F273766

General Info

Members Datasets Scaffolds Average Seq Length
179 115 358 440

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10104150|Ga0105248_101041503
Length 493
Sequence MKTLSISLLIATCGALSAQSPQAPNPTQQAALQVDGGTPIYKITVVARTTKAINYHHRSGSTHIGFRGTALMPAARGEAKVESKQGVIKIDAEMDRLQPATTFGPEYLTYVMWAITPEGRATNIGEVLLSGGKSKLNSTSELQTFGLIITAEPYFAVTQPSDVVVMENFVREDTRGTIEDVDAKYELLQRGQYVLNVKPNDVIMTLDPKIPLELYEARNAVRIARWTGADRYAADTYAKAVNGLENAEGYLIGKGGKKPIGTVAREAVQMAEDARIITLKKMQEEGLNTERASAANREASARSETVIERERSNRSESARDRVTREAARADAVRQRELALAAENDRTQLRKDLLAQFNLILETRDTARGLIVNMSDVLFDSGKFTLRAGAREKLAKVSGIFSGHPGLKLEVEGHTDSVGSDEMNQTLSENRATSVREYLVKEGVTSANVTSNGFGKTQPVTSNDTAAGRQQNRRVELVVSGEIIGTRIGTIALR

Samples

Sample ID Description Type Environment
1 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
26 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300019182 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE1 metaT (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300019188 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE2 metaT (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
49 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300023672 Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
81 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
82 3300030880 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
84 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
85 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
86 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
87 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
88 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
89 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
90 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
91 3300032120 Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
92 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
93 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
94 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
95 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
96 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
97 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
98 3300036457 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
99 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
100 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
101 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
102 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
103 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
104 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
105 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
106 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
107 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
108 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
109 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
110 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
113 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
114 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.71
Metatranscriptomes 12.29
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 99.44
Stem 0
Stem Tuber 0
Unclassified 23.46

