F276492

General Info

Members Datasets Scaffolds Average Seq Length
180 118 126 367

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2887443736|2887447116
Length 430
Sequence LDAAATTPMRREALEAMWPYLTGEFGNPSSHHGVGERAAAGLSGARRSVAAVLGGRASEVTFTSGGTEGANLAIKGLALANPRGRHLVTAAIEHEAVLESVDYLRRVHGFEVSMVPVTREGVVTPDSLRAVLREDTTLVSVALANNEIGTVQDIAALSAVAHDAGALMHTDAVQAAGWLSLDVRALGVDALSLSGHKVGAGKGIGVVFLRGRLAVEPVLHGGGQERDRRSGTENVAGAVAMGVALALAESGREERVAQVGAAMAAFTADVLTQVPTARLTGPSHVRDDAGPAAAPHIPADQAAARPDAQADETTPPPHSQAEATSARVGGSAVGRVGRLPNHASFCFPGVSGEAVLLELERRGVISSSGSACAAGSDEPSHVLLACGIEPEVAQTSVRFTAGGEVSGDQLAAITHQAAPLVAEAVAAVSG

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221546 Microbacterium sp. Root53 Isolate Unclassified
4 2643221549 Agromyces sp. Root1464 Isolate Unclassified
5 2643221553 Microbacterium sp. Root553 Isolate Unclassified
6 2643221566 Microbacterium sp. Root166 Isolate Unclassified
7 2643221572 Leifsonia sp. Root60 Isolate Unclassified
8 2643221619 Agromyces sp. Root81 Isolate Unclassified
9 2643221630 Microbacterium sp. Root322 Isolate Unclassified
10 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
11 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
12 2687453129 Halotalea alkalilenta IHB B 13600 Isolate Unclassified
13 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
14 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
15 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
16 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
17 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
18 2773857759 Microbacterium sp. 1294 Isolate Unclassified
19 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
20 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
21 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
22 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
23 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
24 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
25 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
26 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
27 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
28 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
29 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
30 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
31 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
32 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
33 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
34 2919069694 Microbacterium sp. 1154 Isolate Unclassified
35 2919395869 Microbacterium resistens 2980 Isolate Unclassified
36 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
37 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
38 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
39 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
40 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
41 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
42 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
43 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
44 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
45 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
46 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
47 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
48 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
49 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
50 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
51 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
52 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
53 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
54 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
55 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
56 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
57 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
58 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
61 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
66 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
77 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
78 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
79 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
82 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
83 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
84 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
87 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
88 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
89 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
90 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
91 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
92 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
108 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
109 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
110 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
114 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
115 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
116 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
117 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
118 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 68.89
Metatranscriptomes 1.11
Isolates 30

