F271855

General Info

Members Datasets Scaffolds Average Seq Length
178 139 178 212

Family's Representative Sequence

Representative Sequence 3300006881|Ga0068865_100000056|Ga0068865_10000005656
Length 243
Sequence LIDPTGKLPGLSLNQSLNLAVSRSVATAGDDPRVAREQALKRREENEIEFGRIVAFSDGVFSIAITLLVLNLTVSKGLSTADLTNELFDLWDNLLAFAISFAVIGRFWVVHHRFFAEVDAFDGRLLALNLVYLASIVLIPFGSEVLGEYGGETPAVVLYSVNLAAVVLIGLWMGIDARRRGLTSIDDETHRETRIRSTYIAAIFMLSIPLAFVAPRAAGYLWFLLFLDPSRRLARRSTSAPGP

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
26 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
27 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
28 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
48 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
75 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
76 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
77 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
78 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
79 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
80 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
81 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
82 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
83 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
84 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
85 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
86 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
87 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
88 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
89 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
90 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
91 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
92 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
93 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
94 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
95 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
96 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
97 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
98 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
99 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
100 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
101 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
102 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
103 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
104 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
105 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
106 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
107 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
108 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
109 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
110 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
111 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
112 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
113 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
114 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
115 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
116 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
117 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
118 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
119 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
122 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
123 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
124 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
125 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
126 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
127 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
128 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
129 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
130 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
131 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
132 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
133 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
136 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
137 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
138 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
139 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.56
Nodule 0
Rhizoplane 14.61
Rhizosphere 82.02