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105248_10104150 3300009177 Bacteria 3199
2 Ga0070683_100000018 3300005329 Bacteria 193063
3 Ga0070683_100012743 3300005329 Bacteria 7312
4 Ga0070683_100017285 3300005329 Bacteria 6374
5 Ga0070683_100033692 3300005329 Unclassified 4671
6 Ga0070683_100119569 3300005329 Bacteria 2488
7 Ga0070680_100007609 3300005336 Bacteria 8263
8 Ga0070680_100063436 3300005336 Bacteria 3026
9 Ga0070660_100129036 3300005339 Unclassified 2022
10 Ga0070671_100021087 3300005355 Bacteria 5320
11 Ga0070714_100108564 3300005435 Bacteria 2454
12 Ga0070713_100031505 3300005436 Bacteria 4224
13 Ga0070713_100081294 3300005436 Bacteria 2764
14 Ga0070662_100095854 3300005457 Unclassified 2237
15 Ga0070681_10000954 3300005458 Bacteria 24356
16 Ga0070681_10011684 3300005458 Bacteria 8697
17 Ga0070681_10133239 3300005458 Bacteria 2416
18 Ga0070698_100077280 3300005471 Bacteria 3329
19 Ga0070699_100016422 3300005518 Bacteria 6358
20 Ga0070699_100030623 3300005518 Bacteria 4646
21 Ga0070699_100049036 3300005518 Bacteria 3655
22 Ga0070684_100000011 3300005535 Bacteria 170628
23 Ga0070684_100002831 3300005535 Bacteria 12886
24 Ga0070684_100021447 3300005535 Bacteria 5376
25 Ga0070684_100063835 3300005535 Bacteria 3230
26 Ga0070684_100109128 3300005535 Unclassified 2480
27 Ga0070697_100045106 3300005536 Unclassified 3572
28 Ga0068853_100008037 3300005539 Bacteria 8461
29 Ga0070696_100002321 3300005546 Bacteria 12557
30 Ga0070696_100004592 3300005546 Bacteria 9223
31 Ga0070693_100083600 3300005547 Unclassified 1908
32 Ga0070665_100167155 3300005548 Bacteria 2202
33 Ga0068855_100004663 3300005563 Bacteria 16741
34 Ga0068855_100036982 3300005563 Bacteria 5808
35 Ga0068855_100086800 3300005563 Bacteria 3618
36 Ga0068854_100037859 3300005578 Bacteria 3388
37 Ga0068856_100020164 3300005614 Bacteria 6477
38 Ga0068856_100108223 3300005614 Bacteria 2776
39 Ga0068856_100131169 3300005614 Unclassified 2510
40 Ga0068863_100012358 3300005841 Bacteria 8246
41 Ga0068863_100055730 3300005841 Bacteria 3743
42 Ga0068860_100002595 3300005843 Bacteria 18903
43 Ga0081455_10131357 3300005937 Bacteria 1958
44 Ga0070717_10026700 3300006028 Bacteria 4610
45 Ga0070717_10028272 3300006028 Bacteria 4487
46 Ga0070717_10045945 3300006028 Unclassified 3572
47 Ga0070716_100007361 3300006173 Bacteria 5413
48 Ga0068871_100119686 3300006358 Unclassified 2223
49 Ga0075431_100008554 3300006847 Bacteria 10250
50 Ga0075431_100023451 3300006847 Bacteria 6313
51 Ga0068865_100041082 3300006881 Unclassified 3146
52 Ga0099794_10067549 3300007265 Unclassified 1746
53 Ga0105240_10000404 3300009093 Bacteria 80037
54 Ga0105240_10016039 3300009093 Bacteria 10157
55 Ga0105240_10046834 3300009093 Bacteria 5476
56 Ga0105240_10092053 3300009093 Unclassified 3703
57 Ga0105245_10002167 3300009098 Bacteria 17777
58 Ga0105245_10042066 3300009098 Unclassified 4075
59 Ga0105241_10002908 3300009174 Bacteria 12795
60 Ga0105241_10012070 3300009174 Bacteria 6346
61 Ga0105242_10007381 3300009176 Bacteria 8464
62 Ga0105248_10005579 3300009177 Bacteria 13828
63 Ga0105237_10008460 3300009545 Bacteria 11135
64 Ga0105238_10011604 3300009551 Bacteria 8878
65 Ga0105238_10059226 3300009551 Bacteria 3837
66 Ga0105239_10002878 3300010375 Bacteria 21530
67 Ga0105246_10029688 3300011119 Unclassified 3603
68 Ga0157371_10033528 3300013102 Bacteria 3689
69 Ga0157370_10005799 3300013104 Bacteria 13802
70 Ga0157370_10071862 3300013104 Bacteria 3265
71 Ga0157369_10060707 3300013105 Bacteria 4077
72 Ga0157369_10092512 3300013105 Bacteria 3227
73 Ga0157369_10141507 3300013105 Bacteria 2545
74 Ga0157374_10066601 3300013296 Unclassified 3384
75 Ga0157378_10021502 3300013297 Bacteria 5673
76 Ga0163162_10081365 3300013306 Unclassified 3309
77 Ga0157372_10005796 3300013307 Bacteria 13154
78 Ga0157372_10028266 3300013307 Bacteria 6120
79 Ga0157372_10190027 3300013307 Bacteria 2378
80 Ga0163163_10005968 3300014325 Bacteria 10596
81 Ga0157376_10028566 3300014969 Bacteria 4434
82 Ga0184598_129490 3300019182 Bacteria 1921
83 Ga0184599_143922 3300019188 Bacteria 2269
84 Ga0197907_10200317 3300020069 Bacteria 2491
85 Ga0206356_10401049 3300020070 Unclassified 2928
86 Ga0206356_10919343 3300020070 Bacteria 2793
87 Ga0206356_10985952 3300020070 Unclassified 2707
88 Ga0206352_10684120 3300020078 Unclassified 2582
