F275572

General Info

Members Datasets Scaffolds Average Seq Length
180 145 360 138

Family's Representative Sequence

Representative Sequence 3300010375|Ga0105239_10487701|Ga0105239_104877012
Length 156
Sequence LEPSNTHDPARDQCRAISDVLARVGDKWTVMVVGLLSDGPMRFNELRRTIGGISQRMLTLTLRGLERDGLVTRTVFPTIPPRVEYALTDRGQTLIEPLKALFAWATEHNGAIERSRQAFDAAMPGAEVPHPPRKVPALVRPRPAMSDFGAAGRTGR

Samples

Sample ID Description Type Environment
1 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
18 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
19 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
24 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
36 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
52 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
53 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
54 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
55 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
56 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
57 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
61 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
62 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
66 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
67 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
68 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
69 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
70 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
71 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
72 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
73 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
74 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
75 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
76 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
79 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
80 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
81 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
82 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
83 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
84 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
85 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
88 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
89 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
90 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
91 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
94 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
95 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
96 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
97 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
98 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
99 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
100 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
101 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
102 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
103 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
104 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
105 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
106 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
107 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
108 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
109 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
115 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
116 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
117 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
118 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
119 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
120 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
121 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
122 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
123 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
124 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
125 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
126 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
127 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
128 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
129 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
130 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
131 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
132 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
133 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
134 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
135 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
136 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
137 2508501050 Microvirga lupini Lut6 Isolate Nodule
138 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
139 2773857925 Microvirga vignae BR3299 Isolate Unclassified
140 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
141 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
142 2841911363 Bosea caraganae RCAM04685 Isolate Nodule
143 2841917233 Bosea caraganae RCAM04680 Isolate Nodule
144 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
145 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.89
Metatranscriptomes 1.11
Isolates 5

