100712346
198 Ga0068856_100664028
199 Ga0068858_100049409
200 Ga0070717_10154695
201 Ga0075364_10007846
202 Ga0070712_100232407
203 Ga0105240_11017044
204 Ga0105245_10430458
205 Ga0105242_10143750
206 Ga0105248_10205513
207 Ga0105239_10364014
208 Ga0105239_11721858
209 Ga0157369_10258333
210 Ga0157369_11136756
211 Ga0182008_10216775
212 Ga0157376_10104693
213 Ga0213874_10050396
214 Ga0213875_10001964
215 Ga0213875_10117155
216 Ga0213875_10139873
217 Ga0213875_10370433
218 Ga0213871_10176426
219 Ga0207699_10482546
220 Ga0207705_10619310
221 Ga0207693_10004498
222 Ga0207693_10076674
223 Ga0207693_10223125
224 Ga0207663_10204689
225 Ga0207663_10359997
226 Ga0207687_10395088
227 Ga0207700_10244055
228 Ga0207700_10399194
229 Ga0207700_10722026
230 Ga0207664_10120543
231 Ga0207664_10843018
232 Ga0207686_10110532
233 Ga0207665_10131830
234 Ga0207711_10140137
235 Ga0207661_10880133
236 Ga0207667_10732821
237 Ga0207658_10280085
238 Ga0207703_10161491
239 Ga0207702_10189354
240 Ga0207702_10515837
241 Ga0207683_10631195
242 Ga0265338_10612534
243 Ga0265338_10637537
244 Ga0265762_1056244
245 Ga0265760_10119671
246 Ga0373926_0021093
247 Ga0373923_0101893
248 Ga0373936_0098867
249 Ga0373954_0009134
250 Ga0373954_0541407
251 Ga0373957_0067666
252 Ga0373943_0192994
253 Ga0373943_0627027
254 Ga0373946_0058710
255 Ga0373955_0007627
256 Ga0373955_0462929
257 Ga0373935_0161133
258 Ga0373927_0035916
259 Ga0373927_0126297
260 Ga0373927_0795555
261 Ga0373933_0099512
262 Ga0373933_0117788
263 Ga0373933_0359700
264 Ga0373933_0637157
265 Ga0373947_0098753
266 Ga0373947_0393295
267 Ga0373937_0000824
268 Ga0373937_0003327
269 Ga0373937_0164329
270 Ga0373937_0296311
271 Ga0373937_1496396
272 Ga0373925_0072057
273 Ga0436364_0254968
274 Ga0436364_0258266
275 Ga0436364_0324900
276 Ga0436364_0760016
277 Ga0436364_0988297
278 Ga0436364_1055886
279 Ga0436364_1169065
280 Ga0436364_1323041
281 Ga0436364_1462663
282 Ga0436364_1506309
283 Ga0436364_1558706
284 Ga0436365_0040446
285 Ga0436365_0618733
286 Ga0436365_0814555
287 Ga0436365_0913168
288 Ga0436365_1914319
289 Ga0436365_1935578
290 Ga0436360_0007239
291 Ga0436360_0670889
292 Ga0436360_0726118
293 Ga0436360_0823560
294 Ga0436360_1241662
295 Ga0436360_1254115
296 Ga0436360_1317658
297 Ga0436361_1008863
298 Ga0436361_1181053
299 Ga0436363_0430129
300 Ga0436363_0519066
301 Ga0436363_0695963
302 Ga0436363_0999285
303 Ga0436363_1011434
304 Ga0436363_1173450
305 Ga0436363_1355658
306 Ga0436362_0233658
307 Ga0436362_0276780
308 Ga0436362_0881603
309 Ga0436362_1209755
310 Ga0451576_0802122
311 Ga0451576_1776430
312 Ga0466958_0898316
313 Ga0495592_0091335
314 Ga0495592_0446105
315 Ga0495603_0489061
316 Ga0495651_0004898
317 Ga0495651_0051025
318 Ga0495664_0005387
319 Ga0495664_0470572
320 Ga0495628_0415253
321 Ga0495628_0792484
322 Ga0495630_0273917
323 Ga0495630_0858899
324 Ga0495652_0565494
325 Ga0495640_0162139
326 Ga0495587_0072027
327 Ga0495645_0050012
328 Ga0495667_0008923
329 Ga0495634_0365423
330 Ga0495599_0010710
331 Ga0495623_0211177
332 Ga0495646_0072702
333 Ga0495646_0234382
334 Ga0495647_0207152
335 Ga0495658_0393086
336 Ga0495613_0373756
337 Ga0495604_0185466
338 Ga0495674_0042794
339 Ga0495680_0085029
340 Ga0495675_0008439
341 Ga0495675_0259104
342 Ga0495684_0367858
343 Ga0495684_0600597
344 Ga0495602_0007703
345 Ga0495602_0233999
346 Ga0496110_1317613
347 Ga0501033_0009907
348 Ga0501034_0930418
349 Ga0501037_0034674
350 Ga0501038_0032924
351 Ga0501043_0554994
352 Ga0501047_0266185
353 Ga0501073_0077882
354 Ga0501073_0722864
355 Ga0501035_0139055
356 Ga0501035_0667645
357 Ga0501044_0177295
358 nmdc:mga00v17_446_c1
359 Ga0495601_0016725
360 Ga0495601_0320681
361 Ga0495612_0002491
362 Ga0495595_0243360
363 Ga0495619_0063340
364 Ga0495619_0178180
365 Ga0495619_0532140
366 2909402986
367 641337053
368 643392777

