F272888

General Info

Members Datasets Scaffolds Average Seq Length
178 130 130 374

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221725|2644682083
Length 427
Sequence LIFIPRVREQIPKIVVIENLKRKLEIWSRTLGIKYWNLFKIWNLKNCNLTQYWNLEKMELSYWELKNWFTNIDYTIVGSGIVGLHTALRLRERFPTAKILVLERGMLPQGASTKNAGFACFGSLSEILEDLKTHSEDDVVNLIEKRWRGLQLLRKRLGDSAIDFKPYGGYELFLKEDEFGFNECVSKISFINEVLKPLFKADVFSKEIDRFGFGNIQEYLIFNPFEAQIDTGNMMQELLKQAVAANILILNQQTVTSYADTGNHVEVVLNNFNFTTHKLLFATNGFAGSLTSGAVKPARAQVLITEPIHNLDIRGTFHLDRGYYYFRNIDNRILLGGGRNLDFEAETTIEFGQTKIVQNKLEDLLKNVILPNQDFQIAHRWSGIMGVGNSKNPVVSQLSENVFCGVRLGGMGVAIGSLIGTELADLI

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
3 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
4 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
5 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
6 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
7 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
8 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
9 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
10 2738541283 Pedobacter sp. OK701 Isolate Unclassified
11 2738541284 Pedobacter sp. YR016 Isolate Unclassified
12 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
13 2738541302 Pedobacter sp. CF074 Isolate Unclassified
14 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
15 2739367651 Pedobacter sp. OK291 Isolate Unclassified
16 2739367656 Pedobacter sp. CF523 Isolate Unclassified
17 2739367663 Pedobacter sp. YR510 Isolate Unclassified
18 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
19 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
20 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
21 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
22 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
23 2818991437 Pedobacter terrae 518 Isolate Unclassified
24 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
25 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
26 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
27 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
28 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
29 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
30 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
31 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
32 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
33 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
34 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
35 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
36 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
37 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
38 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
39 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
40 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
41 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
42 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
43 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
44 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
45 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
46 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
47 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
48 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
49 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
50 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
51 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
52 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
53 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
54 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
55 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
56 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
57 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
58 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
59 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
60 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
61 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
62 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
63 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
64 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
65 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
66 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
67 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
68 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
69 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