Biome Distribution

Category Percentage (%)
Aerial Root 1.11
Bulb 0
Endosphere 6.11
Nodule 0
Rhizoplane 2.22
Rhizosphere 60
Stem 0
Stem Tuber 0
Unclassified 30.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001483 3300002738 Bacteria 8265
2 Ga0055527_1000001 3300003760 Bacteria 850044
3 Ga0055529_1000019 3300003763 Bacteria 332786
4 Ga0070658_10078401 3300005327 Bacteria 2711
5 Ga0068853_100421054 3300005539 Bacteria 1252
6 Ga0068860_100008799 3300005843 Bacteria 10060
7 Ga0075364_10008865 3300006051 Bacteria 6022
8 Ga0075364_10029399 3300006051 Bacteria 3524
9 Ga0157369_10088370 3300013105 Bacteria 3307
10 Ga0157369_10092209 3300013105 Bacteria 3233
11 Ga0171462_1004 3300013250 Bacteria 678877
12 Ga0206354_10230810 3300020081 Bacteria 5414
13 Ga0206353_10297649 3300020082 Bacteria 3213
14 Ga0209672_100006 3300025228 Bacteria 1004497
15 Ga0209147_103723 3300025229 Bacteria 2821
16 Ga0209646_1000092 3300025246 Bacteria 185930
17 Ga0209677_101020 3300025253 Bacteria 13368
18 Ga0209148_1000015 3300025254 Bacteria 850103
19 Ga0209455_1000013 3300025272 Bacteria 850103
20 Ga0207655_1005623 3300025728 Bacteria 8486
21 Ga0207647_10035834 3300025904 Bacteria 3158
22 Ga0207709_10004019 3300025935 Bacteria 8569
23 Ga0207709_10144499 3300025935 Bacteria 1639
24 Ga0268264_10013831 3300028381 Bacteria 6638
25 Ga0307413_10217180 3300031824 Bacteria 1394
26 Ga0307406_10000134 3300031901 Bacteria 44054
27 Ga0307406_10004588 3300031901 Bacteria 7520
28 Ga0307406_10027775 3300031901 Bacteria 3413
29 Ga0307416_100212804 3300032002 Bacteria 1846
30 Ga0395901_0028210 3300038443 Bacteria 5775
31 Ga0466969_0020793 3300044656 Bacteria 3396
32 Ga0466972_0124066 3300044658 Bacteria 1217
33 Ga0466961_0038488 3300044693 Bacteria 3068
34 Ga0466963_0017279 3300044694 Bacteria 4495
35 Ga0466960_0167626 3300044901 Bacteria 1183
36 Ga0466967_0007460 3300045976 Bacteria 7891
37 Ga0496105_0046730 3300048908 Bacteria 3573
38 Ga0496105_0163992 3300048908 Bacteria 1824
39 Ga0496111_0219034 3300048914 Bacteria 1414
40 Ga0496115_0045870 3300048918 Bacteria 3490
41 Ga0496117_0000063 3300048920 Bacteria 254446
42 Ga0496117_0001139 3300048920 Bacteria 40044
43 Ga0496118_0025621 3300048921 Bacteria 5049
44 Ga0496120_0002055 3300048923 Bacteria 21739
45 Ga0496120_0017564 3300048923 Bacteria 4630
46 Ga0496122_0000036 3300048925 Bacteria 312598
47 Ga0496122_0011292 3300048925 Bacteria 9069
48 Ga0496123_0000011 3300048926 Bacteria 493925
49 Ga0496123_0005485 3300048926 Bacteria 12755
50 Ga0496124_0001451 3300048927 Bacteria 34959
51 Ga0496124_0079646 3300048927 Bacteria 2697
52 Ga0496124_0141470 3300048927 Bacteria 1898
53 Ga0496125_0004725 3300048928 Bacteria 15520
54 Ga0496125_0011598 3300048928 Bacteria 8803
55 Ga0496125_0075346 3300048928 Bacteria 2612
56 Ga0496126_0002482 3300048929 Bacteria 24819
57 Ga0496126_0019208 3300048929 Bacteria 6735
58 Ga0496126_0026254 3300048929 Bacteria 5587
59 Ga0496126_0033669 3300048929 Bacteria 4818
60 Ga0496126_0063342 3300048929 Bacteria 3315
61 Ga0496126_0309477 3300048929 Bacteria 1301
