F283071

General Info

Members Datasets Scaffolds Average Seq Length
184 151 369 378

Family's Representative Sequence

Representative Sequence 3300046455|Ga0495603_0002578|Ga0495603_0002578_5106_6329
Length 407
Sequence LSAEPADRHPAQVRAIPNHPMSRRSLLRAFGAGAAGATLAGCGVPAAYVQPGDRAGRDFSATDHTLRFANWPLYIDTDDEDESKRPTLDTFTERTGISVGYTEEINDNDEFFGKISPALMNHQQTGRDLIVISDWMAARFVRLGWVQEMDRTEQPNVAKYLDPQLRSPGFDQGRLHSVPWQSGITGIAYNRKKLGREIKHTSDLWAADLRGKVTLLSGLDESFALLMQGNGVDVTRWTRDDFYTTCDQVEKLVKEKHIRRFTGNDYIKDLSTGDVLACQAYSGDVIQLQADNPEIEFVVPEEGAELWAESLMIPNLARHKRSAEKLIDYYYEPEVAAELATWVNYVCPVPAAREVLASAKDEETAALAEDPLIFPDDAMRRRLAIARDITSEERAEFAKKWNSVVGL

Samples

Sample ID Description Type Environment
1 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
6 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
7 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
8 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
9 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
10 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
11 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
12 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
13 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
14 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
15 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
16 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
20 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
21 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
22 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
23 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
24 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
25 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
26 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
27 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
28 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
29 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
30 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
31 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
32 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
33 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
34 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
35 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
36 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
37 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
38 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
39 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
40 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
41 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
42 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
43 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
44 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
45 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
46 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
47 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
48 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
49 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
50 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
51 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
52 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
53 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
54 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
55 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
56 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
57 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
58 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
59 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
60 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
61 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
62 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
63 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
64 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
65 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
66 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
67 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
68 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
69 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
70 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
71 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
72 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
73 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
74 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
75 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
76 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
77 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
78 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
79 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
80 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
81 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
88 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
89 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
90 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
91 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
92 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
93 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