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.56
Nodule 2.78
Rhizoplane 0.56
Rhizosphere 62.78
Stem 0
Stem Tuber 0
Unclassified 1.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105239_10487701 3300010375 Bacteria 1400
2 rootH2_10128919 3300003320 Bacteria 1257
3 Ga0070670_100099295 3300005331 Bacteria 2505
4 Ga0070691_10366187 3300005341 Bacteria 804
5 Ga0070709_10000536 3300005434 Bacteria 22217
6 Ga0070714_100006918 3300005435 Bacteria 8794
7 Ga0070713_100238241 3300005436 Bacteria 1656
8 Ga0070713_101075893 3300005436 Bacteria 777
9 Ga0070710_10000729 3300005437 Bacteria 15658
10 Ga0070711_100001588 3300005439 Bacteria 12517
11 Ga0070711_100506185 3300005439 Bacteria 996
12 Ga0070679_100073901 3300005530 Bacteria 3400
13 Ga0068855_100138527 3300005563 Bacteria 2775
14 Ga0068854_100077390 3300005578 Bacteria 2448
15 Ga0068856_100463404 3300005614 Bacteria 1288
16 Ga0075365_10122701 3300006038 Bacteria 1793
17 Ga0075365_10423494 3300006038 Bacteria 940
18 Ga0075365_10424845 3300006038 Bacteria 938
19 Ga0075368_10319736 3300006042 Bacteria 672
20 Ga0075364_10068602 3300006051 Bacteria 2332
21 Ga0070712_100009614 3300006175 Bacteria 6095
22 Ga0075367_10076875 3300006178 Bacteria 2015
23 Ga0075369_10008398 3300006186 Bacteria 3970
24 Ga0075366_10000186 3300006195 Bacteria 27357
25 Ga0075370_10569157 3300006353 Bacteria 686
26 Ga0105240_10165723 3300009093 Bacteria 2621
27 Ga0105247_10046201 3300009101 Bacteria 2672
28 Ga0105247_10421412 3300009101 Bacteria 956
29 Ga0105241_10031765 3300009174 Bacteria 3954
30 Ga0105237_10007659 3300009545 Bacteria 11801
31 Ga0105237_10069495 3300009545 Bacteria 3517
32 Ga0105237_10445776 3300009545 Bacteria 1300
33 Ga0105238_12376347 3300009551 Unclassified 565
34 Ga0099796_10035897 3300010159 Bacteria 1647
35 Ga0105239_10000037 3300010375 Bacteria 206779
36 Ga0105239_10031476 3300010375 Bacteria 5834
37 Ga0157371_10397845 3300013102 Bacteria 1008
38 Ga0157370_10386064 3300013104 Bacteria 1289
39 Ga0163162_11249805 3300013306 Bacteria 843
40 Ga0157375_11091576 3300013308 Bacteria 934
41 Ga0163163_10597700 3300014325 Bacteria 1166
42 Ga0157379_10038790 3300014968 Bacteria 4249
43 Ga0157376_10983190 3300014969 Bacteria 866
44 Ga0206353_10536070 3300020082 Bacteria 1935
45 Ga0209564_1017214 3300025295 Bacteria 2830
46 Ga0207707_10156494 3300025912 Bacteria 1993
47 Ga0207695_10000657 3300025913 Bacteria 68406
48 Ga0207695_10045986 3300025913 Bacteria 4628
49 Ga0207695_10080919 3300025913 Bacteria 3289
50 Ga0207695_10087389 3300025913 Bacteria 3140
51 Ga0207695_10315900 3300025913 Bacteria 1452
52 Ga0207671_10470377 3300025914 Bacteria 1002
53 Ga0207663_10452420 3300025916 Bacteria 990
54 Ga0207652_10301072 3300025921 Bacteria 1447
55 Ga0207694_10204309 3300025924 Bacteria 1608
56 Ga0207694_10215473 3300025924 Bacteria 1565
57 Ga0207664_10302219 3300025929 Bacteria 1408
58 Ga0207679_10685494 3300025945 Bacteria 929
59 Ga0207667_11222085 3300025949 Bacteria 730
60 Ga0207640_10094485 3300025981 Bacteria 2080
61 Ga0207703_11251646 3300026035 Bacteria 713
62 Ga0207678_10040876 3300026067 Bacteria 4020
63 Ga0207678_11169854 3300026067 Bacteria 681
64 Ga0207702_10387338 3300026078 Bacteria 1345
65 Ga0268266_10001499 3300028379 Bacteria 27597
66 Ga0265338_10384434 3300028800 Bacteria 1003
67 Ga0265338_10779806 3300028800 Bacteria 656
68 Ga0316575_10423803 3300031665 Bacteria 572
69 Ga0265314_10335007 3300031711 Bacteria 837
70 Ga0307405_11937951 3300031731 Bacteria 526
71 Ga0307406_10244159 3300031901 Bacteria 1349
72 Ga0307406_10377172 3300031901 Bacteria 1117
73 Ga0307407_10151988 3300031903 Bacteria 1505
74 Ga0307412_10226389 3300031911 Bacteria 1437
75 Ga0307412_10288433 3300031911 Bacteria 1292
76 Ga0307409_100598433 3300031995 Bacteria 1089
77 Ga0307416_100798043 3300032002 Bacteria 1039
78 Ga0307415_100273505 3300032126 Bacteria 1385
79 Ga0307415_102203057 3300032126 Bacteria 539
80 Ga0307510_10333089 3300033180 Bacteria 972
81 Ga0373925_1614230 3300037068 Bacteria 530
82 Ga0395905_0172000 3300037471 Bacteria 2035
83 Ga0436365_0400610 3300039437 Bacteria 58105
84 Ga0439436_0237278 3300041404 Bacteria 527
85 Ga0439466_0204844 3300041411 Bacteria 600
86 Ga0451837_1272334 3300041494 Bacteria 571
