F278293

General Info

Members Datasets Scaffolds Average Seq Length
181 112 89 312

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2980182181|2980187282
Length 367
Sequence LSCNNCLFSNRMQFPIVKPTNSLASCLLQLLAIAYCMKKVKERLSDLANRSGMGRTIAGMPVPAKRLSKTGKAIWRHWGLYLMLLPPVVYVLVFKYVPMYGIQIAFRDFYPTDGIWGSDWIGIANFERFFSSFVFWRLIRNTLGISIYYLLATFPLPIVLAIGLSELRNRFFQKTAQLVTYAPHFISTVVMVGIIVQFLSPHGGIINNMIVALGGKPINFMGEPAYFKSLYVWSGVWQNVGYSAIIYIAALTGIDPQIHEAAVIDGASKWKRILHIDIPYILPTAVILLILSVGHMMNVGFEKTYLMQNTMNISSSEVISTYVYKVGLLQGDFSYSTAVGLFNSVVNLVLILAVNRAARRFGDTSLW

Samples

Sample ID Description Type Environment
1 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
2 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
3 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
4 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
5 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
6 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
7 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
8 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
9 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
10 2738541295 Bacillus sp. OK085 Isolate Unclassified
11 2738543010 Bacillus sp. YR335 Isolate Unclassified
12 2818991459 Paenibacillus sp. 597 Isolate Unclassified
13 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
14 2857472729 Cohnella sp. R-74144 Isolate Unclassified
15 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
16 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
17 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
18 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
19 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
20 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
21 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
22 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
23 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
24 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
25 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
26 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
27 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
28 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
29 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
30 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
31 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
32 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
33 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
34 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
35 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
36 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
37 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
38 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
39 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
40 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
41 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
42 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
43 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
44 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
45 3006826541 Bacillus haikouensis CrR16 Isolate Unclassified
46 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
47 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
48 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
49 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
50 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
51 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
52 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
53 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
54 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
55 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
56 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
57 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
58 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
59 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
60 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
65 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
75 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
77 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
78 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
82 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
83 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
84 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
85 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
86 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
87 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
88 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
89 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
90 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
93 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
94 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
95 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
96 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
97 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
98 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
104 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
105 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
106 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
107 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
108 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
109 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
110 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
111 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
112 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 48.62
Metatranscriptomes 1.1
Isolates 50.28