70 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
71 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
74 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
78 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
79 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027617 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
84 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
89 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
92 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
93 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
94 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
95 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
96 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
97 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
100 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
101 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
102 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
103 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
104 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
105 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
106 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
107 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
108 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
109 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
110 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
111 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
112 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
113 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
114 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
115 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
116 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
118 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
119 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
120 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
121 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
122 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
123 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
124 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
125 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
126 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
127 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
128 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
129 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
130 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.03
Metatranscriptomes 0
Isolates 26.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.67
Nodule 2.81
Rhizoplane 1.12
Rhizosphere 62.92
Stem 0
Stem Tuber 0
Unclassified 22.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_255488 2162886007 Bacteria 22786
2 SwRhRL2b_contig_2695858 2162886007 Bacteria 2172
3 JGI25152J39213_1000028 3300002773 Bacteria 100367
4 JGI25150J39212_1000006 3300002774 Bacteria 257228
5 JGI25151J46595_10000024 3300003187 Bacteria 217596
6 JGI25153J46596_10000026 3300003215 Bacteria 217245
7 rootH1_10335800 3300003323 Bacteria 4286
8 Ga0055536_1000002 3300003781 Bacteria 605605
9 Ga0055530_10003780 3300003791 Bacteria 8345
10 Ga0065714_10006506 3300005288 Bacteria 6163
11 Ga0065714_10020645 3300005288 Bacteria 1296
12 Ga0065714_10024410 3300005288 Bacteria 1365
13 Ga0065714_10064672 3300005288 Bacteria 24535
14 Ga0065714_10066031 3300005288 Bacteria 7783
15 Ga0065714_10071240 3300005288 Bacteria 3629
16 Ga0065714_10127884 3300005288 Bacteria 1278
17 Ga0065704_10000218 3300005289 Bacteria 76484
18 Ga0065704_10070687 3300005289 Bacteria 17708
19 Ga0065704_10090709 3300005289 Bacteria 2768
20 Ga0065704_10095270 3300005289 Bacteria 2496
21 Ga0099824_1000685 3300006942 Bacteria 42965
22 Ga0099826_10022016 3300006948 Bacteria 4768
23 Ga0105244_10000046 3300009036 Bacteria 143184
24 Ga0105237_10000311 3300009545 Bacteria 67880
25 Ga0157373_10000016 3300013100 Bacteria 181215
26 Ga0157373_10008182 3300013100 Bacteria 7779
27 Ga0157371_10000367 3300013102 Bacteria 56890
28 Ga0157371_10000991 3300013102 Bacteria 31396
29 Ga0157371_10001608 3300013102 Bacteria 23170
30 Ga0157370_10001290 3300013104 Bacteria 31329
31 Ga0157370_10001854 3300013104 Bacteria 26047
32 Ga0157370_10005785 3300013104 Bacteria 13815
33 Ga0157370_10015673 3300013104 Bacteria 7698
34 Ga0157370_10017405 3300013104 Bacteria 7254
35 Ga0157370_10044812 3300013104 Bacteria 4248
36 Ga0157370_10046200 3300013104 Bacteria 4175