Stem 0
Stem Tuber 0
Unclassified 2.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100365134 3300005329 Bacteria 1375
2 Ga0070690_100225440 3300005330 Bacteria 1315
3 Ga0070682_100000086 3300005337 Bacteria 83703
4 Ga0068868_100064436 3300005338 Bacteria 2909
5 Ga0070660_100244185 3300005339 Bacteria 1463
6 Ga0070661_100220691 3300005344 Bacteria 1454
7 Ga0070692_10013926 3300005345 Bacteria 3761
8 Ga0070668_100019130 3300005347 Bacteria 5150
9 Ga0070688_100000613 3300005365 Bacteria 17847
10 Ga0070688_100000727 3300005365 Bacteria 16223
11 Ga0070659_100004968 3300005366 Bacteria 9517
12 Ga0070713_100000080 3300005436 Bacteria 60198
13 Ga0070711_100052978 3300005439 Bacteria 2795
14 Ga0070663_100367115 3300005455 Bacteria 1169
15 Ga0070678_100029568 3300005456 Bacteria 3754
16 Ga0070685_10000893 3300005466 Bacteria 16028
17 Ga0070685_10000996 3300005466 Bacteria 15219
18 Ga0070684_100102216 3300005535 Bacteria 2562
19 Ga0068853_100210113 3300005539 Bacteria 1774
20 Ga0068853_100291395 3300005539 Bacteria 1507
21 Ga0070672_100000003 3300005543 Bacteria 159532
22 Ga0070665_100005579 3300005548 Bacteria 12939
23 Ga0070665_100101127 3300005548 Bacteria 2887
24 Ga0068855_100093882 3300005563 Bacteria 3460
25 Ga0070664_100007089 3300005564 Bacteria 9043
26 Ga0068854_100000091 3300005578 Bacteria 63568
27 Ga0068856_100000146 3300005614 Bacteria 71991
28 Ga0068852_100000035 3300005616 Bacteria 99721
29 Ga0068851_10002302 3300005834 Bacteria 8399
30 Ga0068851_10108021 3300005834 Bacteria 1483
31 Ga0068863_100014134 3300005841 Bacteria 7690
32 Ga0068858_100000088 3300005842 Bacteria 95138
33 Ga0081540_1053301 3300005983 Bacteria 1984
34 Ga0068865_100000056 3300006881 Bacteria 62122
35 Ga0105245_10000319 3300009098 Bacteria 45611
36 Ga0105245_10000683 3300009098 Bacteria 30631
37 Ga0105245_10008318 3300009098 Bacteria 9068
38 Ga0105247_10019388 3300009101 Bacteria 4083
39 Ga0105241_10485287 3300009174 Bacteria 1099
40 Ga0105242_10031326 3300009176 Bacteria 4246
41 Ga0105248_10000210 3300009177 Bacteria 67204
42 Ga0105248_10094325 3300009177 Bacteria 3370
43 Ga0105249_10000629 3300009553 Bacteria 32124
44 Ga0105239_10042096 3300010375 Bacteria 5005
45 Ga0105239_10204506 3300010375 Bacteria 2212
46 Ga0157373_10734006 3300013100 Unclassified 725
47 Ga0157370_10018265 3300013104 Bacteria 7053
48 Ga0157369_10000348 3300013105 Bacteria 61516
49 Ga0157374_10062720 3300013296 Bacteria 3485
50 Ga0157378_10001651 3300013297 Bacteria 20170
51 Ga0157372_10000435 3300013307 Bacteria 45997
52 Ga0157375_11038632 3300013308 Bacteria 958
53 Ga0157380_10000092 3300014326 Bacteria 48994
54 Ga0157380_10404173 3300014326 Bacteria 1297
55 Ga0157379_10007138 3300014968 Bacteria 9660
56 Ga0157376_10007684 3300014969 Bacteria 7723
57 Ga0163161_10006843 3300017792 Bacteria 7889
58 Ga0207656_10000136 3300025321 Bacteria 27533
59 Ga0207656_10098740 3300025321 Bacteria 1336
60 Ga0207710_10012957 3300025900 Bacteria 3512
61 Ga0207654_10297577 3300025911 Bacteria 1096
62 Ga0207663_10133884 3300025916 Bacteria 1717
63 Ga0207657_10383558 3300025919 Bacteria 1106
64 Ga0207687_10000027 3300025927 Bacteria 168505
65 Ga0207687_10000037 3300025927 Bacteria 120493
66 Ga0207687_10001737 3300025927 Bacteria 15006
67 Ga0207700_10000013 3300025928 Bacteria 230462
68 Ga0207690_10004144 3300025932 Bacteria 8569
69 Ga0207686_10038706 3300025934 Bacteria 2888
70 Ga0207704_10000092 3300025938 Bacteria 52383
71 Ga0207691_10000005 3300025940 Bacteria 163117
72 Ga0207711_10000165 3300025941 Bacteria 70923
73 Ga0207711_10054458 3300025941 Bacteria 3433
74 Ga0207689_10440741 3300025942 Bacteria 1088
75 Ga0207661_10318628 3300025944 Bacteria 1397
76 Ga0207667_10248931 3300025949 Bacteria 1818
77 Ga0207712_10000033 3300025961 Bacteria 209336
78 Ga0207668_10008314 3300025972 Bacteria 6181
79 Ga0207668_10414171 3300025972 Bacteria 1142
80 Ga0207640_10000140 3300025981 Bacteria 53451
81 Ga0207677_10408802 3300026023 Bacteria 1153
82 Ga0207703_10000725 3300026035 Bacteria 32432
83 Ga0207639_10054843 3300026041 Bacteria 3048
84 Ga0207639_10094710 3300026041 Bacteria 2398
85 Ga0207702_10003190 3300026078 Bacteria 15161
86 Ga0207702_10186400 3300026078 Bacteria 1914
87 Ga0207641_10006016 3300026088 Bacteria 10286
88 Ga0207683_10180746 3300026121 Bacteria 1912
