F269860

General Info

Members Datasets Scaffolds Average Seq Length
177 108 354 253

Family's Representative Sequence

Representative Sequence 3300005578|Ga0068854_100052646|Ga0068854_1000526463
Length 284
Sequence LISHAKTQRRKEDAKAIKFFFAAFLCDFATLREIAFTMDVLTEIIAKKRERLRSLLVTGSPHKLRNALRNDGINIIAEFKRRSPSKGIIREGANPIEIARAYQAGGAVAMSVLTEEDYFAGSLDDLRAVKSAVNLPVLRKDFIVDEYQVYESAVAGADAILLIVAALDDELLARLRRLAEDELQLDALVEVHTSDEMKRAAAVGAKLIGVNNRDLRTFEVSIDTSLSLAREAPADAVLISESGLKSAADLQRLHEAGYRGFLIGETLMRADDPEQTLRSFRGLQ

Samples

Sample ID Description Type Environment
1 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
2 3300000532 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
5 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
9 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
20 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
21 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
22 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
23 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
24 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
25 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
26 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
27 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
28 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
29 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
30 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
31 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
32 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
33 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
36 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
41 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
42 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
43 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
44 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
45 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
46 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
47 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
49 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
52 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
53 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
54 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
55 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
57 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
60 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
63 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
64 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
65 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
66 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
67 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
68 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
69 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
97 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
100 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
101 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
102 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
103 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
104 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
105 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
108 2687453129 Halotalea alkalilenta IHB B 13600 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.44
Metatranscriptomes 0
Isolates 0.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.56
Rhizosphere 98.31
Stem 0
Stem Tuber 0
Unclassified 17.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068854_100052646 3300005578 Unclassified 2920
2 CNAas_1000100 3300000532 Bacteria 6946
3 JGI24737J22298_10088909 3300001990 Bacteria 917
4 JGI24751J29686_10000074 3300002459 Bacteria 56035
5 JGI25406J46586_10003115 3300003203 Bacteria 7795
6 rootL2_10219792 3300003322 Bacteria 2654
7 Ga0065714_10064450 3300005288 Bacteria 77548
8 Ga0065712_10006759 3300005290 Unclassified 2543
9 Ga0065712_10067784 3300005290 Bacteria 36245
10 Ga0065712_10233925 3300005290 Bacteria 1003
11 Ga0065715_10090331 3300005293 Bacteria 7198
12 Ga0065715_10249780 3300005293 Bacteria 1171
13 Ga0070676_10083536 3300005328 Bacteria 1942
14 Ga0070670_100001763 3300005331 Bacteria 17603
15 Ga0070670_100103284 3300005331 Bacteria 2455
16 Ga0070670_100578990 3300005331 Bacteria 1003
17 Ga0068869_100523028 3300005334 Bacteria 993
18 Ga0070682_100047204 3300005337 Bacteria 2676
19 Ga0070689_100405406 3300005340 Bacteria 1153
20 Ga0070692_10047733 3300005345 Bacteria 2217
21 Ga0070669_100064084 3300005353 Unclassified 2706
22 Ga0070675_100129009 3300005354 Unclassified 2153
23 Ga0070673_100151409 3300005364 Bacteria 1965
24 Ga0070673_100197008 3300005364 Bacteria 1733
25 Ga0070673_100693325 3300005364 Bacteria 935