37 Ga0157369_10000158 3300013105 Bacteria 96395
38 Ga0157369_10013182 3300013105 Bacteria 9355
39 Ga0163162_10000011 3300013306 Bacteria 299877
40 Ga0163162_10020874 3300013306 Bacteria 6441
41 Ga0182008_10000025 3300014497 Bacteria 191222
42 Ga0182008_10000046 3300014497 Bacteria 111777
43 Ga0182008_10000459 3300014497 Bacteria 31097
44 Ga0182006_1000139 3300015261 Bacteria 77918
45 Ga0182006_1000289 3300015261 Bacteria 44305
46 Ga0182006_1001252 3300015261 Bacteria 15727
47 Ga0182006_1001599 3300015261 Bacteria 13403
48 Ga0182006_1002192 3300015261 Bacteria 10824
49 Ga0182006_1022269 3300015261 Bacteria 2635
50 Ga0182007_10000008 3300015262 Bacteria 332953
51 Ga0183373_1002 3300015682 Bacteria 990153
52 Ga0163161_10000019 3300017792 Bacteria 216758
53 Ga0163161_10000355 3300017792 Bacteria 38658
54 Ga0163161_10000626 3300017792 Bacteria 28192
55 Ga0163161_10002183 3300017792 Bacteria 14111
56 Ga0163161_10014932 3300017792 Bacteria 5410
57 Ga0163161_10016502 3300017792 Bacteria 5156
58 Ga0163161_10026190 3300017792 Bacteria 4131
59 Ga0207425_1000003 3300025245 Bacteria 1145342
60 Ga0209129_1000022 3300025258 Bacteria 440876
61 Ga0209676_1000022 3300025292 Bacteria 605659
62 Ga0209025_1000007 3300025294 Bacteria 1145109
63 Ga0209758_1000012 3300025297 Bacteria 949866
64 Ga0209050_1000020 3300025298 Bacteria 605671
65 Ga0207655_1000034 3300025728 Bacteria 364737
66 Ga0207671_10000991 3300025914 Bacteria 34985
67 Ga0209281_1000152 3300027111 Bacteria 167233
68 Ga0209489_110720 3300027361 Bacteria 10045
69 Ga0209968_1000387 3300027526 Bacteria 7174
70 Ga0210002_1004297 3300027617 Bacteria 2116
71 Ga0209282_1086242 3300027666 Bacteria 1660
72 Ga0307515_10023073 3300028794 Bacteria 10934
73 Ga0316179_1059078 3300030734 Bacteria 2287
74 Ga0307408_100001690 3300031548 Bacteria 16224
75 Ga0307405_10000001 3300031731 Bacteria 1731270
76 Ga0307405_10000045 3300031731 Bacteria 71537
77 Ga0307413_10001624 3300031824 Bacteria 8707
78 Ga0307410_10006248 3300031852 Bacteria 6412
79 Ga0307406_10000458 3300031901 Bacteria 23690
80 Ga0307406_10001159 3300031901 Bacteria 14742
81 Ga0307407_10000002 3300031903 Bacteria 323084
82 Ga0307407_10014327 3300031903 Bacteria 3878
83 Ga0307412_10000001 3300031911 Bacteria 822691
84 Ga0307412_10158011 3300031911 Bacteria 1681
85 Ga0307416_100000005 3300032002 Bacteria 477728
86 Ga0307414_10000020 3300032004 Bacteria 228673
87 Ga0307414_10000952 3300032004 Bacteria 14793
88 Ga0307414_10043966 3300032004 Bacteria 3046
89 Ga0307414_10082659 3300032004 Bacteria 2355
90 Ga0307411_10000009 3300032005 Bacteria 319906
91 Ga0307510_10038804 3300033180 Bacteria 5259
92 Ga0439447_001072 3300041407 Bacteria 9918
93 Ga0439466_0000082 3300041411 Bacteria 36552
94 Ga0451807_1595649 3300041486 Bacteria 1972
95 Ga0451576_0392175 3300045051 Bacteria 1455
96 Ga0495627_010618 3300046453 Bacteria 3339
97 Ga0495607_0016534 3300046501 Bacteria 4759
98 Ga0495606_0012734 3300046507 Bacteria 6706
99 Ga0495606_0022160 3300046507 Bacteria 4637
100 Ga0495610_0000084 3300046512 Bacteria 112459
101 Ga0495610_0001362 3300046512 Bacteria 21702
102 Ga0495616_0018809 3300046513 Bacteria 3782
103 Ga0495637_0003742 3300046520 Bacteria 8034
104 Ga0495643_0000343 3300046522 Bacteria 63284
105 Ga0495654_0105444 3300046530 Bacteria 1292
106 Ga0496115_0017724 3300048918 Bacteria 5451
107 Ga0496116_0000075 3300048919 Bacteria 231674
108 Ga0496117_0046936 3300048920 Bacteria 3103
109 Ga0496121_0019909 3300048924 Bacteria 6678
110 Ga0496122_0000783 3300048925 Bacteria 61156
111 Ga0496123_0002343 3300048926 Bacteria 23754
112 Ga0496124_0207099 3300048927 Bacteria 1487
113 Ga0496125_0000024 3300048928 Bacteria 442149
114 Ga0496125_0000070 3300048928 Bacteria 245793
115 Ga0496126_0007524 3300048929 Bacteria 11927
116 Ga0496126_0136304 3300048929 Bacteria 2117
117 Ga0501036_0088729 3300049572 Bacteria 2613
118 Ga0501238_000027 3300049671 Bacteria 26617
119 Ga0501249_000007 3300049679 Bacteria 198318
120 Ga0501249_003790 3300049679 Bacteria 3052
121 Ga0501266_000013 3300049763 Bacteria 183849
122 Ga0501280_000762 3300049776 Bacteria 7040
123 Ga0501035_0002029 3300049822 Bacteria 20182
124 Ga0500646_0009921 3300053090 Bacteria 2438
125 Ga0500651_0000951 3300053093 Bacteria 14237
126 Ga0500641_0000012 3300053096 Bacteria 164908
127 Ga0500641_0000103 3300053096 Bacteria 32996
128 Ga0500641_0000227 3300053096 Bacteria 21133
129 Ga0500658_0000005 3300053134 Bacteria 369268
130 Ga0500584_016919 3300053726 Bacteria 3365