89 Ga0207698_10000014 3300026142 Bacteria 240703
90 Ga0207698_10324043 3300026142 Bacteria 1444
91 Ga0268266_10006057 3300028379 Bacteria 11146
92 Ga0268266_10068675 3300028379 Bacteria 3069
93 Ga0265337_1000177 3300028556 Bacteria 33520
94 Ga0265326_10000038 3300028558 Bacteria 88362
95 Ga0265322_10000006 3300028654 Bacteria 231685
96 Ga0265336_10007152 3300028666 Bacteria 3985
97 Ga0265324_10000681 3300029957 Bacteria 22833
98 Ga0265328_10001936 3300031239 Bacteria 9416
99 Ga0265320_10000001 3300031240 Bacteria 847191
100 Ga0265340_10116885 3300031247 Bacteria 1229
101 Ga0265339_10025387 3300031249 Bacteria 3400
102 Ga0265331_10000612 3300031250 Bacteria 31246
103 Ga0265327_10000003 3300031251 Bacteria 852750
104 Ga0265316_10207964 3300031344 Bacteria 1448
105 Ga0265313_10057214 3300031595 Bacteria 1841
106 Ga0265314_10000103 3300031711 Bacteria 127956
107 Ga0265342_10155673 3300031712 Bacteria 1266
108 Ga0307415_100002532 3300032126 Bacteria 9137
109 Ga0373937_0206273 3300036401 Bacteria 1848
110 Ga0451807_0012900 3300041486 Bacteria 1373
111 Ga0451849_0213454 3300041505 Unclassified 749
112 Ga0451853_3379453 3300041512 Bacteria 790
113 Ga0466963_0000035 3300044694 Bacteria 44364
114 Ga0466963_0017658 3300044694 Bacteria 4449
115 Ga0466957_0048891 3300044842 Bacteria 2570
116 Ga0466967_0000003 3300045976 Bacteria 169144
117 Ga0466967_0023487 3300045976 Bacteria 5054
118 Ga0495629_0000091 3300046459 Bacteria 78697
119 Ga0495641_0024920 3300046461 Bacteria 2943
120 Ga0495606_0001247 3300046507 Bacteria 35545
121 Ga0495608_0000079 3300046511 Bacteria 71469
122 Ga0495628_0042193 3300046516 Bacteria 3640
123 Ga0495628_0069148 3300046516 Bacteria 2754
124 Ga0495630_0000053 3300046517 Bacteria 93065
125 Ga0495634_0559976 3300046642 Bacteria 666
126 Ga0495588_0000554 3300046674 Bacteria 17944
127 Ga0495657_0000070 3300046675 Bacteria 92382
128 Ga0495647_0000181 3300046681 Bacteria 16580
129 Ga0495647_0000188 3300046681 Bacteria 16321
130 Ga0495658_0003411 3300046683 Bacteria 7865
131 Ga0495669_0000514 3300046684 Bacteria 17635
132 Ga0495613_0000654 3300046689 Bacteria 27451
133 Ga0495624_0000259 3300046690 Bacteria 41997
134 Ga0495600_0012440 3300046809 Bacteria 5322
135 Ga0495604_0000460 3300047317 Bacteria 36155
136 Ga0495674_0048988 3300047319 Bacteria 3736
137 Ga0495672_0088844 3300047320 Bacteria 1702
138 Ga0495676_0078477 3300047321 Bacteria 2514
139 Ga0495675_0000141 3300047444 Bacteria 50168
140 Ga0495593_0300339 3300047673 Bacteria 802
141 Ga0496100_0000003 3300048903 Bacteria 360802
142 Ga0496101_0000003 3300048904 Bacteria 406565
143 Ga0496101_0000087 3300048904 Bacteria 101601
144 Ga0496104_0000234 3300048907 Bacteria 48908
145 Ga0496104_0000375 3300048907 Bacteria 39569
146 Ga0496104_0121422 3300048907 Bacteria 2508
147 Ga0496105_0000205 3300048908 Bacteria 39569
148 Ga0496105_0000351 3300048908 Bacteria 30325
149 Ga0496106_0000068 3300048909 Bacteria 83053
150 Ga0496106_0000146 3300048909 Bacteria 52294
151 Ga0496107_0000018 3300048910 Bacteria 158433
152 Ga0496107_0000026 3300048910 Bacteria 108989
153 Ga0496108_0000025 3300048911 Bacteria 177919
154 Ga0496109_0000081 3300048912 Bacteria 99723
155 Ga0496109_0122911 3300048912 Bacteria 2419
156 Ga0496110_0000003 3300048913 Bacteria 144124
157 Ga0496110_0271363 3300048913 Bacteria 1544
158 Ga0496111_0000024 3300048914 Bacteria 62369
159 Ga0496111_0139929 3300048914 Bacteria 1793
160 Ga0496112_0031276 3300048915 Bacteria 5161
161 Ga0496113_0000156 3300048916 Bacteria 30011
162 Ga0496113_0033936 3300048916 Bacteria 3720
163 Ga0496113_0425091 3300048916 Bacteria 1067
164 Ga0496114_0148740 3300048917 Bacteria 2031
165 Ga0496114_0240472 3300048917 Unclassified 1592
166 Ga0496124_0097932 3300048927 Bacteria 2381
167 Ga0496126_0018115 3300048929 Bacteria 6993
168 Ga0496126_0332961 3300048929 Unclassified 1245
169 Ga0501079_0432690 3300049741 Bacteria 1033
170 nmdc:mga0n895_395414_c1 3300050512 Bacteria 1398
171 Ga0495601_0000096 3300053077 Bacteria 48420
172 Ga0495601_0003258 3300053077 Bacteria 9275
173 Ga0495601_0008960 3300053077 Bacteria 5907
174 Ga0495612_0000979 3300053078 Bacteria 11754
175 Ga0495595_0000004 3300053084 Bacteria 260821
176 Ga0495619_0000173 3300053085 Bacteria 47525
177 Ga0495619_0000207 3300053085 Bacteria 42705
178 Ga0500628_000022 3300053129 Bacteria 77990