62 Ga0501031_0005313 3300049568 Bacteria 8388
63 Ga0501031_0014455 3300049568 Bacteria 5130
64 Ga0501032_0003977 3300049569 Bacteria 11209
65 Ga0501032_0006540 3300049569 Bacteria 8558
66 Ga0501032_0075767 3300049569 Bacteria 2240
67 Ga0501033_0008438 3300049570 Bacteria 7978
68 Ga0501033_0010823 3300049570 Bacteria 6995
69 Ga0501033_0054042 3300049570 Bacteria 2972
70 Ga0501034_0001053 3300049571 Bacteria 39170
71 Ga0501034_0002709 3300049571 Bacteria 20874
72 Ga0501034_0007406 3300049571 Bacteria 11684
73 Ga0501034_0014021 3300049571 Bacteria 8253
74 Ga0501034_0018321 3300049571 Bacteria 7183
75 Ga0501034_0029943 3300049571 Bacteria 5533
76 Ga0501036_0001002 3300049572 Bacteria 21360
77 Ga0501036_0087973 3300049572 Bacteria 2625
78 Ga0501036_0096057 3300049572 Bacteria 2505
79 Ga0501037_0001216 3300049573 Bacteria 19066
80 Ga0501037_0040200 3300049573 Bacteria 3441
81 Ga0501037_0052307 3300049573 Bacteria 2987
82 Ga0501038_0000560 3300049574 Bacteria 32917
83 Ga0501038_0287632 3300049574 Bacteria 1292
84 Ga0501039_0013558 3300049575 Bacteria 6234
85 Ga0501039_0042881 3300049575 Bacteria 3495
86 Ga0501039_0044626 3300049575 Bacteria 3425
87 Ga0501042_0040193 3300049578 Bacteria 3325
88 Ga0501042_0232722 3300049578 Bacteria 1329
89 Ga0501043_0006752 3300049579 Bacteria 9163
90 Ga0501043_0006783 3300049579 Bacteria 9141
91 Ga0501043_0014032 3300049579 Bacteria 6270
92 Ga0501043_0057045 3300049579 Bacteria 3067
93 Ga0501046_0000916 3300049580 Bacteria 28889
94 Ga0501046_0035415 3300049580 Bacteria 4023
95 Ga0501046_0048320 3300049580 Bacteria 3370
96 Ga0501046_0065410 3300049580 Bacteria 2836
97 Ga0501047_0008208 3300049581 Bacteria 9860
98 Ga0501047_0035111 3300049581 Bacteria 4843
99 Ga0501047_0053636 3300049581 Bacteria 3899
100 Ga0501047_0093524 3300049581 Bacteria 2885
101 Ga0501048_0004529 3300049582 Bacteria 10579
102 Ga0501048_0010720 3300049582 Bacteria 6835
103 Ga0501068_0012897 3300049584 Bacteria 4748
104 Ga0501070_0010543 3300049586 Bacteria 7813
105 Ga0501070_0053207 3300049586 Bacteria 3359
106 Ga0501070_0069464 3300049586 Bacteria 2916
107 Ga0501073_0037733 3300049589 Bacteria 3429
108 Ga0501073_0062473 3300049589 Bacteria 2598
109 Ga0501073_0116311 3300049589 Bacteria 1853
110 Ga0501073_0200965 3300049589 Bacteria 1378
111 Ga0501080_0129474 3300049742 Bacteria 2336
112 Ga0501080_0482227 3300049742 Bacteria 1109
113 Ga0501083_0000011 3300049744 Bacteria 181041
114 Ga0501035_0009995 3300049822 Bacteria 8807
115 Ga0501035_0017370 3300049822 Bacteria 6633
116 Ga0501035_0017794 3300049822 Bacteria 6555
117 Ga0501035_0026908 3300049822 Bacteria 5258
118 Ga0501035_0173673 3300049822 Bacteria 1860
119 Ga0501035_0206931 3300049822 Bacteria 1680
120 Ga0501044_0002815 3300049823 Bacteria 19825
121 Ga0501044_0004183 3300049823 Bacteria 16222
122 Ga0501044_0036639 3300049823 Bacteria 5130
123 Ga0501044_0194764 3300049823 Bacteria 1987
124 Ga0501044_0269311 3300049823 Bacteria 1639
125 nmdc:mga00v17_7070_c1 3300050491 Bacteria 5975
126 nmdc:mga0sz30_33319_c1 3300050516 Bacteria 2140

