F274008

General Info

Members Datasets Scaffolds Average Seq Length
179 57 40 376

Family's Representative Sequence

Representative Sequence 3300027357|Ga0209589_1009826|Ga0209589_10098264
Length 439
Sequence VTPDQPGGTISIAGDQAGSALTQSANFGFIGPVCSRLTPSRCAPGVHKSMRRLLIGKFMTKQDSRTRPYDAVSRRSLLQSTAALLGLPFVAKAAVAFGQEKLAGTGEVLVYSYGGSFTENLRRYVFAPFTKATGIRVVDVTADFAEPQIKAMSAAKRVDWDIAFVSPFFQGYVEMQQAGTFLPIDYSLWDDEALKGVPESARLTDAVIAFQNATLLVYDERAFPKSGPKNWADFWNVKEFPGPRGLNGGGGPSPLLIALMADGVAHKDLWPLTDDKIDRALKKLDEIKPHITKWWTAGGEPIQLLLNREYALTSAFDGRTLAAIKQGAPIRIVWDGATLGDNHWTVLKGGPNSENAQKFIAFVNRAEIASAFTQWTGYPGPNLNQLKYLPADLVPLISINPDNAAKTVRLDTDWLTAKRADGKTNADHIQERWLTWRAQ

Samples

Sample ID Description Type Environment
1 2513237092 Bradyrhizobium sp. WSM1743 Isolate Nodule
2 2617270735 Bradyrhizobium shewense ERR11 Isolate Nodule
3 2841974524 Bradyrhizobium sp. CIR48 Isolate Nodule
4 2847670302 Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 Isolate Nodule
5 2871495908 Mesorhizobium sp. M1C.F.Ca.ET.193.01.1.1 Isolate Nodule
6 2874590934 Bradyrhizobium canariense UBMA181 Isolate Nodule
7 2874612657 Bradyrhizobium forestalis INPA54B Isolate Nodule
8 2876771140 Bradyrhizobium canariense UBMA192 Isolate Nodule
9 2876818435 Bradyrhizobium canariense UBMA195 Isolate Nodule
10 2878760144 Mesorhizobium sp. M1C.F.Ca.ET.192.01.1.1 Isolate Nodule
11 2878767105 Mesorhizobium sp. M1C.F.Ca.ET.144.01.1.1 Isolate Nodule
12 2879074833 Bradyrhizobium canariense UBMA171 Isolate Nodule
13 2879127579 Bradyrhizobium canariense UBMA052 Isolate Nodule
14 2879142872 Bradyrhizobium canariense UBMA061 Isolate Nodule
15 2903540706 Mesorhizobium sp. M1C.F.Ca.ET.212.01.1.1 Isolate Nodule
16 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
17 2935608549 Bradyrhizobium sp. RT6a Isolate Nodule
18 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
19 2935648319 Bradyrhizobium sp. JR4.3 Isolate Nodule
20 2935656913 Bradyrhizobium sp. JR5.3 Isolate Nodule
21 2935703347 Bradyrhizobium sp. LA6.10 Isolate Nodule
22 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
23 2935819856 Bradyrhizobium sp. RT3b Isolate Nodule
24 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
25 2935847175 Bradyrhizobium sp. RT5a Isolate Nodule
26 2935916978 Bradyrhizobium sp. F1.13.3 Isolate Nodule
27 2935975950 Bradyrhizobium sp. GM2.2 Isolate Nodule
28 2936011229 Bradyrhizobium sp. JR1.1 Isolate Nodule
29 2936019824 Bradyrhizobium sp. JR1.5 Isolate Nodule
30 2936028420 Bradyrhizobium sp. JR1.7 Isolate Nodule
31 2936046547 Bradyrhizobium sp. JR3.12 Isolate Nodule
32 2936055302 Bradyrhizobium sp. JR4.1 Isolate Nodule
33 2937994558 Mesorhizobium sp. M1C.F.Ca.ET.187.01.1.1 Isolate Nodule
34 2958165035 Mesorhizobium sp. M1C.F.Ca.ET.196.01.1.1 Isolate Nodule
35 2961163497 Mesorhizobium sp. M1C.F.Ca.ET.176.01.1.1 Isolate Nodule
36 2965018300 Mesorhizobium sp. M1C.F.Ca.ET.188.01.1.1 Isolate Nodule
37 2968171901 Mesorhizobium sp. M1C.F.Ca.ET.189.01.1.1 Isolate Nodule
38 2970554993 Mesorhizobium sp. M1C.F.Ca.ET.210.01.1.1 Isolate Nodule
39 2987659509 Mesorhizobium sp. M1C.F.Ca.ET.204.01.1.1 Isolate Nodule
40 3000135777 Unclassified bacterium M00.F.Ca.ET.205.01.1.1 Isolate Unclassified