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025942 Ga0207689_10440741 Ga0207689_104407412 196
2 3300009098 Ga0105245_10008318 Ga0105245_100083188 197
3 3300013307 Ga0157372_10000435 Ga0157372_1000043528 197
4 3300009174 Ga0105241_10485287 Ga0105241_104852872 198
5 3300025911 Ga0207654_10297577 Ga0207654_102975773 198
6 3300048913 Ga0496110_0000003 Ga0496110_0000003_20999_21604 200
7 3300048914 Ga0496111_0000024 Ga0496111_0000024_20984_21589 200
8 3300044694 Ga0466963_0017658 Ga0466963_0017658_1885_2535 201
9 3300045976 Ga0466967_0000003 Ga0466967_0000003_104059_104691 201
10 3300005337 Ga0070682_100000086 Ga0070682_10000008663 203
11 3300005345 Ga0070692_10013926 Ga0070692_100139263 203
12 3300005439 Ga0070711_100052978 Ga0070711_1000529783 203
13 3300005578 Ga0068854_100000091 Ga0068854_10000009129 203
14 3300005834 Ga0068851_10002302 Ga0068851_1000230210 203
15 3300010375 Ga0105239_10204506 Ga0105239_102045063 203
16 3300013100 Ga0157373_10734006 Ga0157373_107340061 203
17 3300025321 Ga0207656_10000136 Ga0207656_1000013628 203
18 3300025916 Ga0207663_10133884 Ga0207663_101338843 203
19 3300025927 Ga0207687_10001737 Ga0207687_100017375 203
20 3300025981 Ga0207640_10000140 Ga0207640_1000014028 203
21 3300045976 Ga0466967_0023487 Ga0466967_0023487_1482_2108 203
22 3300053085 Ga0495619_0000207 Ga0495619_0000207_24611_25225 203
23 3300005539 Ga0068853_100291395 Ga0068853_1002913953 204
24 3300025928 Ga0207700_10000013 Ga0207700_10000013182 204
25 3300026041 Ga0207639_10054843 Ga0207639_100548433 204
26 3300028556 Ga0265337_1000177 Ga0265337_100017722 204
27 3300028558 Ga0265326_10000038 Ga0265326_1000003876 204
28 3300028654 Ga0265322_10000006 Ga0265322_10000006208 204
29 3300028666 Ga0265336_10007152 Ga0265336_100071525 204
30 3300029957 Ga0265324_10000681 Ga0265324_1000068122 204
31 3300031239 Ga0265328_10001936 Ga0265328_100019367 204
32 3300031240 Ga0265320_10000001 Ga0265320_10000001677 204
33 3300031247 Ga0265340_10116885 Ga0265340_101168852 204
34 3300031249 Ga0265339_10025387 Ga0265339_100253873 204
35 3300031250 Ga0265331_10000612 Ga0265331_1000061220 204
36 3300031251 Ga0265327_10000003 Ga0265327_10000003677 204
37 3300031344 Ga0265316_10207964 Ga0265316_102079642 204
38 3300031595 Ga0265313_10057214 Ga0265313_100572142 204
39 3300031711 Ga0265314_10000103 Ga0265314_1000010322 204
40 3300031712 Ga0265342_10155673 Ga0265342_101556732 204
41 3300041505 Ga0451849_0213454 Ga0451849_0213454_100_717 204
42 3300046683 Ga0495658_0003411 Ga0495658_0003411_3635_4252 204
43 3300046809 Ga0495600_0012440 Ga0495600_0012440_568_1185 204
44 3300048907 Ga0496104_0000234 Ga0496104_0000234_39081_39698 204
45 3300048908 Ga0496105_0000351 Ga0496105_0000351_3025_3642 204
46 3300048911 Ga0496108_0000025 Ga0496108_0000025_169407_170024 204
47 3300048912 Ga0496109_0000081 Ga0496109_0000081_55478_56095 204
48 3300048912 Ga0496109_0122911 Ga0496109_0122911_826_1443 204
49 3300053077 Ga0495601_0003258 Ga0495601_0003258_2011_2691 204
50 3300005841 Ga0068863_100014134 Ga0068863_1000141343 205
51 3300005983 Ga0081540_1053301 Ga0081540_10533012 205
52 3300009176 Ga0105242_10031326 Ga0105242_100313265 205
53 3300025934 Ga0207686_10038706 Ga0207686_100387063 205
54 3300026088 Ga0207641_10006016 Ga0207641_100060169 205
55 3300036401 Ga0373937_0206273 Ga0373937_0206273_879_1499 205
56 3300046516 Ga0495628_0042193 Ga0495628_0042193_78_707 205
57 3300046642 Ga0495634_0559976 Ga0495634_0559976_35_655 205
58 3300046689 Ga0495613_0000654 Ga0495613_0000654_18067_18687 205
59 3300047319 Ga0495674_0048988 Ga0495674_0048988_1506_2135 205
60 3300053077 Ga0495601_0008960 Ga0495601_0008960_410_1039 205