87 Ga0466969_0017108 3300044656 Bacteria 3789
88 Ga0466969_0378659 3300044656 Bacteria 642
89 Ga0466966_0037315 3300044684 Bacteria 3135
90 Ga0466961_0308983 3300044693 Bacteria 965
91 Ga0466963_0149763 3300044694 Bacteria 1620
92 Ga0466968_0045633 3300044735 Bacteria 1860
93 Ga0466970_0735250 3300044765 Bacteria 576
94 Ga0466957_0017962 3300044842 Bacteria 4149
95 Ga0466959_0006985 3300045049 Bacteria 7889
96 Ga0466959_0011805 3300045049 Bacteria 6289
97 Ga0466959_0039299 3300045049 Bacteria 3496
98 Ga0466958_0039627 3300045836 Bacteria 2831
99 Ga0466958_0755086 3300045836 Bacteria 634
100 Ga0495638_0007240 3300046460 Bacteria 7978
101 Ga0495638_0176489 3300046460 Bacteria 1222
102 Ga0495607_0048527 3300046501 Bacteria 2482
103 Ga0495606_0074455 3300046507 Bacteria 2127
104 Ga0495606_0419683 3300046507 Bacteria 692
105 Ga0495610_0199387 3300046512 Bacteria 820
106 Ga0495632_0192860 3300046519 Bacteria 930
107 Ga0495643_0480937 3300046522 Bacteria 537
108 Ga0495648_0180697 3300046524 Bacteria 1073
109 Ga0495597_0222499 3300046542 Bacteria 749
110 Ga0495668_0031810 3300046616 Bacteria 2972
111 Ga0495625_0000051 3300046660 Bacteria 193325
112 Ga0495625_0007772 3300046660 Bacteria 9256
113 Ga0495661_0020554 3300046665 Bacteria 4308
114 Ga0495623_0530315 3300046679 Bacteria 619
115 Ga0495670_0393421 3300046691 Bacteria 748
116 Ga0495660_0088074 3300046810 Bacteria 1618
117 Ga0495636_0463004 3300047318 Bacteria 610
118 Ga0495686_0013176 3300047472 Bacteria 5750
119 Ga0495593_0511011 3300047673 Bacteria 602
120 Ga0496115_0596660 3300048918 Bacteria 878
121 Ga0496116_0000614 3300048919 Bacteria 47004
122 Ga0496117_0012901 3300048920 Bacteria 7326
123 Ga0496117_0313896 3300048920 Bacteria 824
124 Ga0496118_0097893 3300048921 Bacteria 1994
125 Ga0496119_0011563 3300048922 Bacteria 7285
126 Ga0496120_0118746 3300048923 Bacteria 1370
127 Ga0496121_0000066 3300048924 Bacteria 267065
128 Ga0496121_0001547 3300048924 Bacteria 38497
129 Ga0496121_0004034 3300048924 Bacteria 20175
130 Ga0496122_0004370 3300048925 Bacteria 17629
131 Ga0496123_0046249 3300048926 Bacteria 2953
132 Ga0496123_0097044 3300048926 Bacteria 1728
133 Ga0496124_0203926 3300048927 Bacteria 1501
134 Ga0496125_0005549 3300048928 Bacteria 13958
135 Ga0496125_0042370 3300048928 Bacteria 3878
136 Ga0496126_0002819 3300048929 Bacteria 22792
137 Ga0496126_0039648 3300048929 Bacteria 4369
138 Ga0501318_018726 3300049534 Bacteria 858
139 Ga0501209_233843 3300049656 Bacteria 572
140 Ga0501261_074496 3300049690 Bacteria 602
141 Ga0501045_0740343 3300049824 Bacteria 725
142 Ga0501212_020751 3300049851 Bacteria 1015
143 nmdc:mga00v17_52416_c1 3300050491 Bacteria 2482
144 nmdc:mga0yw44_4316_c1 3300050492 Bacteria 6491
145 nmdc:mga0yw44_45839_c1 3300050492 Bacteria 2623
146 nmdc:mga0k408_414_c1 3300050493 Bacteria 23298
147 nmdc:mga06z11_53325_c1 3300050494 Bacteria 2079
148 nmdc:mga07m45_330209_c1 3300050496 Bacteria 886
149 nmdc:mga07m45_450925_c1 3300050496 Unclassified 746
150 nmdc:mga08y16_1465367_c1 3300050511 Bacteria 644
151 nmdc:mga0sz30_61573_c1 3300050516 Bacteria 1604
152 Ga0495619_0135536 3300053085 Bacteria 1694
153 Ga0500578_0174888 3300053086 Bacteria 1326
154 Ga0500643_005118 3300053087 Bacteria 5724
155 Ga0500644_0029087 3300053088 Bacteria 1734
156 Ga0500646_0013458 3300053090 Bacteria 2117
157 Ga0500651_0008591 3300053093 Bacteria 6025
158 Ga0500641_0010600 3300053096 Bacteria 3334
159 Ga0500556_0000030 3300053104 Bacteria 165098
160 Ga0500562_085302 3300053108 Bacteria 855
161 Ga0500569_076247 3300053109 Bacteria 1064
162 Ga0500594_0098319 3300053118 Bacteria 897
163 Ga0500652_000170 3300053131 Bacteria 25102
164 Ga0500658_0137331 3300053134 Bacteria 1094
165 Ga0500577_0147359 3300053142 Bacteria 997
166 Ga0500616_0000413 3300053153 Bacteria 57779
167 Ga0500616_0001859 3300053153 Bacteria 19065
168 Ga0500622_0013322 3300053156 Bacteria 4436
169 Ga0500627_0128864 3300053158 Bacteria 1142
170 Ga0500634_0215991 3300053161 Bacteria 828
171 Ga0500645_085493 3300053730 Bacteria 897
172 2508728829 2508501050 Bacteria 9633614
173 2517893264 2517572143 Bacteria 9484767
174 2774873274 2773857925 Bacteria 6472445
175 2776261942 2775506901 Bacteria 9631051
176 2835320035 2835312727 Bacteria 7413381