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053093 Ga0500651_0000951 Ga0500651_0000951_21_1028 335
2 iso_pu_bacteria 2513020052 2513233650 364
3 iso_pu_bacteria 2519899754 2520880085 364
4 iso_pu_bacteria 2643221600 2644012729 364
5 iso_pu_bacteria 2643221667 2644370474 364
6 iso_pu_bacteria 2643221716 2644641802 364
7 iso_pu_bacteria 2738541279 2738735512 364
8 iso_pu_bacteria 2738541285 2738768089 364
9 iso_pu_bacteria 2738543007 2739217094 364
10 iso_pu_bacteria 2739367857 2740003738 364
11 iso_pu_bacteria 2739367858 2740008555 364
12 iso_pu_bacteria 2802428842 2802655037 364
13 iso_pu_bacteria 2816332280 2817413763 364
14 iso_pu_bacteria 2857613821 2857616499 364
15 iso_pu_bacteria 2857618242 2857622406 364
16 iso_pu_bacteria 2881247448 2881250436 364
17 iso_pu_bacteria 2903895155 2903899207 364
18 iso_pu_bacteria 2904419702 2904421654 364
19 iso_pu_bacteria 2904555929 2904557374 364
20 iso_pu_bacteria 2919191525 2919194744 364
21 iso_pu_bacteria 2919683626 2919685294 364
22 iso_pu_bacteria 2929150217 2929150894 364
23 iso_pu_bacteria 2965320100 2965322561 364
24 iso_pu_bacteria 8055592153 8055597214 364
25 iso_pu_bacteria 8056440228 8056440745 364
26 iso_pu_bacteria 2881359912 2881361052 365
27 iso_pu_bacteria 2919509842 2919512634 365
28 iso_pu_bacteria 8055419101 8055420544 365
29 3300013104 Ga0157370_10001290 Ga0157370_1000129016 367
30 3300013306 Ga0163162_10020874 Ga0163162_100208743 367
31 3300053096 Ga0500641_0000103 Ga0500641_0000103_27449_28558 367
32 3300005288 Ga0065714_10020645 Ga0065714_100206451 368
33 3300005288 Ga0065714_10024410 Ga0065714_100244101 368
34 3300005288 Ga0065714_10127884 Ga0065714_101278841 368
35 3300006942 Ga0099824_1000685 Ga0099824_100068542 368
36 3300006948 Ga0099826_10022016 Ga0099826_100220166 368
37 3300009036 Ga0105244_10000046 Ga0105244_1000004685 368
38 3300013100 Ga0157373_10000016 Ga0157373_10000016149 368
39 3300013104 Ga0157370_10001854 Ga0157370_1000185410 368
40 3300013104 Ga0157370_10005785 Ga0157370_100057858 368
41 3300013104 Ga0157370_10046200 Ga0157370_100462003 368
42 3300013105 Ga0157369_10013182 Ga0157369_100131825 368
43 3300015261 Ga0182006_1001599 Ga0182006_100159914 368
44 3300017792 Ga0163161_10000019 Ga0163161_10000019170 368
45 3300017792 Ga0163161_10016502 Ga0163161_100165024 368
46 3300025728 Ga0207655_1000034 Ga0207655_1000034180 368
47 3300027361 Ga0209489_110720 Ga0209489_1107202 368
48 3300027526 Ga0209968_1000387 Ga0209968_10003874 368
49 3300027617 Ga0210002_1004297 Ga0210002_10042972 368
50 3300027666 Ga0209282_1086242 Ga0209282_10862422 368
51 3300030734 Ga0316179_1059078 Ga0316179_10590781 368
52 3300031548 Ga0307408_100001690 Ga0307408_1000016903 368
53 3300031852 Ga0307410_10006248 Ga0307410_100062482 368
54 3300031901 Ga0307406_10000458 Ga0307406_100004584 368
55 3300031903 Ga0307407_10014327 Ga0307407_100143272 368
56 3300032004 Ga0307414_10000020 Ga0307414_10000020172 368
57 3300033180 Ga0307510_10038804 Ga0307510_100388045 368
58 3300041407 Ga0439447_001072 Ga0439447_001072_8453_9565 368
59 3300041411 Ga0439466_0000082 Ga0439466_0000082_19833_20945 368
60 3300046453 Ga0495627_010618 Ga0495627_010618_757_1869 368
61 3300046501 Ga0495607_0016534 Ga0495607_0016534_2304_3416 368
62 3300046507 Ga0495606_0012734 Ga0495606_0012734_5407_6519 368
63 3300046513 Ga0495616_0018809 Ga0495616_0018809_2269_3381 368