94 3300053126 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 endosphere Metagenome Endosphere
95 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
96 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
97 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
98 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
99 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
100 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
101 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
102 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
103 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
104 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
105 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
106 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
107 2643221578 Streptomyces sp. Root63 Isolate Unclassified
108 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
109 2643221670 Streptomyces sp. Root431 Isolate Unclassified
110 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
111 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
112 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
113 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
114 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
115 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
116 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
117 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
118 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
119 2808606448 Streptomyces sp. 193411 Isolate Unclassified
120 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
121 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
122 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
123 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
124 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
125 2862574272 Streptomyces sp. AcE210 Isolate Nodule
126 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
127 2867428634 Streptomyces sp. RP5T Isolate Unclassified
128 2867475112 Streptomyces sp. TM32 Isolate Unclassified
129 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
130 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
131 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
132 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
133 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
134 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
135 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
136 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
137 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
138 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
139 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
140 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
141 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
142 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
143 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
144 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
145 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
146 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
147 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
148 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
149 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
150 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
151 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.37
Metatranscriptomes 0
Isolates 26.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.41
Nodule 1.63
Rhizoplane 1.09
Rhizosphere 65.76
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495603_0002578 3300046455 Bacteria 10688
2 JGI24737J22298_10012436 3300001990 Bacteria 2775
3 rootH1_10009929 3300003316 Bacteria 13279
4 rootH1_10006015 3300003316 Unclassified 2829
5 rootH1_10006015 3300003323 Bacteria 1869
6 Ga0068867_100033698 3300005459 Bacteria 3711
7 Ga0068866_10047615 3300005718 Bacteria 2163
8 Ga0075368_10043170 3300006042 Bacteria 1776
9 Ga0075363_100008824 3300006048 Bacteria 4715
10 Ga0075367_10094466 3300006178 Bacteria 1823
11 Ga0105251_10058991 3300009011 Bacteria 1811
12 Ga0105239_10392952 3300010375 Bacteria 1569
13 Ga0105246_10009689 3300011119 Bacteria 5938
14 Ga0183367_1013 3300015688 Bacteria 334176
15 Ga0209758_1017375 3300025297 Bacteria 3587
16 Ga0207426_1006181 3300025302 Bacteria 5268
17 Ga0207647_10089242 3300025904 Bacteria 1840
18 Ga0207661_10258870 3300025944 Bacteria 1549
19 Ga0207648_10041940 3300026089 Bacteria 4018
20 Ga0209813_10030436 3300027866 Bacteria 1586
21 Ga0307517_10012400 3300028786 Bacteria 11703
22 Ga0307517_10016993 3300028786 Bacteria 9516
23 Ga0307515_10003048 3300028794 Bacteria 35498
24 Ga0307515_10098639 3300028794 Bacteria 3556
25 Ga0307511_10001078 3300030521 Bacteria 29008
26 Ga0307511_10057988 3300030521 Bacteria 3000
27 Ga0307511_10084317 3300030521 Bacteria 2207
28 Ga0307513_10031695 3300031456 Bacteria 5981
29 Ga0307513_10187359 3300031456 Bacteria 1925
30 Ga0307508_10097413 3300031616 Bacteria 2533
31 Ga0307514_10120546 3300031649 Bacteria 1831
32 Ga0307516_10127725 3300031730 Bacteria 2325
33 Ga0307516_10164046 3300031730 Bacteria 1969
34 Ga0307507_10052097 3300033179 Bacteria 3930
35 Ga0307510_10075662 3300033180 Bacteria 3317
36 Ga0395898_0009407 3300037466 Bacteria 10263