Biome Distribution

Category Percentage (%)
Aerial Root 1.1
Bulb 0
Endosphere 9.39
Nodule 3.31
Rhizoplane 0
Rhizosphere 52.49
Stem 0
Stem Tuber 0
Unclassified 33.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10055139 3300003320 Bacteria 5115
2 Ga0055538_1000239 3300003751 Bacteria 30028
3 Ga0055538_1000268 3300003751 Bacteria 27344
4 Ga0055538_1000567 3300003751 Bacteria 12733
5 Ga0055538_1000584 3300003751 Bacteria 12253
6 Ga0055541_1004850 3300003841 Bacteria 2403
7 Ga0068868_100108134 3300005338 Bacteria 2257
8 Ga0070668_100048204 3300005347 Bacteria 3277
9 Ga0070667_100073472 3300005367 Bacteria 2916
10 Ga0068861_100387085 3300005719 Bacteria 1237
11 Ga0068863_100073636 3300005841 Bacteria 3232
12 Ga0081455_10101798 3300005937 Bacteria 2305
13 Ga0079104_1003966 3300006946 Bacteria 6586
14 Ga0105251_10022826 3300009011 Bacteria 3240
15 Ga0105239_10481005 3300010375 Bacteria 1411
16 Ga0105246_10000374 3300011119 Bacteria 23908
17 Ga0171462_1005 3300013250 Bacteria 598379
18 Ga0157378_10458494 3300013297 Bacteria 1266
19 Ga0157375_10725856 3300013308 Bacteria 1146
20 Ga0163163_10272791 3300014325 Bacteria 1743
21 Ga0157379_10303146 3300014968 Bacteria 1456
22 Ga0209784_100046 3300025224 Bacteria 200009
23 Ga0209784_100283 3300025224 Bacteria 28568
24 Ga0209784_100561 3300025224 Bacteria 13003
25 Ga0209784_101152 3300025224 Bacteria 4213
26 Ga0209566_100022 3300025225 Bacteria 403259
27 Ga0209566_100097 3300025225 Bacteria 135294
28 Ga0209566_100147 3300025225 Bacteria 82642
29 Ga0209566_100377 3300025225 Bacteria 36595
30 Ga0209676_1023073 3300025292 Bacteria 2045
31 Ga0209025_1005258 3300025294 Bacteria 10656
32 Ga0207655_1012935 3300025728 Bacteria 4830
33 Ga0207668_10015473 3300025972 Bacteria 4740
34 Ga0207658_10424156 3300025986 Bacteria 1173
35 Ga0207703_10216007 3300026035 Bacteria 1712
36 Ga0207675_100172948 3300026118 Bacteria 2065
37 Ga0209281_1004916 3300027111 Bacteria 3851
38 Ga0268264_10013903 3300028381 Bacteria 6617
39 Ga0307405_10012174 3300031731 Bacteria 4542
40 Ga0307405_10054442 3300031731 Bacteria 2498
41 Ga0307413_10096533 3300031824 Bacteria 1941
42 Ga0307413_10297790 3300031824 Bacteria 1222
43 Ga0307410_10181000 3300031852 Bacteria 1596
44 Ga0307406_10025961 3300031901 Bacteria 3512
45 Ga0307409_100173541 3300031995 Bacteria 1900
46 Ga0307510_10154395 3300033180 Bacteria 1906
47 Ga0395899_0011820 3300037312 Bacteria 6683
48 Ga0395899_0083397 3300037312 Bacteria 2324
49 Ga0395899_0096326 3300037312 Bacteria 2140
50 Ga0395899_0432202 3300037312 Bacteria 865
51 Ga0400483_094858 3300039062 Bacteria 1291
52 Ga0439436_0009034 3300041404 Bacteria 3056
53 Ga0439433_0013235 3300041999 Bacteria 1810
54 Ga0439449_0003433 3300042007 Bacteria 6168
55 Ga0439449_0019031 3300042007 Bacteria 2575
56 Ga0439457_000343 3300042014 Bacteria 12966
57 Ga0439462_0002042 3300042015 Unclassified 4633
58 Ga0451577_0131079 3300042876 Bacteria 2249
59 Ga0466969_0004068 3300044656 Bacteria 7751
60 Ga0466969_0007042 3300044656 Bacteria 5979
61 Ga0466969_0028038 3300044656 Bacteria 2880
62 Ga0453684_0009657 3300044712 Bacteria 16809
63 Ga0453684_0022954 3300044712 Bacteria 9226
64 Ga0453684_0242828 3300044712 Bacteria 2072
65 Ga0466968_0012801 3300044735 Unclassified 3291
66 Ga0466970_0000286 3300044765 Bacteria 24768
67 Ga0466959_0003710 3300045049 Bacteria 10083
68 Ga0466959_0007861 3300045049 Bacteria 7503
69 Ga0466959_0068309 3300045049 Bacteria 2575
70 Ga0495660_0076015 3300046810 Bacteria 1770
71 Ga0495626_0004119 3300048091 Bacteria 9032
72 Ga0496116_0000766 3300048919 Bacteria 40850
73 Ga0496116_0000872 3300048919 Bacteria 37591
74 Ga0496116_0029799 3300048919 Bacteria 3928
75 Ga0496116_0057074 3300048919 Bacteria 2555
76 Ga0496121_0037218 3300048924 Bacteria 4325
77 Ga0496122_0022329 3300048925 Bacteria 5629
78 Ga0496122_0059226 3300048925 Bacteria 2828
79 Ga0496122_0181477 3300048925 Bacteria 1255
80 Ga0496123_0006448 3300048926 Bacteria 11361
81 Ga0496123_0160602 3300048926 Bacteria 1199
82 Ga0496125_0005096 3300048928 Bacteria 14788
83 Ga0496125_0021774 3300048928 Bacteria 5964
84 Ga0496125_0085923 3300048928 Bacteria 2382
85 Ga0496125_0167889 3300048928 Bacteria 1480
86 Ga0496126_0049485 3300048929 Bacteria 3837
87 Ga0501305_016709 3300049161 Bacteria 1049
88 Ga0501312_008877 3300049528 Bacteria 1314
89 nmdc:mga07m45_146176_c1 3300050496 Bacteria 1370