64 3300046522 Ga0495643_0000343 Ga0495643_0000343_27208_28320 368
65 3300046530 Ga0495654_0105444 Ga0495654_0105444_90_1202 368
66 3300048918 Ga0496115_0017724 Ga0496115_0017724_356_1468 368
67 3300048919 Ga0496116_0000075 Ga0496116_0000075_26765_27877 368
68 3300048920 Ga0496117_0046936 Ga0496117_0046936_237_1349 368
69 3300048927 Ga0496124_0207099 Ga0496124_0207099_359_1471 368
70 3300048928 Ga0496125_0000024 Ga0496125_0000024_252506_253618 368
71 3300048928 Ga0496125_0000070 Ga0496125_0000070_48259_49371 368
72 3300048929 Ga0496126_0007524 Ga0496126_0007524_5343_6455 368
73 3300048929 Ga0496126_0136304 Ga0496126_0136304_130_1242 368
74 3300049671 Ga0501238_000027 Ga0501238_000027_22676_23788 368
75 3300049679 Ga0501249_000007 Ga0501249_000007_96138_97250 368
76 3300049776 Ga0501280_000762 Ga0501280_000762_2512_3624 368
77 3300053090 Ga0500646_0009921 Ga0500646_0009921_228_1340 368
78 3300053096 Ga0500641_0000012 Ga0500641_0000012_19644_20756 368
79 3300053096 Ga0500641_0000227 Ga0500641_0000227_9482_10594 368
80 3300053726 Ga0500584_016919 Ga0500584_016919_490_1602 368
81 iso_pu_bacteria 2958512119 2958513558 368
82 3300048924 Ga0496121_0019909 Ga0496121_0019909_2123_3238 369
83 3300031824 Ga0307413_10001624 Ga0307413_100016248 370
84 3300032005 Ga0307411_10000009 Ga0307411_10000009157 370
85 3300045051 Ga0451576_0392175 Ga0451576_0392175_101_1222 370
86 3300049679 Ga0501249_003790 Ga0501249_003790_226_1398 370
87 3300049763 Ga0501266_000013 Ga0501266_000013_135176_136348 370
88 3300053134 Ga0500658_0000005 Ga0500658_0000005_145542_146741 370
89 iso_pu_bacteria 2643221725 2644682083 370
90 iso_pu_bacteria 2958458903 2958460538 370
91 iso_pu_bacteria 2977268062 2977272275 370
92 iso_pu_bacteria 8054307821 8054307969 370
93 3300005289 Ga0065704_10090709 Ga0065704_100907092 371
94 3300027111 Ga0209281_1000152 Ga0209281_1000152133 371
95 3300049572 Ga0501036_0088729 Ga0501036_0088729_1318_2469 371
96 3300049822 Ga0501035_0002029 Ga0501035_0002029_9539_10690 371
97 2162886007 SwRhRL2b_contig_2695858 SwRhRL2b_0198.00007070 372
98 3300005289 Ga0065704_10070687 Ga0065704_1007068712 372
99 3300031731 Ga0307405_10000001 Ga0307405_10000001390 372
100 3300031901 Ga0307406_10001159 Ga0307406_100011592 372
101 iso_pu_bacteria 2739367656 2739615011 373
102 iso_pu_bacteria 2739367663 2739645867 373
103 iso_pu_bacteria 2833640130 2833641768 373
104 iso_pu_bacteria 2585427687 2586207166 374
105 iso_pu_bacteria 2738541302 2738852749 374
106 iso_pu_bacteria 2739367651 2739586672 374
107 iso_pu_bacteria 2818991437 2819547111 374
108 iso_pu_bacteria 2842722452 2842727140 374
109 iso_pu_bacteria 2842909656 2842910857 374
110 iso_pu_bacteria 2849281842 2849284069 374
111 iso_pu_bacteria 2904445276 2904449739 374
112 iso_pu_bacteria 2945997725 2945998040 374
113 iso_pu_bacteria 2954016120 2954020500 374
114 iso_pu_bacteria 2738541283 2738755777 375
115 iso_pu_bacteria 2738541284 2738761557 375
116 iso_pu_bacteria 2775506987 2776615807 375
117 3300017792 Ga0163161_10014932 Ga0163161_100149323 377
118 3300017792 Ga0163161_10026190 Ga0163161_100261904 377
119 3300032004 Ga0307414_10000952 Ga0307414_100009529 377
120 3300002773 JGI25152J39213_1000028 JGI25152J39213_100002883 378
121 3300002774 JGI25150J39212_1000006 JGI25150J39212_1000006108 378
122 3300003187 JGI25151J46595_10000024 JGI25151J46595_1000002483 378