37 Ga0395898_0010739 3300037466 Bacteria 9566
38 Ga0395898_0053586 3300037466 Bacteria 3940
39 Ga0439448_0003656 3300042005 Bacteria 4283
40 Ga0450903_000128 3300042138 Bacteria 16569
41 Ga0439458_0000615 3300042157 Bacteria 9204
42 Ga0450901_002554 3300042533 Bacteria 1951
43 Ga0466972_0008527 3300044658 Bacteria 5144
44 Ga0495627_028719 3300046453 Bacteria 1775
45 Ga0495603_0032174 3300046455 Bacteria 3156
46 Ga0495603_0042244 3300046455 Bacteria 2725
47 Ga0495629_0001664 3300046459 Bacteria 17437
48 Ga0495629_0008898 3300046459 Bacteria 7383
49 Ga0495629_0019534 3300046459 Bacteria 4839
50 Ga0495638_0107214 3300046460 Bacteria 1664
51 Ga0495650_0066992 3300046471 Bacteria 1420
52 Ga0495605_0006251 3300046474 Bacteria 6866
53 Ga0495605_0044975 3300046474 Bacteria 2179
54 Ga0495585_0083976 3300046492 Bacteria 1723
55 Ga0495585_0154178 3300046492 Bacteria 1196
56 Ga0495594_0001533 3300046499 Bacteria 12005
57 Ga0495594_0024690 3300046499 Bacteria 3230
58 Ga0495606_0006486 3300046507 Bacteria 10768
59 Ga0495616_0001766 3300046513 Bacteria 14722
60 Ga0495620_0005622 3300046515 Bacteria 6978
61 Ga0495620_0011814 3300046515 Bacteria 4539
62 Ga0495628_0050430 3300046516 Bacteria 3292
63 Ga0495631_0022107 3300046518 Bacteria 2958
64 Ga0495643_0001114 3300046522 Bacteria 26618
65 Ga0495643_0001191 3300046522 Bacteria 25336
66 Ga0495648_0035300 3300046524 Bacteria 3242
67 Ga0495666_0036478 3300046526 Bacteria 2394
68 Ga0495640_0009135 3300046533 Bacteria 7737
69 Ga0495586_0064392 3300046535 Bacteria 1998
70 Ga0495609_0006858 3300046538 Bacteria 5754
71 Ga0495597_0023909 3300046542 Bacteria 2824
72 Ga0495633_0009815 3300046558 Bacteria 5260
73 Ga0495633_0014023 3300046558 Bacteria 4202
74 Ga0495668_0010145 3300046616 Bacteria 5728
75 Ga0495611_0079126 3300046648 Bacteria 1510
76 Ga0495661_0147172 3300046665 Bacteria 1275
77 Ga0495588_0003226 3300046674 Bacteria 7068
78 Ga0495588_0003911 3300046674 Bacteria 6531
79 Ga0495657_0007873 3300046675 Bacteria 8177
80 Ga0495657_0055351 3300046675 Bacteria 2646
81 Ga0495646_0085393 3300046680 Bacteria 1832
82 Ga0495613_0013946 3300046689 Bacteria 5964
83 Ga0495613_0086801 3300046689 Bacteria 2268
84 Ga0495670_0078809 3300046691 Bacteria 1676
85 Ga0495670_0080467 3300046691 Bacteria 1659
86 Ga0495671_0002488 3300046692 Bacteria 11606
87 Ga0495671_0121502 3300046692 Bacteria 1274
88 Ga0495649_0017823 3300046694 Bacteria 4003
89 Ga0495649_0022350 3300046694 Bacteria 3539
90 Ga0495589_0003122 3300046794 Bacteria 9059
91 Ga0495589_0009540 3300046794 Bacteria 5043
92 Ga0495589_0013969 3300046794 Bacteria 4140
93 Ga0495660_0023197 3300046810 Bacteria 3541
94 Ga0495604_0024337 3300047317 Bacteria 4830
95 Ga0495636_0003041 3300047318 Bacteria 6497
96 Ga0495674_0130540 3300047319 Bacteria 2117
97 Ga0495676_0026885 3300047321 Bacteria 4943
98 Ga0495676_0129335 3300047321 Bacteria 1825
99 Ga0495683_0013627 3300047323 Bacteria 4248
100 Ga0495683_0070022 3300047323 Bacteria 1723
101 Ga0495687_002307 3300047443 Bacteria 15584
102 Ga0495675_0049124 3300047444 Bacteria 2682
103 Ga0495677_0040106 3300047445 Bacteria 1712
104 Ga0495685_007859 3300047447 Bacteria 3530
105 Ga0495685_013954 3300047447 Bacteria 2726
106 Ga0495685_021177 3300047447 Bacteria 2236
107 Ga0495685_028570 3300047447 Bacteria 1918
108 Ga0495681_0004772 3300047470 Bacteria 9183
109 Ga0495593_0009277 3300047673 Bacteria 5708
110 Ga0496109_0166814 3300048912 Bacteria 2065
111 Ga0496110_0154758 3300048913 Bacteria 2077
112 Ga0495678_067530 3300049459 Bacteria 1320
113 Ga0501034_0031032 3300049571 Bacteria 5431
114 Ga0501034_0092708 3300049571 Bacteria 3017
115 Ga0501036_0028650 3300049572 Bacteria 4706
116 Ga0501038_0004392 3300049574 Bacteria 13119
117 Ga0501038_0142190 3300049574 Bacteria 1962
118 Ga0501043_0079792 3300049579 Bacteria 2571
119 Ga0501048_0174325 3300049582 Bacteria 1524
120 Ga0501070_0207913 3300049586 Bacteria 1607
121 Ga0501035_0101152 3300049822 Bacteria 2529
122 nmdc:mga04h51_27146_c1 3300050495 Bacteria 1776
123 Ga0500578_0028654 3300053086 Bacteria 3576
124 Ga0500644_0053973 3300053088 Bacteria 1389
125 Ga0500646_0018491 3300053090 Bacteria 1836
126 Ga0500583_0049636 3300053092 Bacteria 1943
127 Ga0500566_0021026 3300053094 Bacteria 3838
128 Ga0500621_112350 3300053126 Bacteria 1063
129 Ga0500628_018130 3300053129 Bacteria 1383
130 Ga0500652_019135 3300053131 Bacteria 2538
131 Ga0500658_0010568 3300053134 Bacteria 3405
132 Ga0500561_0024595 3300053137 Bacteria 1455
133 Ga0500579_057913 3300053143 Bacteria 2321
134 Ga0500600_0095040 3300053149 Bacteria 1583
135 Ga0500616_0043149 3300053153 Bacteria 2411
136 Ga0500634_0004004 3300053161 Bacteria 6707
137 2547410597 2547132111 Bacteria 8013147
138 2585316778 2582581314 Bacteria 11452267
139 2616700060 2616644814 Bacteria 11555299
140 2616903750 2616644941 Bacteria 8510691
141 2643899351 2643221578 Bacteria 9213798
142 2643943690 2643221587 Bacteria 7586415
143 2644387168 2643221670 Bacteria 6497041
144 2644406914 2643221673 Bacteria 9196637
145 2644434051 2643221677 Bacteria 7584031
146 2644437751 2643221678 Bacteria 9540101
147 2784590655 2784132148 Bacteria 8627943
148 2785340927 2784746763 Bacteria 9783172
149 2785371828 2784746768 Bacteria 10036182
150 2786672939 2786546132 Bacteria 10419719