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00075

RNase_H

RNase H

28

168

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
2z1j-assembly1.cif.gz_A crystal structure of e.coli rnase hi surface charged mutant(q4r/t40e/q72h/q76k/q80e/t92k/q105k/q113r/q115k/n143k/t145k) 0.9661 17 157
3h08-assembly2.cif.gz_B crystal structure of the ribonuclease h1 from chlorobium tepidum 0.9627 18 158
1jl2-assembly1.cif.gz_C crystal structure of tceo rnase h-a chimera combining the folding core from t. thermophilus rnase h and the remaining region of e. coli rnase h 0.9616 18 157
1wsj-assembly3.cif.gz_C crystal structure of e.coli rnase hi active site mutant (k87a/h124a) 0.961 17 157
1jl2-assembly1.cif.gz_B crystal structure of tceo rnase h-a chimera combining the folding core from t. thermophilus rnase h and the remaining region of e. coli rnase h 0.9605 18 157
ID Description Score Start End Superfamily
1jl2C00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9616 18 157 3.30.420.10
af_A0A0R0EHL2_85_153_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9609 20 73 3.30.420.10
2zqbB00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.947 18 157 3.30.420.10
4dixB01 Mainly Beta;Sandwich;Immunoglobulin-like; 0.8951 35 51 2.60.40.2700
1jl2C00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8847 18 157 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A351A214-F1-model_v4 Ribonuclease HI (EC 3.1.26.4) 0.9919 18 74 GO:0003676
GO:0004523
AF-A0A0G9MSR0-F1-model_v4 Ribonuclease H (RNase H) (EC 3.1.26.4) 0.9891 18 159 GO:0000287
GO:0003676
GO:0004523
GO:0005737
GO:0043137
AF-A0A258X9Y1-F1-model_v4 Ribonuclease H (RNase H) (EC 3.1.26.4) 0.988 18 158 GO:0000287
GO:0003676
GO:0004523
GO:0005737
GO:0043137
AF-A0A259IBM5-F1-model_v4 Ribonuclease H (RNase H) (EC 3.1.26.4) 0.9876 18 158 GO:0000287
GO:0003676
GO:0004523
GO:0005737
GO:0043137
AF-A0A1T4VFU8-F1-model_v4 Ribonuclease H (RNase H) (EC 3.1.26.4) 0.9868 17 155 GO:0000287
GO:0003676
GO:0004523
GO:0005737
GO:0043137

Map