123 3300003215 JGI25153J46596_10000026 JGI25153J46596_10000026109 378
124 3300003781 Ga0055536_1000002 Ga0055536_1000002202 378
125 3300003791 Ga0055530_10003780 Ga0055530_100037804 378
126 3300005288 Ga0065714_10064672 Ga0065714_1006467219 378
127 3300013102 Ga0157371_10000367 Ga0157371_1000036719 378
128 3300013104 Ga0157370_10015673 Ga0157370_100156738 378
129 3300013104 Ga0157370_10017405 Ga0157370_100174052 378
130 3300013104 Ga0157370_10044812 Ga0157370_100448122 378
131 3300013105 Ga0157369_10000158 Ga0157369_100001586 378
132 3300013306 Ga0163162_10000011 Ga0163162_10000011107 378
133 3300014497 Ga0182008_10000046 Ga0182008_1000004616 378
134 3300015261 Ga0182006_1000139 Ga0182006_100013918 378
135 3300015261 Ga0182006_1000289 Ga0182006_100028913 378
136 3300015261 Ga0182006_1022269 Ga0182006_10222693 378
137 3300015262 Ga0182007_10000008 Ga0182007_1000000884 378
138 3300015682 Ga0183373_1002 Ga0183373_1002353 378
139 3300017792 Ga0163161_10000355 Ga0163161_1000035527 378
140 3300017792 Ga0163161_10000626 Ga0163161_100006266 378
141 3300025245 Ga0207425_1000003 Ga0207425_1000003107 378
142 3300025258 Ga0209129_1000022 Ga0209129_1000022106 378
143 3300025292 Ga0209676_1000022 Ga0209676_1000022338 378
144 3300025294 Ga0209025_1000007 Ga0209025_1000007106 378
145 3300025297 Ga0209758_1000012 Ga0209758_1000012107 378
146 3300025298 Ga0209050_1000020 Ga0209050_1000020201 378
147 3300031731 Ga0307405_10000045 Ga0307405_100000453 378
148 3300031903 Ga0307407_10000002 Ga0307407_10000002166 378
149 3300032002 Ga0307416_100000005 Ga0307416_100000005168 378
150 3300032004 Ga0307414_10043966 Ga0307414_100439662 378
151 3300041486 Ga0451807_1595649 Ga0451807_1595649_170_1306 378
152 3300046507 Ga0495606_0022160 Ga0495606_0022160_887_2023 378
153 3300046512 Ga0495610_0000084 Ga0495610_0000084_92567_93706 378
154 3300046512 Ga0495610_0001362 Ga0495610_0001362_18386_19522 378
155 3300046520 Ga0495637_0003742 Ga0495637_0003742_2261_3397 378
156 2162886007 SwRhRL2b_contig_255488 SwRhRL2b_0836.00007510 379
157 3300003323 rootH1_10335800 rootH1_103358003 379
158 3300005288 Ga0065714_10006506 Ga0065714_100065063 379
159 3300005288 Ga0065714_10066031 Ga0065714_100660315 379
160 3300005288 Ga0065714_10071240 Ga0065714_100712402 379
161 3300005289 Ga0065704_10000218 Ga0065704_1000021863 379
162 3300005289 Ga0065704_10095270 Ga0065704_100952701 379
163 3300009545 Ga0105237_10000311 Ga0105237_1000031126 379
164 3300013100 Ga0157373_10008182 Ga0157373_100081823 379
165 3300013102 Ga0157371_10000991 Ga0157371_1000099116 379
166 3300013102 Ga0157371_10001608 Ga0157371_1000160812 379
167 3300014497 Ga0182008_10000025 Ga0182008_1000002530 379
168 3300014497 Ga0182008_10000459 Ga0182008_100004599 379
169 3300015261 Ga0182006_1001252 Ga0182006_10012529 379
170 3300015261 Ga0182006_1002192 Ga0182006_10021927 379
171 3300017792 Ga0163161_10002183 Ga0163161_100021836 379
172 3300025914 Ga0207671_10000991 Ga0207671_1000099113 379
173 3300028794 Ga0307515_10023073 Ga0307515_1002307310 379
174 3300031911 Ga0307412_10000001 Ga0307412_10000001542 379
175 3300031911 Ga0307412_10158011 Ga0307412_101580111 379
176 3300032004 Ga0307414_10082659 Ga0307414_100826592 379
177 3300048925 Ga0496122_0000783 Ga0496122_0000783_19569_20708 379
178 3300048926 Ga0496123_0002343 Ga0496123_0002343_6604_7743 379