177 2841913798 2841911363 Bacteria 6173697
178 2841918490 2841917233 Bacteria 6173500
179 2861692023 2861691609 Bacteria 5628931
180 2906642269 2906635258 Bacteria 8601019
181 Ga0105239_10487701
182 rootH2_10128919
183 Ga0070670_100099295
184 Ga0070691_10366187
185 Ga0070709_10000536
186 Ga0070714_100006918
187 Ga0070713_100238241
188 Ga0070713_101075893
189 Ga0070710_10000729
190 Ga0070711_100001588
191 Ga0070711_100506185
192 Ga0070679_100073901
193 Ga0068855_100138527
194 Ga0068854_100077390
195 Ga0068856_100463404
196 Ga0075365_10122701
197 Ga0075365_10423494
198 Ga0075365_10424845
199 Ga0075368_10319736
200 Ga0075364_10068602
201 Ga0070712_100009614
202 Ga0075367_10076875
203 Ga0075369_10008398
204 Ga0075366_10000186
205 Ga0075370_10569157
206 Ga0105240_10165723
207 Ga0105247_10046201
208 Ga0105247_10421412
209 Ga0105241_10031765
210 Ga0105237_10007659
211 Ga0105237_10069495
212 Ga0105237_10445776
213 Ga0105238_12376347
214 Ga0099796_10035897
215 Ga0105239_10000037
216 Ga0105239_10031476
217 Ga0157371_10397845
218 Ga0157370_10386064
219 Ga0163162_11249805
220 Ga0157375_11091576
221 Ga0163163_10597700
222 Ga0157379_10038790
223 Ga0157376_10983190
224 Ga0206353_10536070
225 Ga0209564_1017214
226 Ga0207707_10156494
227 Ga0207695_10000657
228 Ga0207695_10045986
229 Ga0207695_10080919
230 Ga0207695_10087389
231 Ga0207695_10315900
232 Ga0207671_10470377
233 Ga0207663_10452420
234 Ga0207652_10301072
235 Ga0207694_10204309
236 Ga0207694_10215473
237 Ga0207664_10302219
238 Ga0207679_10685494
239 Ga0207667_11222085
240 Ga0207640_10094485
241 Ga0207703_11251646
242 Ga0207678_10040876
243 Ga0207678_11169854
244 Ga0207702_10387338
245 Ga0268266_10001499
246 Ga0265338_10384434
247 Ga0265338_10779806
248 Ga0316575_10423803
249 Ga0265314_10335007
250 Ga0307405_11937951
251 Ga0307406_10244159
252 Ga0307406_10377172
253 Ga0307407_10151988
254 Ga0307412_10226389
255 Ga0307412_10288433
256 Ga0307409_100598433
257 Ga0307416_100798043
258 Ga0307415_100273505
259 Ga0307415_102203057
260 Ga0307510_10333089
261 Ga0373925_1614230
262 Ga0395905_0172000
263 Ga0436365_0400610
264 Ga0439436_0237278
265 Ga0439466_0204844
266 Ga0451837_1272334
267 Ga0466969_0017108
268 Ga0466969_0378659
269 Ga0466966_0037315
270 Ga0466961_0308983
271 Ga0466963_0149763
272 Ga0466968_0045633
273 Ga0466970_0735250
274 Ga0466957_0017962
275 Ga0466959_0006985
276 Ga0466959_0011805
277 Ga0466959_0039299
278 Ga0466958_0039627
279 Ga0466958_0755086
280 Ga0495638_0007240
281 Ga0495638_0176489
282 Ga0495607_0048527
283 Ga0495606_0074455
284 Ga0495606_0419683
285 Ga0495610_0199387
286 Ga0495632_0192860
287 Ga0495643_0480937
288 Ga0495648_0180697
289 Ga0495597_0222499
290 Ga0495668_0031810
291 Ga0495625_0000051
292 Ga0495625_0007772
293 Ga0495661_0020554
294 Ga0495623_0530315
295 Ga0495670_0393421
296 Ga0495660_0088074
297 Ga0495636_0463004
298 Ga0495686_0013176
299 Ga0495593_0511011
300 Ga0496115_0596660
301 Ga0496116_0000614
302 Ga0496117_0012901
303 Ga0496117_0313896
304 Ga0496118_0097893
305 Ga0496119_0011563
306 Ga0496120_0118746
307 Ga0496121_0000066
308 Ga0496121_0001547
309 Ga0496121_0004034
310 Ga0496122_0004370
311 Ga0496123_0046249
312 Ga0496123_0097044
313 Ga0496124_0203926
314 Ga0496125_0005549
315 Ga0496125_0042370
316 Ga0496126_0002819
317 Ga0496126_0039648
318 Ga0501318_018726
319 Ga0501209_233843
320 Ga0501261_074496
321 Ga0501045_0740343
322 Ga0501212_020751
323 nmdc:mga00v17_52416_c1
324 nmdc:mga0yw44_4316_c1
325 nmdc:mga0yw44_45839_c1
326 nmdc:mga0k408_414_c1
327 nmdc:mga06z11_53325_c1
328 nmdc:mga07m45_330209_c1
329 nmdc:mga07m45_450925_c1
330 nmdc:mga08y16_1465367_c1
331 nmdc:mga0sz30_61573_c1
332 Ga0495619_0135536
333 Ga0500578_0174888
334 Ga0500643_005118
335 Ga0500644_0029087
336 Ga0500646_0013458
337 Ga0500651_0008591
338 Ga0500641_0010600
339 Ga0500556_0000030
340 Ga0500562_085302
341 Ga0500569_076247
342 Ga0500594_0098319
343 Ga0500652_000170
344 Ga0500658_0137331
345 Ga0500577_0147359
346 Ga0500616_0000413
347 Ga0500616_0001859
348 Ga0500622_0013322
349 Ga0500627_0128864
350 Ga0500634_0215991
351 Ga0500645_085493
352 2508728829
353 2517893264
354 2774873274
355 2776261942
356 2835320035
357 2841913798
358 2841918490
359 2861692023
360 2906642269