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050516 nmdc:mga0sz30_33319_c1 nmdc:mga0sz30_33319_c1_22_1008 287
2 3300049589 Ga0501073_0200965 Ga0501073_0200965_382_1335 289
3 3300049742 Ga0501080_0482227 Ga0501080_0482227_13_966 289
4 3300049571 Ga0501034_0007406 Ga0501034_0007406_2980_4137 312
5 3300049579 Ga0501043_0057045 Ga0501043_0057045_127_1284 312
6 3300049581 Ga0501047_0035111 Ga0501047_0035111_2077_3234 312
7 3300049822 Ga0501035_0017794 Ga0501035_0017794_1604_2761 312
8 3300049823 Ga0501044_0004183 Ga0501044_0004183_5208_6365 312
9 3300005327 Ga0070658_10078401 Ga0070658_100784012 329
10 3300020081 Ga0206354_10230810 Ga0206354_102308104 329
11 3300020082 Ga0206353_10297649 Ga0206353_102976492 329
12 3300025253 Ga0209677_101020 Ga0209677_1010208 329
13 3300049571 Ga0501034_0014021 Ga0501034_0014021_5913_7094 332
14 3300049572 Ga0501036_0096057 Ga0501036_0096057_999_2180 332
15 3300049575 Ga0501039_0044626 Ga0501039_0044626_1629_2810 332
16 3300049579 Ga0501043_0006783 Ga0501043_0006783_4365_5546 332
17 3300049586 Ga0501070_0053207 Ga0501070_0053207_1885_3066 332
18 3300049589 Ga0501073_0116311 Ga0501073_0116311_28_1209 332
19 3300005539 Ga0068853_100421054 Ga0068853_1004210541 334
20 3300049822 Ga0501035_0017370 Ga0501035_0017370_872_2053 336
21 3300048929 Ga0496126_0026254 Ga0496126_0026254_2384_3526 337
22 3300049569 Ga0501032_0075767 Ga0501032_0075767_176_1339 337
23 3300049570 Ga0501033_0054042 Ga0501033_0054042_1505_2686 337
24 3300049571 Ga0501034_0029943 Ga0501034_0029943_311_1474 337
25 3300049573 Ga0501037_0052307 Ga0501037_0052307_1512_2675 337
26 3300049574 Ga0501038_0287632 Ga0501038_0287632_45_1208 337
27 3300049580 Ga0501046_0048320 Ga0501046_0048320_2145_3308 337
28 3300049581 Ga0501047_0093524 Ga0501047_0093524_1400_2563 337
29 3300049589 Ga0501073_0037733 Ga0501073_0037733_727_1890 337
30 3300049742 Ga0501080_0129474 Ga0501080_0129474_987_2150 337
31 3300049823 Ga0501044_0194764 Ga0501044_0194764_514_1677 337
32 3300006051 Ga0075364_10008865 Ga0075364_100088652 338
33 3300048927 Ga0496124_0079646 Ga0496124_0079646_966_2015 338
34 3300031901 Ga0307406_10027775 Ga0307406_100277752 339
35 3300044658 Ga0466972_0124066 Ga0466972_0124066_31_1116 339
36 3300049822 Ga0501035_0206931 Ga0501035_0206931_345_1508 339
37 3300049823 Ga0501044_0269311 Ga0501044_0269311_288_1451 339
38 3300048929 Ga0496126_0002482 Ga0496126_0002482_9214_10392 340
39 3300048908 Ga0496105_0163992 Ga0496105_0163992_131_1270 342
40 3300048914 Ga0496111_0219034 Ga0496111_0219034_39_1184 342
41 3300048920 Ga0496117_0000063 Ga0496117_0000063_216755_217894 342
42 3300048921 Ga0496118_0025621 Ga0496118_0025621_3257_4402 342
43 3300048923 Ga0496120_0002055 Ga0496120_0002055_11781_12920 342
44 3300048923 Ga0496120_0017564 Ga0496120_0017564_167_1312 342
45 3300048925 Ga0496122_0000036 Ga0496122_0000036_116462_117607 342
46 3300048925 Ga0496122_0011292 Ga0496122_0011292_1067_2206 342
47 3300048926 Ga0496123_0000011 Ga0496123_0000011_116538_117683 342
48 3300048926 Ga0496123_0005485 Ga0496123_0005485_4867_6006 342
49 3300048927 Ga0496124_0001451 Ga0496124_0001451_29831_30970 342
50 3300048928 Ga0496125_0004725 Ga0496125_0004725_13625_14764 342
51 3300048929 Ga0496126_0019208 Ga0496126_0019208_2522_3667 342
52 3300048929 Ga0496126_0033669 Ga0496126_0033669_2496_3635 342
53 3300013105 Ga0157369_10092209 Ga0157369_100922092 343
54 3300048928 Ga0496125_0075346 Ga0496125_0075346_1014_2150 343
55 3300003760 Ga0055527_1000001 Ga0055527_1000001708 344