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048926 Ga0496123_0160602 Ga0496123_0160602_15_776 252
2 3300037312 Ga0395899_0432202 Ga0395899_0432202_43_849 267
3 3300033180 Ga0307510_10154395 Ga0307510_101543952 280
4 3300010375 Ga0105239_10481005 Ga0105239_104810051 282
5 3300048925 Ga0496122_0022329 Ga0496122_0022329_1961_2935 282
6 3300048928 Ga0496125_0021774 Ga0496125_0021774_4346_5320 282
7 3300048929 Ga0496126_0049485 Ga0496126_0049485_948_1922 282
8 3300048919 Ga0496116_0057074 Ga0496116_0057074_11_982 286
9 3300006946 Ga0079104_1003966 Ga0079104_10039664 287
10 3300027111 Ga0209281_1004916 Ga0209281_10049162 287
11 3300031731 Ga0307405_10012174 Ga0307405_100121743 288
12 3300031824 Ga0307413_10096533 Ga0307413_100965332 288
13 3300031995 Ga0307409_100173541 Ga0307409_1001735412 288
14 3300013297 Ga0157378_10458494 Ga0157378_104584941 290
15 3300013308 Ga0157375_10725856 Ga0157375_107258562 290
16 3300014325 Ga0163163_10272791 Ga0163163_102727912 290
17 iso_pu_bacteria 2907202186 2907202976 293
18 3300003841 Ga0055541_1004850 Ga0055541_10048501 294
19 3300025225 Ga0209566_100022 Ga0209566_100022315 294
20 3300044712 Ga0453684_0022954 Ga0453684_0022954_3094_4014 294
21 3300046810 Ga0495660_0076015 Ga0495660_0076015_220_1143 294
22 3300048919 Ga0496116_0029799 Ga0496116_0029799_2867_3790 294
23 iso_pu_bacteria 2548877040 2550904193 294
24 iso_pu_bacteria 2571042143 2571533027 294
25 iso_pu_bacteria 2576861424 2578336854 294
26 iso_pu_bacteria 2728368933 2728534529 294
27 iso_pu_bacteria 2738541295 2738816322 294
28 iso_pu_bacteria 2738543010 2739232201 294
29 iso_pu_bacteria 2857604169 2857605587 294
30 iso_pu_bacteria 2857609550 2857613466 294
31 iso_pu_bacteria 2881636855 2881637885 294
32 iso_pu_bacteria 2885526491 2885529649 294
33 iso_pu_bacteria 2889049205 2889053206 294
34 iso_pu_bacteria 2904162308 2904164919 294
35 iso_pu_bacteria 2907202186 2907204558 294
36 iso_pu_bacteria 2919425241 2919429492 294
37 iso_pu_bacteria 2938649242 2938649868 294
38 iso_pu_bacteria 2971511577 2971515484 294
39 iso_pu_bacteria 2980176882 2980179986 294
40 iso_pu_bacteria 2996632988 2996635714 294
41 iso_pu_bacteria 3006826541 3006829718 294
42 iso_pu_bacteria 3006984091 3006987454 294
43 iso_pu_bacteria 8054465665 8054469882 294
44 iso_pu_bacteria 8056533031 8056540756 294
45 3300003751 Ga0055538_1000268 Ga0055538_100026811 295
46 3300003751 Ga0055538_1000584 Ga0055538_10005842 295
47 3300009011 Ga0105251_10022826 Ga0105251_100228261 295
48 3300011119 Ga0105246_10000374 Ga0105246_1000037423 295
49 3300025224 Ga0209784_100561 Ga0209784_1005613 295
50 3300025224 Ga0209784_101152 Ga0209784_1011522 295
51 3300025225 Ga0209566_100097 Ga0209566_1000977 295
52 3300025728 Ga0207655_1012935 Ga0207655_10129352 295
53 3300037312 Ga0395899_0096326 Ga0395899_0096326_570_1487 295
54 3300039062 Ga0400483_094858 Ga0400483_094858_85_1026 295
55 3300042007 Ga0439449_0019031 Ga0439449_0019031_643_1569 295
56 3300044656 Ga0466969_0004068 Ga0466969_0004068_5430_6353 295
57 3300044735 Ga0466968_0012801 Ga0466968_0012801_1076_1999 295
58 3300045049 Ga0466959_0007861 Ga0466959_0007861_2262_3185 295
59 3300048919 Ga0496116_0000872 Ga0496116_0000872_30142_31047 295
60 3300048924 Ga0496121_0037218 Ga0496121_0037218_3266_4171 295
61 3300048925 Ga0496122_0059226 Ga0496122_0059226_40_957 295
62 3300048925 Ga0496122_0181477 Ga0496122_0181477_329_1234 295
63 3300048928 Ga0496125_0005096 Ga0496125_0005096_1119_2024 295
64 3300048928 Ga0496125_0167889 Ga0496125_0167889_71_976 295
65 iso_pu_bacteria 2512564039 2512730668 295
66 iso_pu_bacteria 2585428059 2587738308 295
67 iso_pu_bacteria 2593339198 2595317013 295
68 iso_pu_bacteria 2643221543 2643741232 295