41 3004188549 Mesorhizobium sp. M1C.F.Ca.ET.195.01.1.1 Isolate Nodule
42 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
43 3005587118 Bradyrhizobium glycinis CNPSo 4016 Isolate Unclassified
44 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
45 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
46 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
47 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
48 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
49 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
50 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
51 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
52 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
53 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule
54 8016603502 Bradyrhizobium sp. LB7.2 Isolate Nodule
55 8016630954 Bradyrhizobium sp. F1.13.1 Isolate Nodule
56 8019629233 Bradyrhizobium sp. GM6.1 Isolate Nodule
57 8057874678 Rhizobium acaciae 1AS12 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 31.84
Metatranscriptomes 0
Isolates 68.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 94.97
Rhizoplane 0
Rhizosphere 0
Stem 0
Stem Tuber 0
Unclassified 5.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0099824_1011987 3300006942 Bacteria 9603
2 Ga0099824_1014081 3300006942 Bacteria 8074
3 Ga0099824_1014504 3300006942 Bacteria 7799
4 Ga0099824_1023124 3300006942 Bacteria 3929
5 Ga0099824_1025787 3300006942 Bacteria 3151
6 Ga0099824_1028787 3300006942 Unclassified 2465
7 Ga0099822_1014795 3300006943 Bacteria 8899
8 Ga0099822_1026629 3300006943 Bacteria 4868
9 Ga0214544_1000277 3300021320 Bacteria 85781
10 Ga0214544_1000377 3300021320 Bacteria 78659
11 Ga0214544_1003153 3300021320 Bacteria 34430
12 Ga0214544_1007069 3300021320 Bacteria 20081
13 Ga0214544_1008236 3300021320 Bacteria 17548
14 Ga0214544_1009278 3300021320 Bacteria 15549
15 Ga0214544_1024118 3300021320 Bacteria 3235
16 Ga0214542_1000879 3300021321 Bacteria 58206
17 Ga0214542_1001978 3300021321 Bacteria 42477
18 Ga0214542_1002098 3300021321 Bacteria 41259
19 Ga0214542_1002162 3300021321 Bacteria 40696
20 Ga0214542_1006783 3300021321 Bacteria 20546
21 Ga0214542_1007823 3300021321 Bacteria 18256
22 Ga0214542_1008701 3300021321 Bacteria 16454
23 Ga0214542_1010378 3300021321 Bacteria 13631
24 Ga0214542_1013292 3300021321 Bacteria 10023
25 Ga0214542_1019301 3300021321 Bacteria 5419
26 Ga0214542_1020043 3300021321 Bacteria 5036
27 Ga0214543_1000066 3300021327 Bacteria 126288
28 Ga0214543_1002344 3300021327 Bacteria 37154
29 Ga0214543_1004129 3300021327 Bacteria 27729
30 Ga0214543_1008437 3300021327 Bacteria 16851
31 Ga0209389_1000024 3300027296 Bacteria 150002
32 Ga0209389_1000218 3300027296 Bacteria 39544
33 Ga0209589_1000505 3300027357 Bacteria 55405
34 Ga0209589_1001412 3300027357 Bacteria 39544
35 Ga0209589_1008757 3300027357 Bacteria 15643
36 Ga0209589_1009826 3300027357 Bacteria 14232
37 Ga0209589_1014952 3300027357 Bacteria 9508
38 Ga0209589_1015682 3300027357 Bacteria 8982
39 Ga0209489_100052 3300027361 Bacteria 150002
40 Ga0209489_102170 3300027361 Bacteria 40185