61 3300053078 Ga0495612_0000979 Ga0495612_0000979_5478_6107 205
62 3300005842 Ga0068858_100000088 Ga0068858_1000000884 206
63 3300009098 Ga0105245_10000683 Ga0105245_1000068322 206
64 3300009553 Ga0105249_10000629 Ga0105249_1000062918 206
65 3300013296 Ga0157374_10062720 Ga0157374_100627205 206
66 3300014968 Ga0157379_10007138 Ga0157379_100071389 206
67 3300025927 Ga0207687_10000037 Ga0207687_10000037100 206
68 3300025961 Ga0207712_10000033 Ga0207712_10000033187 206
69 3300026035 Ga0207703_10000725 Ga0207703_100007254 206
70 3300044694 Ga0466963_0000035 Ga0466963_0000035_16038_16709 206
71 3300046681 Ga0495647_0000181 Ga0495647_0000181_15859_16482 206
72 3300046684 Ga0495669_0000514 Ga0495669_0000514_16103_16732 206
73 3300048903 Ga0496100_0000003 Ga0496100_0000003_23174_23803 206
74 3300048904 Ga0496101_0000003 Ga0496101_0000003_23174_23803 206
75 3300048904 Ga0496101_0000087 Ga0496101_0000087_64913_65578 206
76 3300048907 Ga0496104_0000375 Ga0496104_0000375_13596_14225 206
77 3300048908 Ga0496105_0000205 Ga0496105_0000205_25345_25974 206
78 3300048909 Ga0496106_0000068 Ga0496106_0000068_17914_18579 206
79 3300048909 Ga0496106_0000146 Ga0496106_0000146_23164_23793 206
80 3300048910 Ga0496107_0000018 Ga0496107_0000018_111523_112188 206
81 3300048910 Ga0496107_0000026 Ga0496107_0000026_23174_23803 206
82 3300048916 Ga0496113_0425091 Ga0496113_0425091_213_878 206
83 3300050512 nmdc:mga0n895_395414_c1 nmdc:mga0n895_395414_c1_43_681 206
84 3300013104 Ga0157370_10018265 Ga0157370_100182656 207
85 3300017792 Ga0163161_10006843 Ga0163161_100068433 207
86 3300041486 Ga0451807_0012900 Ga0451807_0012900_634_1260 207
87 3300049741 Ga0501079_0432690 Ga0501079_0432690_291_989 207
88 3300005339 Ga0070660_100244185 Ga0070660_1002441853 209
89 3300005365 Ga0070688_100000613 Ga0070688_1000006138 209
90 3300005366 Ga0070659_100004968 Ga0070659_1000049685 209
91 3300005436 Ga0070713_100000080 Ga0070713_10000008038 209
92 3300005466 Ga0070685_10000893 Ga0070685_1000089311 209
93 3300005539 Ga0068853_100210113 Ga0068853_1002101132 209
94 3300005548 Ga0070665_100101127 Ga0070665_1001011274 209
95 3300005614 Ga0068856_100000146 Ga0068856_1000001469 209
96 3300005616 Ga0068852_100000035 Ga0068852_10000003527 209
97 3300006881 Ga0068865_100000056 Ga0068865_10000005656 209
98 3300009098 Ga0105245_10000319 Ga0105245_1000031937 209
99 3300009177 Ga0105248_10000210 Ga0105248_1000021051 209
100 3300010375 Ga0105239_10042096 Ga0105239_100420964 209
101 3300013105 Ga0157369_10000348 Ga0157369_1000034843 209
102 3300014326 Ga0157380_10000092 Ga0157380_1000009229 209
103 3300014969 Ga0157376_10007684 Ga0157376_100076847 209
104 3300025919 Ga0207657_10383558 Ga0207657_103835582 209
105 3300025927 Ga0207687_10000027 Ga0207687_1000002746 209
106 3300025932 Ga0207690_10004144 Ga0207690_100041446 209
107 3300025938 Ga0207704_10000092 Ga0207704_1000009218 209
108 3300025941 Ga0207711_10000165 Ga0207711_1000016511 209
109 3300026041 Ga0207639_10094710 Ga0207639_100947102 209
110 3300026078 Ga0207702_10003190 Ga0207702_1000319010 209
111 3300026078 Ga0207702_10186400 Ga0207702_101864003 209
112 3300026142 Ga0207698_10000014 Ga0207698_100000145 209
113 3300028379 Ga0268266_10068675 Ga0268266_100686754 209
114 3300032126 Ga0307415_100002532 Ga0307415_1000025328 209
115 3300044842 Ga0466957_0048891 Ga0466957_0048891_740_1372 209
116 3300046511 Ga0495608_0000079 Ga0495608_0000079_14876_15508 209
117 3300046516 Ga0495628_0069148 Ga0495628_0069148_429_1061 209
118 3300046675 Ga0495657_0000070 Ga0495657_0000070_14865_15497 209
119 3300047317 Ga0495604_0000460 Ga0495604_0000460_3227_3859 209