151 2804848192 2802429296 Bacteria 7227771
152 2808844328 2808606359 Bacteria 9866990
153 2809234347 2808606448 Bacteria 8656184
154 2812353444 2811994879 Bacteria 9313447
155 2852643061 2852635781 Bacteria 8251373
156 2862284319 2862281513 Bacteria 9621493
157 2862292910 2862290372 Bacteria 7471434
158 2862383460 2862382967 Bacteria 10317375
159 2862577204 2862574272 Bacteria 10567477
160 2863408920 2863404153 Bacteria 9672205
161 2867435805 2867428634 Bacteria 9590268
162 2867480292 2867475112 Bacteria 6909112
163 2873153797 2873151551 Bacteria 8625867
164 2875397008 2875391855 Bacteria 7600475
165 2877678751 2877676314 Bacteria 9512378
166 2912729895 2912723979 Bacteria 8557534
167 2918506798 2918501144 Bacteria 8668083
168 2919472515 2919468124 Bacteria 9133025
169 2935396005 2935390628 Bacteria 7043367
170 2946047548 2946045630 Bacteria 8527308
171 2954679246 2954673503 Bacteria 9685905
172 2954684907 2954682443 Bacteria 9862841
173 2990062438 2990059506 Bacteria 9321252
174 2997453131 2997451912 Bacteria 8492419
175 3006488022 3006486233 Bacteria 8157040
176 3006500012 3006493962 Bacteria 8825450
177 8008559095 8008558824 Bacteria 10610750
178 8008576878 8008574985 Bacteria 7815457
179 8023625693 8023623736 Bacteria 8593882
180 8025484218 8025478263 Bacteria 8209203
181 8048409808 8048406513 Bacteria 8936924
182 8054163132 8054160619 Bacteria 7783213
183 8056447837 8056447290 Bacteria 7680491
184 8056670768 8056667051 Bacteria 6953971
185 8056831603 8056829672 Bacteria 9045328
186 Ga0495603_0002578
187 JGI24737J22298_10012436
188 rootH1_10009929
189 rootH1_10006015
190 Ga0068867_100033698
191 Ga0068866_10047615
192 Ga0075368_10043170
193 Ga0075363_100008824
194 Ga0075367_10094466
195 Ga0105251_10058991
196 Ga0105239_10392952
197 Ga0105246_10009689
198 Ga0183367_1013
199 Ga0209758_1017375
200 Ga0207426_1006181
201 Ga0207647_10089242
202 Ga0207661_10258870
203 Ga0207648_10041940
204 Ga0209813_10030436
205 Ga0307517_10012400
206 Ga0307517_10016993
207 Ga0307515_10003048
208 Ga0307515_10098639
209 Ga0307511_10001078
210 Ga0307511_10057988
211 Ga0307511_10084317
212 Ga0307513_10031695
213 Ga0307513_10187359
214 Ga0307508_10097413
215 Ga0307514_10120546
216 Ga0307516_10127725
217 Ga0307516_10164046
218 Ga0307507_10052097
219 Ga0307510_10075662
220 Ga0395898_0009407
221 Ga0395898_0010739
222 Ga0395898_0053586
223 Ga0439448_0003656
224 Ga0450903_000128
225 Ga0439458_0000615
226 Ga0450901_002554
227 Ga0466972_0008527
228 Ga0495627_028719
229 Ga0495603_0032174
230 Ga0495603_0042244
231 Ga0495629_0001664
232 Ga0495629_0008898
233 Ga0495629_0019534
234 Ga0495638_0107214
235 Ga0495650_0066992
236 Ga0495605_0006251
237 Ga0495605_0044975
238 Ga0495585_0083976
239 Ga0495585_0154178
240 Ga0495594_0001533
241 Ga0495594_0024690
242 Ga0495606_0006486
243 Ga0495616_0001766
244 Ga0495620_0005622
245 Ga0495620_0011814
246 Ga0495628_0050430
247 Ga0495631_0022107
248 Ga0495643_0001114
249 Ga0495643_0001191
250 Ga0495648_0035300
251 Ga0495666_0036478
252 Ga0495640_0009135
253 Ga0495586_0064392
254 Ga0495609_0006858
255 Ga0495597_0023909
256 Ga0495633_0009815
257 Ga0495633_0014023
258 Ga0495668_0010145
259 Ga0495611_0079126
260 Ga0495661_0147172
261 Ga0495588_0003226
262 Ga0495588_0003911
263 Ga0495657_0007873
264 Ga0495657_0055351
265 Ga0495646_0085393
266 Ga0495613_0013946
267 Ga0495613_0086801
268 Ga0495670_0078809
269 Ga0495670_0080467
270 Ga0495671_0002488
271 Ga0495671_0121502
272 Ga0495649_0017823
273 Ga0495649_0022350
274 Ga0495589_0003122
275 Ga0495589_0009540
276 Ga0495589_0013969
277 Ga0495660_0023197
278 Ga0495604_0024337
279 Ga0495636_0003041
280 Ga0495674_0130540
281 Ga0495676_0026885
282 Ga0495676_0129335
283 Ga0495683_0013627
284 Ga0495683_0070022
285 Ga0495687_002307
286 Ga0495675_0049124
287 Ga0495677_0040106
288 Ga0495685_007859
289 Ga0495685_013954
290 Ga0495685_021177
291 Ga0495685_028570
292 Ga0495681_0004772
293 Ga0495593_0009277
294 Ga0496109_0166814
295 Ga0496110_0154758
296 Ga0495678_067530
297 Ga0501034_0031032
298 Ga0501034_0092708
299 Ga0501036_0028650
300 Ga0501038_0004392
301 Ga0501038_0142190
302 Ga0501043_0079792
303 Ga0501048_0174325
304 Ga0501070_0207913
305 Ga0501035_0101152
306 nmdc:mga04h51_27146_c1
307 Ga0500578_0028654
308 Ga0500644_0053973
309 Ga0500646_0018491
310 Ga0500583_0049636
311 Ga0500566_0021026
312 Ga0500621_112350
313 Ga0500628_018130
314 Ga0500652_019135
315 Ga0500658_0010568
316 Ga0500561_0024595
317 Ga0500579_057913
318 Ga0500600_0095040
319 Ga0500616_0043149
320 Ga0500634_0004004
321 2547410597
322 2585316778
323 2616700060
324 2616903750
325 2643899351
326 2643943690
327 2644387168
328 2644406914
329 2644434051
330 2644437751
331 2784590655
332 2785340927
333 2785371828
334 2786672939
335 2804848192
336 2808844328
337 2809234347
338 2812353444
339 2852643061
340 2862284319
341 2862292910
342 2862383460
343 2862577204
344 2863408920
345 2867435805
346 2867480292
347 2873153797
348 2875397008
349 2877678751
350 2912729895
351 2918506798
352 2919472515
353 2935396005
354 2946047548
355 2954679246
356 2954684907
357 2990062438
358 2997453131
359 3006488022
360 3006500012
361 8008559095
362 8008576878
363 8023625693
364 8025484218
365 8048409808
366 8054163132
367 8056447837
368 8056670768
369 8056831603