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 8019629233 8019631806 335
2 iso_pu_bacteria 2847670302 2847674106 349
3 iso_pu_bacteria 2871495908 2871501719 349
4 iso_pu_bacteria 2878760144 2878765626 349
5 iso_pu_bacteria 2878767105 2878772816 349
6 iso_pu_bacteria 2903540706 2903546539 349
7 iso_pu_bacteria 2937994558 2938000399 349
8 iso_pu_bacteria 2958165035 2958170796 349
9 iso_pu_bacteria 2961163497 2961169247 349
10 iso_pu_bacteria 2965018300 2965023987 349
11 iso_pu_bacteria 2968171901 2968177630 349
12 iso_pu_bacteria 2970554993 2970560476 349
13 iso_pu_bacteria 2987659509 2987665346 349
14 iso_pu_bacteria 3000135777 3000138123 349
15 iso_pu_bacteria 3004188549 3004194399 349
16 3300027357 Ga0209589_1015682 Ga0209589_101568210 363
17 iso_pu_bacteria 2958165035 2958170811 363
18 iso_pu_bacteria 2961163497 2961169262 363
19 iso_pu_bacteria 2965018300 2965024002 363
20 iso_pu_bacteria 2970554993 2970560491 363
21 iso_pu_bacteria 2987659509 2987665361 363
22 iso_pu_bacteria 3000135777 3000138138 363
23 iso_pu_bacteria 3004188549 3004194414 363
24 iso_pu_bacteria 2937994558 2938000414 364
25 iso_pu_bacteria 2968171901 2968177645 364
26 iso_pu_bacteria 8006984368 8006991411 365
27 iso_pu_bacteria 2874590934 2874592375 366
28 iso_pu_bacteria 2876771140 2876772653 366
29 iso_pu_bacteria 2876818435 2876819987 366
30 iso_pu_bacteria 2879074833 2879076420 366
31 iso_pu_bacteria 3005587118 3005590795 370
32 iso_pu_bacteria 2617270735 2617353977 371
33 iso_pu_bacteria 2936055302 2936063050 371
34 iso_pu_bacteria 3005587118 3005593436 371
35 iso_pu_bacteria 8019629233 8019631878 371
36 iso_pu_bacteria 2936055302 2936063692 372
37 3300021320 Ga0214544_1008236 Ga0214544_10082361 373
38 3300021321 Ga0214542_1013292 Ga0214542_10132922 373
39 iso_pu_bacteria 2617270735 2617353973 373
40 iso_pu_bacteria 2841974524 2841976930 373
41 iso_pu_bacteria 2841974524 2841977008 373
42 iso_pu_bacteria 2874590934 2874592380 373
43 iso_pu_bacteria 2874590934 2874592383 373
44 iso_pu_bacteria 2874612657 2874618548 373
45 iso_pu_bacteria 2874612657 2874619204 373
46 iso_pu_bacteria 2876771140 2876772658 373
47 iso_pu_bacteria 2876771140 2876772661 373
48 iso_pu_bacteria 2876818435 2876819992 373
49 iso_pu_bacteria 2876818435 2876819995 373
50 iso_pu_bacteria 2879074833 2879076425 373
51 iso_pu_bacteria 2879074833 2879076428 373
52 iso_pu_bacteria 2879127579 2879128515 373
53 iso_pu_bacteria 2879127579 2879128612 373
54 iso_pu_bacteria 2879142872 2879143811 373
55 iso_pu_bacteria 2879142872 2879143908 373
56 iso_pu_bacteria 2904690495 2904693068 373
57 iso_pu_bacteria 2935608549 2935614147 373
58 iso_pu_bacteria 2935638405 2935646295 373
59 iso_pu_bacteria 2935777560 2935785103 373
60 iso_pu_bacteria 2935819856 2935827463 373
61 iso_pu_bacteria 2935827899 2935836505 373
62 iso_pu_bacteria 2935847175 2935854753 373
63 iso_pu_bacteria 2935975950 2935983843 373
64 iso_pu_bacteria 2936055302 2936061736 373
65 iso_pu_bacteria 8016583857 8016584806 373
66 iso_pu_bacteria 8016603502 8016613111 373
67 iso_pu_bacteria 8016630954 8016634342 373
68 iso_pu_bacteria 8019629233 8019631880 373
69 3300006942 Ga0099824_1028787 Ga0099824_10287873 374
70 3300027296 Ga0209389_1000024 Ga0209389_10000243 374
71 3300027357 Ga0209589_1000505 Ga0209589_10005053 374
72 3300027361 Ga0209489_100052 Ga0209489_1000523 374
73 iso_pu_bacteria 2513237092 2513625943 374
74 iso_pu_bacteria 2617270735 2617354262 374
75 iso_pu_bacteria 2935916978 2935925200 374
76 3300021321 Ga0214542_1020043 Ga0214542_10200432 375
77 3300021327 Ga0214543_1000066 Ga0214543_1000066108 375
78 iso_pu_bacteria 2617270735 2617354704 375
79 iso_pu_bacteria 2841974524 2841976951 375
80 iso_pu_bacteria 2847670302 2847674092 375
81 iso_pu_bacteria 2871495908 2871501733 375
82 iso_pu_bacteria 2878760144 2878765640 375
83 iso_pu_bacteria 2878767105 2878772830 375
84 iso_pu_bacteria 2879074833 2879075149 375
85 iso_pu_bacteria 2903540706 2903546553 375
86 iso_pu_bacteria 2904690495 2904693515 375
87 iso_pu_bacteria 2935648319 2935656472 375
88 iso_pu_bacteria 2935648319 2935656837 375
89 iso_pu_bacteria 2935656913 2935665301 375
90 iso_pu_bacteria 2935656913 2935665664 375
91 iso_pu_bacteria 2935703347 2935712896 375
92 iso_pu_bacteria 2935703347 2935713179 375
93 iso_pu_bacteria 2935777560 2935784834 375
94 iso_pu_bacteria 2935819856 2935827632 375
95 iso_pu_bacteria 2935819856 2935827649 375