120 3300047444 Ga0495675_0000141 Ga0495675_0000141_17514_18146 209
121 3300047673 Ga0495593_0300339 Ga0495593_0300339_133_765 209
122 3300048907 Ga0496104_0121422 Ga0496104_0121422_529_1161 209
123 3300048915 Ga0496112_0031276 Ga0496112_0031276_1356_1988 209
124 3300048916 Ga0496113_0000156 Ga0496113_0000156_26216_26848 209
125 3300048916 Ga0496113_0033936 Ga0496113_0033936_171_902 209
126 3300048917 Ga0496114_0240472 Ga0496114_0240472_188_883 209
127 3300048929 Ga0496126_0018115 Ga0496126_0018115_4861_5496 209
128 3300048929 Ga0496126_0332961 Ga0496126_0332961_308_1003 209
129 3300053077 Ga0495601_0000096 Ga0495601_0000096_40923_41555 209
130 3300053084 Ga0495595_0000004 Ga0495595_0000004_183304_183936 209
131 3300053085 Ga0495619_0000173 Ga0495619_0000173_32023_32655 209
132 3300005365 Ga0070688_100000727 Ga0070688_10000072712 210
133 3300005466 Ga0070685_10000996 Ga0070685_1000099612 210
134 3300013308 Ga0157375_11038632 Ga0157375_110386322 210
135 3300025972 Ga0207668_10414171 Ga0207668_104141713 210
136 3300041512 Ga0451853_3379453 Ga0451853_3379453_41_676 210
137 3300046461 Ga0495641_0024920 Ga0495641_0024920_1366_2004 211
138 3300046517 Ga0495630_0000053 Ga0495630_0000053_5877_6515 211
139 3300046681 Ga0495647_0000188 Ga0495647_0000188_2177_2815 211
140 3300047321 Ga0495676_0078477 Ga0495676_0078477_1222_1860 211
141 3300053129 Ga0500628_000022 Ga0500628_000022_42062_42703 212
142 3300005344 Ga0070661_100220691 Ga0070661_1002206914 214
143 3300005535 Ga0070684_100102216 Ga0070684_1001022165 214
144 3300005330 Ga0070690_100225440 Ga0070690_1002254402 216
145 3300005338 Ga0068868_100064436 Ga0068868_1000644364 216
146 3300005455 Ga0070663_100367115 Ga0070663_1003671152 216
147 3300005456 Ga0070678_100029568 Ga0070678_1000295684 216
148 3300005548 Ga0070665_100005579 Ga0070665_10000557911 216
149 3300013297 Ga0157378_10001651 Ga0157378_1000165125 216
150 3300014326 Ga0157380_10404173 Ga0157380_104041732 216
151 3300026023 Ga0207677_10408802 Ga0207677_104088023 216
152 3300026121 Ga0207683_10180746 Ga0207683_101807463 216
153 3300028379 Ga0268266_10006057 Ga0268266_100060579 216
154 3300046459 Ga0495629_0000091 Ga0495629_0000091_14003_14656 216
155 3300046507 Ga0495606_0001247 Ga0495606_0001247_16887_17540 216
156 3300046690 Ga0495624_0000259 Ga0495624_0000259_29385_30038 216
157 3300005347 Ga0070668_100019130 Ga0070668_1000191306 217
158 3300025972 Ga0207668_10008314 Ga0207668_100083146 217
159 3300005329 Ga0070683_100365134 Ga0070683_1003651343 218
160 3300005543 Ga0070672_100000003 Ga0070672_100000003131 218
161 3300005563 Ga0068855_100093882 Ga0068855_1000938825 218
162 3300005564 Ga0070664_100007089 Ga0070664_1000070899 218
163 3300005834 Ga0068851_10108021 Ga0068851_101080213 218
164 3300009101 Ga0105247_10019388 Ga0105247_100193884 218
165 3300009177 Ga0105248_10094325 Ga0105248_100943253 218
166 3300025321 Ga0207656_10098740 Ga0207656_100987402 218
167 3300025900 Ga0207710_10012957 Ga0207710_100129573 218
168 3300025940 Ga0207691_10000005 Ga0207691_10000005131 218
169 3300025941 Ga0207711_10054458 Ga0207711_100544584 218
170 3300025944 Ga0207661_10318628 Ga0207661_103186283 218
171 3300025949 Ga0207667_10248931 Ga0207667_102489313 218
172 3300026142 Ga0207698_10324043 Ga0207698_103240433 218
173 3300046674 Ga0495588_0000554 Ga0495588_0000554_5725_6402 218
174 3300047320 Ga0495672_0088844 Ga0495672_0088844_501_1166 218
175 3300048913 Ga0496110_0271363 Ga0496110_0271363_700_1365 218
176 3300048914 Ga0496111_0139929 Ga0496111_0139929_753_1418 218
177 3300048917 Ga0496114_0148740 Ga0496114_0148740_983_1648 218
178 3300048927 Ga0496124_0097932 Ga0496124_0097932_198_863 218