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13416

SBP_bac_8

Bacterial extracellular solute-binding protein

87

375

0.89

PF13343

SBP_bac_6

Bacterial extracellular solute-binding protein

125

377

0.81

PF01547

SBP_bac_1

Bacterial extracellular solute-binding protein

75

337

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
4eqb-assembly2.cif.gz_B 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes 0.8699 52 385
4eqb-assembly2.cif.gz_B 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes 0.8549 52 385
2v84-assembly1.cif.gz_A crystal structure of the tp0655 (tppotd) lipoprotein of treponema pallidum 0.8201 54 385
3ttk-assembly3.cif.gz_C crystal structure of apo-spud 0.8137 53 386
7oyt-assembly1.cif.gz_A e.coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88l in complex with spermidine 0.8099 52 388
ID Description Score Start End Superfamily
2v84A01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9225 54 320 3.40.190.10
4gl0A01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9134 52 166 3.40.190.10
3ttnB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.901 55 355 3.40.190.10
3ttnB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8957 55 355 3.40.190.10
1poy101 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8765 52 346 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A7K2ZPR5-F1-model_v4 Extracellular solute-binding protein 0.979 47 388 GO:0015846
GO:0019808
GO:0042597
AF-A0A6B1N4W6-F1-model_v4 deleted 0.9694 94 388
AF-A0A7K2ZPR5-F1-model_v4 Extracellular solute-binding protein 0.9541 47 388 GO:0015846
GO:0019808
GO:0042597
AF-A0A6G3D096-F1-model_v4 Extracellular solute-binding protein 0.9437 272 388
AF-A0A6B1N4W6-F1-model_v4 deleted 0.9411 94 388

Map