96 iso_pu_bacteria 2935819856 2935827653 375
97 iso_pu_bacteria 2935847175 2935854935 375
98 iso_pu_bacteria 2935847175 2935854952 375
99 iso_pu_bacteria 2935847175 2935854956 375
100 iso_pu_bacteria 2935916978 2935925187 375
101 iso_pu_bacteria 2935975950 2935984009 375
102 iso_pu_bacteria 2935975950 2935984069 375
103 iso_pu_bacteria 2936011229 2936019339 375
104 iso_pu_bacteria 2936011229 2936019720 375
105 iso_pu_bacteria 2936019824 2936027921 375
106 iso_pu_bacteria 2936019824 2936028334 375
107 iso_pu_bacteria 2936028420 2936036704 375
108 iso_pu_bacteria 2936028420 2936037194 375
109 iso_pu_bacteria 2936046547 2936054803 375
110 iso_pu_bacteria 2936046547 2936055198 375
111 iso_pu_bacteria 3005474847 3005482333 375
112 iso_pu_bacteria 8006984368 8006991429 375
113 iso_pu_bacteria 8006984368 8006993366 375
114 iso_pu_bacteria 8006984368 8006994202 375
115 iso_pu_bacteria 8016583857 8016584700 375
116 iso_pu_bacteria 8016583857 8016584747 375
117 iso_pu_bacteria 8016603502 8016612795 375
118 iso_pu_bacteria 8019629233 8019631856 375
119 iso_pu_bacteria 8019629233 8019631875 375
120 iso_pu_bacteria 8057874678 8057880321 375
121 iso_pu_bacteria 8057874678 8057880323 375
122 iso_pu_bacteria 2874612657 2874618538 376
123 iso_pu_bacteria 2935819856 2935827776 376
124 iso_pu_bacteria 2935847175 2935855060 376
125 iso_pu_bacteria 2936055302 2936061740 376
126 3300006942 Ga0099824_1014081 Ga0099824_10140814 377
127 3300006943 Ga0099822_1026629 Ga0099822_10266297 377
128 3300021320 Ga0214544_1000377 Ga0214544_100037774 377
129 3300021320 Ga0214544_1024118 Ga0214544_10241183 377
130 3300021321 Ga0214542_1000879 Ga0214542_100087945 377
131 3300021321 Ga0214542_1019301 Ga0214542_10193013 377
132 3300021327 Ga0214543_1008437 Ga0214543_10084376 377
133 3300027296 Ga0209389_1000024 Ga0209389_100002462 377
134 3300027357 Ga0209589_1008757 Ga0209589_10087574 377
135 3300027357 Ga0209589_1014952 Ga0209589_101495212 377
136 3300027361 Ga0209489_100052 Ga0209489_10005262 377
137 iso_pu_bacteria 2935819856 2935827650 377
138 iso_pu_bacteria 2935847175 2935854953 377
139 3300006942 Ga0099824_1011987 Ga0099824_10119879 379
140 3300006942 Ga0099824_1014504 Ga0099824_10145047 379
141 3300006942 Ga0099824_1023124 Ga0099824_10231243 379
142 3300006942 Ga0099824_1025787 Ga0099824_10257872 379
143 3300006943 Ga0099822_1014795 Ga0099822_101479511 379
144 3300006943 Ga0099822_1014795 Ga0099822_10147954 379
145 3300021320 Ga0214544_1000277 Ga0214544_10002778 379
146 3300021320 Ga0214544_1003153 Ga0214544_100315321 379
147 3300021320 Ga0214544_1007069 Ga0214544_100706911 379
148 3300021320 Ga0214544_1009278 Ga0214544_100927813 379
149 3300021321 Ga0214542_1001978 Ga0214542_100197820 379
150 3300021321 Ga0214542_1002098 Ga0214542_100209829 379
151 3300021321 Ga0214542_1002162 Ga0214542_100216253 379
152 3300021321 Ga0214542_1006783 Ga0214542_100678316 379
153 3300021321 Ga0214542_1006783 Ga0214542_10067838 379
154 3300021321 Ga0214542_1007823 Ga0214542_10078232 379
155 3300021321 Ga0214542_1008701 Ga0214542_100870114 379
156 3300021321 Ga0214542_1010378 Ga0214542_101037813 379
157 3300021327 Ga0214543_1000066 Ga0214543_1000066144 379
158 3300021327 Ga0214543_1002344 Ga0214543_100234410 379
159 3300021327 Ga0214543_1002344 Ga0214543_100234416 379
160 3300021327 Ga0214543_1002344 Ga0214543_100234433 379
161 3300021327 Ga0214543_1004129 Ga0214543_100412923 379
162 3300027296 Ga0209389_1000024 Ga0209389_100002411 379
163 3300027296 Ga0209389_1000024 Ga0209389_100002422 379
164 3300027296 Ga0209389_1000024 Ga0209389_10000248 379
165 3300027296 Ga0209389_1000218 Ga0209389_100021850 379
166 3300027357 Ga0209589_1000505 Ga0209589_100050511 379
167 3300027357 Ga0209589_1000505 Ga0209589_100050522 379
168 3300027357 Ga0209589_1000505 Ga0209589_10005058 379
169 3300027357 Ga0209589_1001412 Ga0209589_100141250 379
170 3300027357 Ga0209589_1009826 Ga0209589_10098264 379
171 3300027357 Ga0209589_1009826 Ga0209589_10098269 379
172 3300027361 Ga0209489_100052 Ga0209489_10005211 379
173 3300027361 Ga0209489_100052 Ga0209489_10005222 379
174 3300027361 Ga0209489_100052 Ga0209489_1000528 379
175 3300027361 Ga0209489_102170 Ga0209489_10217052 379
176 iso_pu_bacteria 2935608549 2935616396 379
177 iso_pu_bacteria 2935638405 2935647926 379
178 iso_pu_bacteria 2935827899 2935837405 379
179 iso_pu_bacteria 8006984368 8006991416 379