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06736

TMEM175

Endosomal/lysosomal potassium channel TMEM175

52

140

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
7lf6-assembly1.cif.gz_B structure of lysosomal membrane protein 0.8382 18 197
6w8n-assembly1.cif.gz_B structure of a trans-membrane protein 0.8064 17 207
6w8p-assembly1.cif.gz_B structure of membrane protein with ions 0.8008 19 198
8fyf-assembly1.cif.gz_B human tmem175-lamp1 transmembrane domain only complex 0.7988 17 207
8dhm-assembly1.cif.gz_A human tmem175 in complex with 4-aminopyridine 0.7968 18 207
ID Description Score Start End Superfamily
af_Q9CXY1_32_121_1.20.1300.10 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.7526 20 107 1.20.1300.10
af_Q9CXY1_32_121_1.20.1300.10 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.7301 20 107 1.20.1300.10
af_O76666_7_159_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.5726 95 209 1.20.1070.10
af_Q61140_738_874_1.20.120.230 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.5371 92 207 1.20.120.230
af_Q54K81_728_849_1.20.120.230 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.5366 89 202 1.20.120.230
ID Description Score Start End GO Terms
AF-A0A1E4PA49-F1-model_v4 deleted 0.9431 18 204
AF-A0A3D4WQ76-F1-model_v4 DUF1211 domain-containing protein 0.9381 17 208 GO:0005267
GO:0015252
GO:0016020
AF-A0A1Q7UKY2-F1-model_v4 DUF1211 domain-containing membrane protein 0.928 17 180 GO:0005267
GO:0015252
GO:0016020
AF-A0A328S695-F1-model_v4 DUF1211 domain-containing membrane protein 0.9252 16 148 GO:0005267
GO:0015252
GO:0016020
AF-A0A2J0MCT1-F1-model_v4 DUF1211 domain-containing protein 0.9214 17 180 GO:0005267
GO:0015252
GO:0016020

Feature Viewer

pLDDT pTM Quality
83.99 0.79 High
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Predicted Structure (AlphaFold2)

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