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01266

DAO

FAD dependent oxidoreductase

73

426

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
4zn0-assembly2.cif.gz_D structure of the nadph-dependent thioredoxin reductase from methanosarcina mazei 0.9387 16 232
3dzb-assembly1.cif.gz_B crystal structure of prephenate dehydrogenase from streptococcus thermophilus 0.9384 17 50
3dzb-assembly1.cif.gz_A crystal structure of prephenate dehydrogenase from streptococcus thermophilus 0.9357 17 50
3vpg-assembly1.cif.gz_D l-lactate dehydrogenase from thermus caldophilus gk24 0.9278 17 46
2v6m-assembly1.cif.gz_B crystal structure of lactate dehydrogenase from thermus thermophilus hb8 (apo form) 0.9259 17 46
ID Description Score Start End Superfamily
3iwaA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9738 17 48 3.50.50.60
3c4aA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.954 17 49 3.50.50.60
3dzbA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9357 17 50 3.40.50.720
5er0C01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9265 16 48 3.50.50.60
1e1nA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9243 16 52 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A519VP68-F1-model_v4 FAD-binding oxidoreductase 0.9939 69 379 GO:0005737
AF-A0A519VP68-F1-model_v4 FAD-binding oxidoreductase 0.9876 69 379 GO:0005737
AF-A0A1S2VKK8-F1-model_v4 FAD-dependent oxidoreductase 0.9772 4 377 GO:0005737
AF-A0A2G6PR36-F1-model_v4 FAD-dependent oxidoreductase 0.9766 4 378 GO:0005737
AF-A0A3C0RDG8-F1-model_v4 FAD dependent oxidoreductase domain-containing protein 0.9764 178 379 GO:0005737

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pLDDT pTM Quality
91.49 0.9 High
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Predicted Structure (AlphaFold2)

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