89 Ga0206350_10558323 3300020080 Bacteria 1956
90 Ga0206350_10736382 3300020080 Bacteria 2152
91 Ga0206354_11480734 3300020081 Unclassified 2203
92 Ga0206353_10283175 3300020082 Bacteria 2001
93 Ga0247553_100041 3300023672 Unclassified 3141
94 Ga0207707_10006192 3300025912 Bacteria 10452
95 Ga0207695_10007441 3300025913 Bacteria 13935
96 Ga0207695_10027055 3300025913 Bacteria 6390
97 Ga0207695_10107579 3300025913 Unclassified 2774
98 Ga0207671_10085804 3300025914 Unclassified 2366
99 Ga0207660_10092276 3300025917 Bacteria 2247
100 Ga0207660_10111946 3300025917 Bacteria 2055
101 Ga0207657_10134352 3300025919 Unclassified 2025
102 Ga0207687_10002022 3300025927 Bacteria 13907
103 Ga0207700_10062638 3300025928 Unclassified 2825
104 Ga0207700_10103712 3300025928 Unclassified 2274
105 Ga0207664_10115312 3300025929 Bacteria 2240
106 Ga0207644_10046865 3300025931 Unclassified 3082
107 Ga0207706_10126855 3300025933 Unclassified 2244
108 Ga0207704_10025329 3300025938 Unclassified 3235
109 Ga0207665_10000053 3300025939 Bacteria 73573
110 Ga0207711_10179195 3300025941 Unclassified 1926
111 Ga0207689_10009217 3300025942 Bacteria 8537
112 Ga0207661_10000025 3300025944 Bacteria 195900
113 Ga0207661_10058555 3300025944 Bacteria 3100
114 Ga0207679_10072513 3300025945 Unclassified 2601
115 Ga0207667_10027481 3300025949 Bacteria 6192
116 Ga0207667_10085701 3300025949 Bacteria 3261
117 Ga0207651_10045556 3300025960 Unclassified 2943
118 Ga0207712_10060369 3300025961 Unclassified 2688
119 Ga0207678_10043300 3300026067 Bacteria 3895
120 Ga0207641_10019790 3300026088 Bacteria 5526
121 Ga0207674_10003468 3300026116 Bacteria 19285
122 Ga0207428_10003208 3300027907 Bacteria 15982
123 Ga0268264_10010450 3300028381 Bacteria 7677
124 Ga0265338_10036176 3300028800 Bacteria 4731
125 Ga0265324_10012304 3300029957 Bacteria 3231
126 Ga0265776_100058 3300030880 Bacteria 2776
127 Ga0265330_10008168 3300031235 Bacteria 5053
128 Ga0265328_10013749 3300031239 Bacteria 3197
129 Ga0265325_10004947 3300031241 Bacteria 8304
130 Ga0265325_10035883 3300031241 Bacteria 2630
131 Ga0265340_10035304 3300031247 Bacteria 2484
132 Ga0265331_10023371 3300031250 Bacteria 3140
133 Ga0265316_10001298 3300031344 Bacteria 26881
134 Ga0265316_10002979 3300031344 Bacteria 17314
135 Ga0265316_10007764 3300031344 Bacteria 10049
136 Ga0265316_10025057 3300031344 Unclassified 4983
137 Ga0265316_10142577 3300031344 Unclassified 1799
138 Ga0265314_10042328 3300031711 Bacteria 3251
139 Ga0265314_10076808 3300031711 Unclassified 2217
140 Ga0265342_10021060 3300031712 Bacteria 4171
141 Ga0265342_10054410 3300031712 Unclassified 2378
142 Ga0316053_100144 3300032120 Unclassified 2524
143 Ga0373934_0039043 3300035086 Bacteria 1870
144 Ga0373956_0017641 3300035119 Bacteria 3012
145 Ga0373927_0000979 3300035695 Bacteria 21720
146 Ga0373927_0031654 3300035695 Unclassified 3446
147 Ga0373933_0016159 3300035724 Bacteria 4171
148 Ga0373947_0007555 3300035725 Bacteria 6288
149 Ga0373937_0025266 3300036401 Bacteria 5363
150 Ga0373937_0043762 3300036401 Bacteria 4089
151 Ga0265778_000669 3300036457 Bacteria 2785
152 Ga0265778_000734 3300036457 Bacteria 2699
153 Ga0265778_000974 3300036457 Bacteria 2462
154 Ga0265778_001520 3300036457 Bacteria 2124
155 Ga0265778_001539 3300036457 Bacteria 2114
156 Ga0265778_001545 3300036457 Bacteria 2112
157 Ga0265778_002100 3300036457 Unclassified 1890
158 Ga0265778_002363 3300036457 Bacteria 1813
159 Ga0373925_0000842 3300037068 Bacteria 28202
160 Ga0436364_0485976 3300037853 Bacteria 4766
161 Ga0453683_0003680 3300044673 Bacteria 11231
162 Ga0451576_0009712 3300045051 Bacteria 11127
163 Ga0451576_0262055 3300045051 Unclassified 1807
164 Ga0451576_0301529 3300045051 Bacteria 1676
165 Ga0495651_0027897 3300046462 Bacteria 4401
166 Ga0495630_0041850 3300046517 Unclassified 3421
167 Ga0495645_0129464 3300046543 Bacteria 1770
168 Ga0495674_0023963 3300047319 Bacteria 5615
169 Ga0495675_0066845 3300047444 Bacteria 2272
170 Ga0495684_0015719 3300047471 Bacteria 5824
171 Ga0495684_0024739 3300047471 Bacteria 4618
172 Ga0501044_0004017 3300049823 Bacteria 16491
173 Ga0501044_0011035 3300049823 Bacteria 9803
174 nmdc:mga09592_145852_c1 3300050508 Bacteria 2041
175 nmdc:mga06r32_34239_c1 3300050510 Bacteria 4789
176 nmdc:mga08x19_9117_c1 3300050514 Bacteria 5924