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13416

SBP_bac_8

Bacterial extracellular solute-binding protein

125

389

0.87

PF01547

SBP_bac_1

Bacterial extracellular solute-binding protein

114

369

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
6dgv-assembly1.cif.gz_A igabasnfr fluorescent gaba sensor precursor 0.9173 49 322
4i1d-assembly1.cif.gz_A the crystal structure of an abc transporter substrate-binding protein from bradyrhizobium japonicum usda 110 0.9052 47 376
4eq7-assembly1.cif.gz_A structure of atu4243-gaba receptor 0.9014 49 377
4i1d-assembly1.cif.gz_A the crystal structure of an abc transporter substrate-binding protein from bradyrhizobium japonicum usda 110 0.8973 47 376
4eq7-assembly1.cif.gz_A structure of atu4243-gaba receptor 0.8753 49 377
ID Description Score Start End Superfamily
4eq7B02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9347 154 274 3.40.190.10
5l9sB02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9336 154 275 3.40.190.10
6hlzA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9148 154 274 3.40.190.10
5l9sB02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8907 154 275 3.40.190.10
4i1dC01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8851 49 346 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A0R3CM65-F1-model_v4 Extracellular solute-binding protein 0.9825 196 379 GO:0015888
GO:0030288
GO:0030975
GO:0030976
AF-A0A0R3CZB7-F1-model_v4 ABC transporter substrate-binding protein 0.975 30 379 GO:0042597
AF-A0A0R3CM65-F1-model_v4 Extracellular solute-binding protein 0.9721 196 379 GO:0015888
GO:0030288
GO:0030975
GO:0030976
AF-A0A0R3CZB7-F1-model_v4 ABC transporter substrate-binding protein 0.9695 30 379 GO:0042597
AF-A0A2T5AR06-F1-model_v4 Putative spermidine/putrescine transport system substrate-binding protein 0.9428 50 379 GO:0042597

Feature Viewer

pLDDT pTM Quality
89.74 0.84 High
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Predicted Structure (AlphaFold2)

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