56 3300003763 Ga0055529_1000019 Ga0055529_1000019214 344
57 3300025228 Ga0209672_100006 Ga0209672_100006267 344
58 3300025229 Ga0209147_103723 Ga0209147_1037233 344
59 3300025254 Ga0209148_1000015 Ga0209148_1000015111 344
60 3300025272 Ga0209455_1000013 Ga0209455_1000013111 344
61 3300049580 Ga0501046_0035415 Ga0501046_0035415_2529_3692 344
62 3300049578 Ga0501042_0040193 Ga0501042_0040193_1902_3104 345
63 3300025904 Ga0207647_10035834 Ga0207647_100358343 347
64 3300048918 Ga0496115_0045870 Ga0496115_0045870_729_1877 347
65 3300006051 Ga0075364_10029399 Ga0075364_100293994 348
66 3300025935 Ga0207709_10144499 Ga0207709_101444992 348
67 3300050491 nmdc:mga00v17_7070_c1 nmdc:mga00v17_7070_c1_1550_2686 348
68 3300031901 Ga0307406_10004588 Ga0307406_100045884 350
69 3300049568 Ga0501031_0005313 Ga0501031_0005313_2788_3990 351
70 3300049569 Ga0501032_0006540 Ga0501032_0006540_261_1463 351
71 3300049570 Ga0501033_0010823 Ga0501033_0010823_1394_2596 351
72 3300049571 Ga0501034_0018321 Ga0501034_0018321_5577_6779 351
73 3300049572 Ga0501036_0087973 Ga0501036_0087973_149_1351 351
74 3300049573 Ga0501037_0040200 Ga0501037_0040200_1513_2715 351
75 3300049575 Ga0501039_0042881 Ga0501039_0042881_1463_2665 351
76 3300049579 Ga0501043_0014032 Ga0501043_0014032_4475_5677 351
77 3300049580 Ga0501046_0065410 Ga0501046_0065410_1099_2301 351
78 3300049581 Ga0501047_0008208 Ga0501047_0008208_8336_9538 351
79 3300049582 Ga0501048_0004529 Ga0501048_0004529_4019_5221 351
80 3300049586 Ga0501070_0069464 Ga0501070_0069464_285_1487 351
81 3300049589 Ga0501073_0062473 Ga0501073_0062473_1093_2295 351
82 3300049822 Ga0501035_0026908 Ga0501035_0026908_3598_4800 351
83 3300049823 Ga0501044_0036639 Ga0501044_0036639_3606_4808 351
84 3300049568 Ga0501031_0014455 Ga0501031_0014455_2059_3201 352
85 3300049569 Ga0501032_0003977 Ga0501032_0003977_2239_3381 352
86 3300049570 Ga0501033_0008438 Ga0501033_0008438_2442_3584 352
87 3300049571 Ga0501034_0002709 Ga0501034_0002709_16369_17511 352
88 3300049572 Ga0501036_0001002 Ga0501036_0001002_18694_19836 352
89 3300049573 Ga0501037_0001216 Ga0501037_0001216_13055_14197 352
90 3300049574 Ga0501038_0000560 Ga0501038_0000560_18722_19864 352
91 3300049575 Ga0501039_0013558 Ga0501039_0013558_1370_2512 352
92 3300049578 Ga0501042_0232722 Ga0501042_0232722_73_1215 352
93 3300049579 Ga0501043_0006752 Ga0501043_0006752_4395_5537 352
94 3300049580 Ga0501046_0000916 Ga0501046_0000916_21064_22206 352
95 3300049581 Ga0501047_0053636 Ga0501047_0053636_519_1661 352
96 3300049582 Ga0501048_0010720 Ga0501048_0010720_4271_5413 352
97 3300049584 Ga0501068_0012897 Ga0501068_0012897_1481_2623 352
98 3300049586 Ga0501070_0010543 Ga0501070_0010543_2620_3762 352
99 3300049822 Ga0501035_0009995 Ga0501035_0009995_4771_5913 352
100 3300049822 Ga0501035_0173673 Ga0501035_0173673_645_1808 352
101 3300049823 Ga0501044_0002815 Ga0501044_0002815_2443_3585 352
102 3300048920 Ga0496117_0001139 Ga0496117_0001139_37613_38758 354
103 3300049744 Ga0501083_0000011 Ga0501083_0000011_144999_146150 354
104 3300044901 Ga0466960_0167626 Ga0466960_0167626_75_1169 355
105 3300044694 Ga0466963_0017279 Ga0466963_0017279_87_1262 357
106 3300045976 Ga0466967_0007460 Ga0466967_0007460_6585_7760 357
107 3300005843 Ga0068860_100008799 Ga0068860_1000087996 358
108 3300028381 Ga0268264_10013831 Ga0268264_100138314 358
109 3300031901 Ga0307406_10000134 Ga0307406_1000013431 359
110 iso_pu_bacteria 2757320536 2758226525 361