177 Ga0495601_0035130 3300053077 Bacteria 3127
178 Ga0501084_0050787 3300054114 Bacteria 3470
179 Ga0501082_0002737 3300060353 Bacteria 15402
180 Ga0105248_10104150
181 Ga0070683_100000018
182 Ga0070683_100012743
183 Ga0070683_100017285
184 Ga0070683_100033692
185 Ga0070683_100119569
186 Ga0070680_100007609
187 Ga0070680_100063436
188 Ga0070660_100129036
189 Ga0070671_100021087
190 Ga0070714_100108564
191 Ga0070713_100031505
192 Ga0070713_100081294
193 Ga0070662_100095854
194 Ga0070681_10000954
195 Ga0070681_10011684
196 Ga0070681_10133239
197 Ga0070698_100077280
198 Ga0070699_100016422
199 Ga0070699_100030623
200 Ga0070699_100049036
201 Ga0070684_100000011
202 Ga0070684_100002831
203 Ga0070684_100021447
204 Ga0070684_100063835
205 Ga0070684_100109128
206 Ga0070697_100045106
207 Ga0068853_100008037
208 Ga0070696_100002321
209 Ga0070696_100004592
210 Ga0070693_100083600
211 Ga0070665_100167155
212 Ga0068855_100004663
213 Ga0068855_100036982
214 Ga0068855_100086800
215 Ga0068854_100037859
216 Ga0068856_100020164
217 Ga0068856_100108223
218 Ga0068856_100131169
219 Ga0068863_100012358
220 Ga0068863_100055730
221 Ga0068860_100002595
222 Ga0081455_10131357
223 Ga0070717_10026700
224 Ga0070717_10028272
225 Ga0070717_10045945
226 Ga0070716_100007361
227 Ga0068871_100119686
228 Ga0075431_100008554
229 Ga0075431_100023451
230 Ga0068865_100041082
231 Ga0099794_10067549
232 Ga0105240_10000404
233 Ga0105240_10016039
234 Ga0105240_10046834
235 Ga0105240_10092053
236 Ga0105245_10002167
237 Ga0105245_10042066
238 Ga0105241_10002908
239 Ga0105241_10012070
240 Ga0105242_10007381
241 Ga0105248_10005579
242 Ga0105237_10008460
243 Ga0105238_10011604
244 Ga0105238_10059226
245 Ga0105239_10002878
246 Ga0105246_10029688
247 Ga0157371_10033528
248 Ga0157370_10005799
249 Ga0157370_10071862
250 Ga0157369_10060707
251 Ga0157369_10092512
252 Ga0157369_10141507
253 Ga0157374_10066601
254 Ga0157378_10021502
255 Ga0163162_10081365
256 Ga0157372_10005796
257 Ga0157372_10028266
258 Ga0157372_10190027
259 Ga0163163_10005968
260 Ga0157376_10028566
261 Ga0184598_129490
262 Ga0184599_143922
263 Ga0197907_10200317
264 Ga0206356_10401049
265 Ga0206356_10919343
266 Ga0206356_10985952
267 Ga0206352_10684120
268 Ga0206350_10558323
269 Ga0206350_10736382
270 Ga0206354_11480734
271 Ga0206353_10283175
272 Ga0247553_100041
273 Ga0207707_10006192
274 Ga0207695_10007441
275 Ga0207695_10027055
276 Ga0207695_10107579
277 Ga0207671_10085804
278 Ga0207660_10092276
279 Ga0207660_10111946
280 Ga0207657_10134352
281 Ga0207687_10002022
282 Ga0207700_10062638
283 Ga0207700_10103712
284 Ga0207664_10115312
285 Ga0207644_10046865
286 Ga0207706_10126855
287 Ga0207704_10025329
288 Ga0207665_10000053
289 Ga0207711_10179195
290 Ga0207689_10009217
291 Ga0207661_10000025
292 Ga0207661_10058555
293 Ga0207679_10072513
294 Ga0207667_10027481
295 Ga0207667_10085701
296 Ga0207651_10045556
297 Ga0207712_10060369
298 Ga0207678_10043300
299 Ga0207641_10019790
300 Ga0207674_10003468
301 Ga0207428_10003208
302 Ga0268264_10010450
303 Ga0265338_10036176
304 Ga0265324_10012304
305 Ga0265776_100058
306 Ga0265330_10008168
307 Ga0265328_10013749
308 Ga0265325_10004947
309 Ga0265325_10035883
310 Ga0265340_10035304
311 Ga0265331_10023371
312 Ga0265316_10001298
313 Ga0265316_10002979
314 Ga0265316_10007764
315 Ga0265316_10025057
316 Ga0265316_10142577
317 Ga0265314_10042328
318 Ga0265314_10076808
319 Ga0265342_10021060
320 Ga0265342_10054410
321 Ga0316053_100144
322 Ga0373934_0039043
323 Ga0373956_0017641
324 Ga0373927_0000979
325 Ga0373927_0031654
326 Ga0373933_0016159
327 Ga0373947_0007555
328 Ga0373937_0025266
329 Ga0373937_0043762
330 Ga0265778_000669
331 Ga0265778_000734
332 Ga0265778_000974
333 Ga0265778_001520
334 Ga0265778_001539
335 Ga0265778_001545
336 Ga0265778_002100
337 Ga0265778_002363
338 Ga0373925_0000842
339 Ga0436364_0485976
340 Ga0453683_0003680
341 Ga0451576_0009712
342 Ga0451576_0262055
343 Ga0451576_0301529
344 Ga0495651_0027897
345 Ga0495630_0041850
346 Ga0495645_0129464
347 Ga0495674_0023963
348 Ga0495675_0066845
349 Ga0495684_0015719
350 Ga0495684_0024739
351 Ga0501044_0004017
352 Ga0501044_0011035
353 nmdc:mga09592_145852_c1
354 nmdc:mga06r32_34239_c1
355 nmdc:mga08x19_9117_c1
356 Ga0495601_0035130
357 Ga0501084_0050787
358 Ga0501082_0002737