69 iso_pu_bacteria 2643221676 2644421213 295
70 iso_pu_bacteria 2643221676 2644426009 295
71 iso_pu_bacteria 2818991459 2819673520 295
72 iso_pu_bacteria 2857453340 2857453444 295
73 iso_pu_bacteria 2857453340 2857455113 295
74 iso_pu_bacteria 2857453340 2857457769 295
75 iso_pu_bacteria 2857453340 2857458728 295
76 iso_pu_bacteria 2857453340 2857458733 295
77 iso_pu_bacteria 2857723135 2857724446 295
78 iso_pu_bacteria 2864733723 2864734426 295
79 iso_pu_bacteria 2885526491 2885529490 295
80 iso_pu_bacteria 2885526491 2885532807 295
81 iso_pu_bacteria 2888578766 2888579166 295
82 iso_pu_bacteria 2889042446 2889048544 295
83 iso_pu_bacteria 2889049205 2889051254 295
84 iso_pu_bacteria 2904162308 2904164764 295
85 iso_pu_bacteria 2904162308 2904167625 295
86 iso_pu_bacteria 2904490793 2904494798 295
87 iso_pu_bacteria 2904755435 2904757153 295
88 iso_pu_bacteria 2904755435 2904757485 295
89 iso_pu_bacteria 2907202186 2907202677 295
90 iso_pu_bacteria 2907202186 2907202896 295
91 iso_pu_bacteria 2919160200 2919164090 295
92 iso_pu_bacteria 2919425241 2919426890 295
93 iso_pu_bacteria 2919425241 2919427707 295
94 iso_pu_bacteria 2919425241 2919431469 295
95 iso_pu_bacteria 2931384279 2931385656 295
96 iso_pu_bacteria 2939679117 2939680193 295
97 iso_pu_bacteria 2945968032 2945970739 295
98 iso_pu_bacteria 2945991243 2945995731 295
99 iso_pu_bacteria 2946041624 2946041878 295
100 iso_pu_bacteria 2946041624 2946042937 295
101 iso_pu_bacteria 2946053406 2946058442 295
102 iso_pu_bacteria 2946080515 2946082204 295
103 iso_pu_bacteria 2946080515 2946083433 295
104 iso_pu_bacteria 2971410472 2971413692 295
105 iso_pu_bacteria 2971410472 2971413906 295
106 iso_pu_bacteria 2971410472 2971416143 295
107 iso_pu_bacteria 2971410472 2971417673 295
108 iso_pu_bacteria 2980182181 2980183191 295
109 iso_pu_bacteria 2980182181 2980190175 295
110 iso_pu_bacteria 2984527788 2984528164 295
111 iso_pu_bacteria 2984532647 2984534273 295
112 iso_pu_bacteria 8002317523 8002320117 295
113 iso_pu_bacteria 8045830549 8045833505 295
114 iso_pu_bacteria 8054795415 8054796539 295
115 iso_pu_bacteria 8054795415 8054796550 295
116 iso_pu_bacteria 8054795415 8054797051 295
117 iso_pu_bacteria 8054795415 8054797707 295
118 iso_pu_bacteria 8056054917 8056055582 295
119 iso_pu_bacteria 8056054917 8056055648 295
120 iso_pu_bacteria 8056533031 8056533760 295
121 iso_pu_bacteria 8056533031 8056536247 295
122 iso_pu_bacteria 8056533031 8056538919 295
123 iso_pu_bacteria 8056533031 8056538972 295
124 3300003751 Ga0055538_1000567 Ga0055538_100056710 297
125 3300005338 Ga0068868_100108134 Ga0068868_1001081341 297
126 3300005347 Ga0070668_100048204 Ga0070668_1000482042 297
127 3300005367 Ga0070667_100073472 Ga0070667_1000734723 297
128 3300005719 Ga0068861_100387085 Ga0068861_1003870852 297
129 3300005841 Ga0068863_100073636 Ga0068863_1000736363 297
130 3300014968 Ga0157379_10303146 Ga0157379_103031462 297
131 3300025224 Ga0209784_100046 Ga0209784_100046194 297
132 3300025972 Ga0207668_10015473 Ga0207668_100154733 297
133 3300025986 Ga0207658_10424156 Ga0207658_104241561 297
134 3300026035 Ga0207703_10216007 Ga0207703_102160072 297
135 3300026118 Ga0207675_100172948 Ga0207675_1001729482 297
136 3300028381 Ga0268264_10013903 Ga0268264_100139033 297
137 3300031731 Ga0307405_10054442 Ga0307405_100544422 297
138 3300048926 Ga0496123_0006448 Ga0496123_0006448_9230_10192 297
139 3300048928 Ga0496125_0085923 Ga0496125_0085923_1125_2069 297
140 3300049161 Ga0501305_016709 Ga0501305_016709_35_1003 297
141 3300049528 Ga0501312_008877 Ga0501312_008877_36_1004 297
142 iso_pu_bacteria 8002317523 8002321098 297
143 3300003320 rootH2_10055139 rootH2_100551392 298
144 3300003751 Ga0055538_1000239 Ga0055538_10002397 298