111 iso_pu_bacteria 2773857758 2774379990 361
112 iso_pu_bacteria 2808606306 2808630793 361
113 iso_pu_bacteria 2857720070 2857721987 361
114 iso_pu_bacteria 2904509784 2904511598 361
115 iso_pu_bacteria 2908678064 2908680530 361
116 iso_pu_bacteria 2919069694 2919071914 361
117 iso_pu_bacteria 2928090899 2928091753 361
118 iso_pu_bacteria 2974294766 2974297576 361
119 iso_pu_bacteria 2974324384 2974326188 361
120 iso_pu_bacteria 2977228692 2977231812 361
121 iso_pu_bacteria 2977236895 2977237170 361
122 iso_pu_bacteria 2977264416 2977267121 361
123 iso_pu_bacteria 2984542743 2984545041 361
124 iso_pu_bacteria 2984580707 2984581488 361
125 iso_pu_bacteria 8016254467 8016257158 361
126 3300025728 Ga0207655_1005623 Ga0207655_10056234 362
127 3300025935 Ga0207709_10004019 Ga0207709_100040193 362
128 iso_pu_bacteria 2643221549 2643769710 362
129 iso_pu_bacteria 2643221572 2643875840 362
130 iso_pu_bacteria 2643221619 2644114364 362
131 iso_pu_bacteria 2643221669 2644382895 362
132 iso_pu_bacteria 2721755702 2723641527 362
133 iso_pu_bacteria 2844841374 2844842889 362
134 iso_pu_bacteria 2848551377 2848554589 362
135 iso_pu_bacteria 2852677369 2852678071 362
136 iso_pu_bacteria 2895660088 2895663647 362
137 iso_pu_bacteria 2919443155 2919446825 362
138 iso_pu_bacteria 2939660829 2939662236 362
139 iso_pu_bacteria 2946041624 2946043504 362
140 iso_pu_bacteria 2643221566 2643849279 363
141 iso_pu_bacteria 2773857759 2774384103 363
142 iso_pu_bacteria 2808606368 2808885999 363
143 iso_pu_bacteria 2857729791 2857730346 363
144 iso_pu_bacteria 2887443736 2887447116 363
145 iso_pu_bacteria 2928121344 2928123561 363
146 iso_pu_bacteria 2977251589 2977254386 363
147 iso_pu_bacteria 2643221724 2644679484 364
148 iso_pu_bacteria 2728369380 2730228992 364
149 iso_pu_bacteria 2585428157 2588108764 365
150 iso_pu_bacteria 2643221542 2643732082 365
151 iso_pu_bacteria 2643221546 2643752865 365
152 iso_pu_bacteria 2643221553 2643785157 365
153 iso_pu_bacteria 2643221630 2644170897 365
154 iso_pu_bacteria 2747842429 2747953139 365
155 iso_pu_bacteria 2821268502 2821270416 365
156 iso_pu_bacteria 2852646457 2852646736 365
157 iso_pu_bacteria 2852663356 2852664565 365
158 iso_pu_bacteria 2857723135 2857723187 365
159 iso_pu_bacteria 2945968032 2945971167 365
160 iso_pu_bacteria 2946033335 2946034409 365
161 iso_pu_bacteria 2946080515 2946081570 365
162 iso_pu_bacteria 8004182704 8004183822 365
163 iso_pu_bacteria 8045830549 8045831416 365
164 3300048908 Ga0496105_0046730 Ga0496105_0046730_1029_2165 366
165 3300048929 Ga0496126_0063342 Ga0496126_0063342_1111_2241 366
166 3300049571 Ga0501034_0001053 Ga0501034_0001053_6077_7207 366
167 3300013105 Ga0157369_10088370 Ga0157369_100883702 367
168 3300013250 Ga0171462_1004 Ga0171462_100431 367
169 3300031824 Ga0307413_10217180 Ga0307413_102171801 367
170 3300032002 Ga0307416_100212804 Ga0307416_1002128042 367
171 3300038443 Ga0395901_0028210 Ga0395901_0028210_2965_4152 367
172 3300044656 Ga0466969_0020793 Ga0466969_0020793_1407_2582 367
173 3300044693 Ga0466961_0038488 Ga0466961_0038488_561_1736 367
174 iso_pu_bacteria 2687453129 2687581181 367
175 3300002738 JGI25154J39366_1001483 JGI25154J39366_10014835 369
176 3300025246 Ga0209646_1000092 Ga0209646_100009279 369
177 3300048927 Ga0496124_0141470 Ga0496124_0141470_495_1631 369
178 3300048928 Ga0496125_0011598 Ga0496125_0011598_4801_5937 369
179 3300048929 Ga0496126_0309477 Ga0496126_0309477_119_1255 369
180 iso_pu_bacteria 2919395869 2919396023 369