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00691

OmpA

OmpA family

377

472

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
4zhw-assembly1.cif.gz_A crystal structure of a bacterial signalling protein (n-terminal truncation) 0.9 318 421
6jfw-assembly2.cif.gz_B crystal structure of pa0833 periplasmic domain from pseudomonas aeruginosa reveals an unexpected enlarged peptidoglycan binding pocket 0.8942 288 423
5nhx-assembly1.cif.gz_A periplasmic domain of outer membrane protein a from klebsiella pneumoniae 0.8901 311 421
6iki-assembly1.cif.gz_A crystal structure of yfib(w55l) 0.8873 285 422
6ikj-assembly1.cif.gz_B crystal structure of yfib(f48s) 0.8845 285 421
ID Description Score Start End Superfamily
4zhwA00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;OmpA-like domain 0.9 318 421 3.30.1330.60
6jfwA00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;OmpA-like domain 0.8996 288 423 3.30.1330.60
5n2cC00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;OmpA-like domain 0.8833 313 420 3.30.1330.60
1r1mA00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;OmpA-like domain 0.8795 311 419 3.30.1330.60
5y61D00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;OmpA-like domain 0.8773 313 421 3.30.1330.60
ID Description Score Start End GO Terms
AF-A0A1H0GBI9-F1-model_v4 OmpA-OmpF porin, OOP family 0.948 311 420 GO:0009279
AF-W7Q1D5-F1-model_v4 Flagellar motor protein MotB 0.9474 311 419 GO:0009279
AF-A0A7V3RJM0-F1-model_v4 OmpA family protein 0.9439 341 422 GO:0009279
AF-A0A4Q5T5I0-F1-model_v4 OmpA family protein 0.9434 285 421 GO:0009279
AF-A0A2W0BQY7-F1-model_v4 Uncharacterized protein 0.9426 45 292

Map