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01638

HxlR

HxlR-like helix-turn-helix

23

113

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
5j6x-assembly2.cif.gz_B crystal structure of the apo-zalpha of zebrafish pkz 0.9025 41 101
1yyv-assembly1.cif.gz_B putative transcriptional regulator ytfh from salmonella typhimurium 0.8974 27 129
4a5n-assembly2.cif.gz_D redoxregulator hypr in its reduced form 0.8903 26 126
7ne9-assembly1.cif.gz_CCC a single sensor controls large variations in zinc quotas in a marine cyanobacterium 0.8877 36 101
2hzt-assembly1.cif.gz_B crystal structure of a putative hth-type transcriptional regulator ytcd 0.8825 26 121
ID Description Score Start End Superfamily
5j6xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9025 41 101 1.10.10.10
af_P0ACN2_1_125_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8995 27 129 1.10.10.10
af_P9WMG3_11_158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8913 27 122 1.10.10.10
1yyvB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8846 27 129 1.10.10.10
5hs7B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8838 24 119 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4R1NUX0-F1-model_v4 deleted 0.9695 31 133
AF-A0A0B6FIN6-F1-model_v4 deleted 0.9543 28 127
AF-A0A7H0ITL4-F1-model_v4 Helix-turn-helix transcriptional regulator 0.951 27 136 GO:0003677
AF-A0A094UG36-F1-model_v4 HxlR family transcriptional regulator 0.9476 28 124 GO:0003677
AF-A0A1T5MNM8-F1-model_v4 Transcriptional regulator, HxlR family 0.9456 27 133 GO:0003677
GO:0005737

Map