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00266

Aminotran_5

Aminotransferase class-V

1

302

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4isy-assembly1.cif.gz_C crystal structure of iscs from mycobacterium tuberculosis 0.93 1 368
4isy-assembly2.cif.gz_B crystal structure of iscs from mycobacterium tuberculosis 0.9299 3 368
4isy-assembly1.cif.gz_C crystal structure of iscs from mycobacterium tuberculosis 0.9251 1 368
7rtk-assembly1.cif.gz_A structure of the (niau)2 complex with n-terminal mutation of iscu2 y35d at 2.5 a resolution 0.9248 2 368
4eb7-assembly1.cif.gz_B a. fulgidus iscs-iscu complex structure 0.9219 3 368
ID Description Score Start End Superfamily
af_Q2FXV4_2_370_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9366 1 360 3.40.640.10
4isyB02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9346 13 242 3.40.640.10
4r5fA01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9345 250 362 3.90.1150.10
2hdyA02 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain); 0.9265 13 58 1.10.260.50
3lvjA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9223 13 245 3.40.640.10
ID Description Score Start End GO Terms
AF-A0A0X3PN44-F1-model_v4 Aminotransferase class V domain-containing protein 0.9758 1 186 GO:0005634
GO:0005739
GO:0005829
GO:0016226
GO:0031071
AF-A0A2N2CGK8-F1-model_v4 Cysteine desulfurase NifS 0.9707 1 174 GO:0016226
GO:0031071
AF-A0A259DL78-F1-model_v4 IscS subfamily cysteine desulfurase 0.9696 1 186 GO:0016226
GO:0031071
AF-A0A3M1YYK2-F1-model_v4 Aminotransferase class V-fold PLP-dependent enzyme 0.9695 1 180 GO:0008483
GO:0016226
GO:0031071
AF-A0A086PVJ6-F1-model_v4 Aminotransferase, class V superfamily protein (EC 2.8.1.7) 0.9685 1 187 GO:0008483
GO:0016226
GO:0031071

Feature Viewer

pLDDT pTM Quality
91.11 0.89 High
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Predicted Structure (AlphaFold2)

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