145 3300005937 Ga0081455_10101798 Ga0081455_101017982 298
146 3300013250 Ga0171462_1005 Ga0171462_100539 298
147 3300025224 Ga0209784_100283 Ga0209784_1002837 298
148 3300025225 Ga0209566_100022 Ga0209566_10002291 298
149 3300025225 Ga0209566_100147 Ga0209566_10014769 298
150 3300025225 Ga0209566_100377 Ga0209566_10037732 298
151 3300025292 Ga0209676_1023073 Ga0209676_10230732 298
152 3300025294 Ga0209025_1005258 Ga0209025_10052585 298
153 3300031824 Ga0307413_10297790 Ga0307413_102977901 298
154 3300031852 Ga0307410_10181000 Ga0307410_101810001 298
155 3300031901 Ga0307406_10025961 Ga0307406_100259612 298
156 3300037312 Ga0395899_0011820 Ga0395899_0011820_245_1270 298
157 3300037312 Ga0395899_0083397 Ga0395899_0083397_710_1657 298
158 3300041404 Ga0439436_0009034 Ga0439436_0009034_321_1274 298
159 3300041999 Ga0439433_0013235 Ga0439433_0013235_362_1315 298
160 3300042007 Ga0439449_0003433 Ga0439449_0003433_2179_3147 298
161 3300042014 Ga0439457_000343 Ga0439457_000343_10016_10969 298
162 3300042015 Ga0439462_0002042 Ga0439462_0002042_198_1166 298
163 3300042876 Ga0451577_0131079 Ga0451577_0131079_1223_2197 298
164 3300044656 Ga0466969_0007042 Ga0466969_0007042_1023_1997 298
165 3300044656 Ga0466969_0028038 Ga0466969_0028038_1510_2457 298
166 3300044712 Ga0453684_0009657 Ga0453684_0009657_15211_16143 298
167 3300044712 Ga0453684_0242828 Ga0453684_0242828_967_1941 298
168 3300044765 Ga0466970_0000286 Ga0466970_0000286_2732_3706 298
169 3300045049 Ga0466959_0003710 Ga0466959_0003710_4828_5802 298
170 3300045049 Ga0466959_0068309 Ga0466959_0068309_1152_2099 298
171 3300048091 Ga0495626_0004119 Ga0495626_0004119_4673_5650 298
172 3300048919 Ga0496116_0000766 Ga0496116_0000766_27607_28566 298
173 3300050496 nmdc:mga07m45_146176_c1 nmdc:mga07m45_146176_c1_181_1155 298
174 iso_pu_bacteria 2585428059 2587739730 298
175 iso_pu_bacteria 2593339198 2595321159 298
176 iso_pu_bacteria 2857472729 2857477792 298
177 iso_pu_bacteria 2904755435 2904757873 298
178 iso_pu_bacteria 2919425241 2919432363 298
179 iso_pu_bacteria 2980182181 2980187282 298
180 iso_pu_bacteria 2980182181 2980188386 298
181 iso_pu_bacteria 8054107350 8054108809 298

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

153

363

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9309 6 293
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.9287 6 297
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9274 6 293
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.9072 6 297
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9059 6 293
ID Description Score Start End Superfamily
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9571 51 293 1.10.3720.10
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9458 51 293 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8935 52 295 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8833 52 295 1.10.3720.10
af_P71896_49_286_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8781 52 291 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A850CFJ9-F1-model_v4 Sugar ABC transporter permease 0.993 32 298 GO:0005886
GO:0055085
AF-A0A850CFJ9-F1-model_v4 Sugar ABC transporter permease 0.9857 32 298 GO:0005886
GO:0055085
AF-A0A5C8NIU1-F1-model_v4 Sugar ABC transporter permease 0.9764 33 298 GO:0005886
GO:0055085
AF-A0A1R0ZWP6-F1-model_v4 Sugar ABC transporter permease 0.9757 17 298 GO:0005886
GO:0055085
AF-A0A1C5KMZ2-F1-model_v4 Inner membrane ABC transporter permease protein ycjO 0.9742 10 298 GO:0005886
GO:0055085

Feature Viewer

pLDDT pTM Quality
86.26 0.78 High
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Predicted Structure (AlphaFold2)

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