26 Ga0070659_100028336 3300005366 Bacteria 4324
27 Ga0070701_10102598 3300005438 Bacteria 1587
28 Ga0070705_100108412 3300005440 Bacteria 1769
29 Ga0070705_100483463 3300005440 Unclassified 936
30 Ga0070700_100192783 3300005441 Bacteria 1426
31 Ga0070700_100241259 3300005441 Unclassified 1291
32 Ga0070700_100381582 3300005441 Bacteria 1054
33 Ga0070700_100556186 3300005441 Bacteria 892
34 Ga0070694_100096533 3300005444 Bacteria 2084
35 Ga0070694_100605335 3300005444 Unclassified 883
36 Ga0068867_100051937 3300005459 Bacteria 3024
37 Ga0070706_100000044 3300005467 Bacteria 146303
38 Ga0070707_100030366 3300005468 Bacteria 5145
39 Ga0070698_100003679 3300005471 Bacteria 16836
40 Ga0070698_100031414 3300005471 Bacteria 5506
41 Ga0070679_100051616 3300005530 Bacteria 4096
42 Ga0068853_100410406 3300005539 Bacteria 1269
43 Ga0068853_100592125 3300005539 Unclassified 1053
44 Ga0070695_100608551 3300005545 Bacteria 858
45 Ga0070696_100208140 3300005546 Bacteria 1463
46 Ga0070693_100092468 3300005547 Bacteria 1826
47 Ga0070693_100428845 3300005547 Unclassified 923
48 Ga0070704_100543387 3300005549 Bacteria 1014
49 Ga0070664_100100229 3300005564 Bacteria 2518
50 Ga0070664_100608372 3300005564 Bacteria 1014
51 Ga0068857_100164315 3300005577 Bacteria 2015
52 Ga0068857_100275455 3300005577 Bacteria 1547
53 Ga0070702_100004220 3300005615 Bacteria 6539
54 Ga0068852_100214481 3300005616 Unclassified 1828
55 Ga0068852_100508032 3300005616 Unclassified 1201
56 Ga0068859_100040011 3300005617 Bacteria 4705
57 Ga0068859_100067620 3300005617 Bacteria 3607
58 Ga0068859_100074471 3300005617 Unclassified 3434
59 Ga0068859_100095500 3300005617 Bacteria 3025
60 Ga0068859_100402186 3300005617 Bacteria 1465
61 Ga0068859_100539039 3300005617 Bacteria 1262
62 Ga0068859_100693957 3300005617 Bacteria 1109
63 Ga0068864_100326891 3300005618 Bacteria 1441
64 Ga0068861_100341640 3300005719 Bacteria 1310
65 Ga0068863_100295419 3300005841 Unclassified 1571
66 Ga0068863_100406888 3300005841 Bacteria 1332
67 Ga0068863_100753572 3300005841 Bacteria 970
68 Ga0068858_100020225 3300005842 Bacteria 6225
69 Ga0068858_100195064 3300005842 Bacteria 1914
70 Ga0068860_100043060 3300005843 Bacteria 4309
71 Ga0068860_100164344 3300005843 Bacteria 2142
72 Ga0068860_100465996 3300005843 Bacteria 1258
73 Ga0068862_100454116 3300005844 Bacteria 1209
74 Ga0081455_10006468 3300005937 Bacteria 12557
75 Ga0081539_10000976 3300005985 Bacteria 53364
76 Ga0097621_100013788 3300006237 Bacteria 6034
77 Ga0097621_100713476 3300006237 Bacteria 924
78 Ga0068871_100021562 3300006358 Bacteria 4954
79 Ga0075428_100563841 3300006844 Unclassified 1217
80 Ga0097620_100040007 3300006931 Bacteria 4705
81 Ga0097620_100067619 3300006931 Bacteria 3607
82 Ga0097620_100074473 3300006931 Unclassified 3434
83 Ga0097620_100095496 3300006931 Bacteria 3025
84 Ga0097620_100402176 3300006931 Bacteria 1465
85 Ga0097620_100539072 3300006931 Bacteria 1262
86 Ga0097620_100694058 3300006931 Bacteria 1109
87 Ga0075435_100060523 3300007076 Bacteria 3071
88 Ga0105240_10113336 3300009093 Bacteria 3277
89 Ga0105240_11131377 3300009093 Unclassified 832
90 Ga0111539_10100879 3300009094 Bacteria 3389
91 Ga0105247_10003286 3300009101 Bacteria 10592
92 Ga0105247_10407685 3300009101 Unclassified 970
93 Ga0114129_10046515 3300009147 Bacteria 6098
94 Ga0114129_10279559 3300009147 Bacteria 2230
95 Ga0114129_10493536 3300009147 Bacteria 1600
96 Ga0105243_10017500 3300009148 Bacteria 5419
97 Ga0105243_10675005 3300009148 Bacteria 1004
98 Ga0105241_10339461 3300009174 Unclassified 1301
99 Ga0105248_10045575 3300009177 Bacteria 4916
100 Ga0105238_10021636 3300009551 Bacteria 6551
101 Ga0105238_10376028 3300009551 Unclassified 1412
102 Ga0105249_10069864 3300009553 Bacteria 3242
103 Ga0105246_10205604 3300011119 Bacteria 1534
104 Ga0105246_10232964 3300011119 Bacteria 1451
105 Ga0157373_10030235 3300013100 Bacteria 3897
106 Ga0157371_10492293 3300013102 Bacteria 905
107 Ga0163162_10170776 3300013306 Bacteria 2299
108 Ga0163162_10279148 3300013306 Unclassified 1803
109 Ga0157372_10016718 3300013307 Bacteria 7875
110 Ga0157372_11178739 3300013307 Unclassified 885
111 Ga0163163_10000773 3300014325 Bacteria 27136
112 Ga0163163_10794494 3300014325 Bacteria 1010
113 Ga0157380_10090626 3300014326 Bacteria 2523
114 Ga0157380_10118438 3300014326 Bacteria 2238
115 Ga0157379_10118499 3300014968 Bacteria 2381
116 Ga0157379_10262941 3300014968 Bacteria 1568
117 Ga0207710_10001033 3300025900 Bacteria 14417
118 Ga0207647_10069091 3300025904 Bacteria 2136
119 Ga0207645_10017803 3300025907 Bacteria 4684
120 Ga0207643_10068301 3300025908 Bacteria 2041
121 Ga0207643_10275804 3300025908 Bacteria 1042
122 Ga0207684_10000085 3300025910 Bacteria 175922
123 Ga0207695_10221521 3300025913 Bacteria 1799
124 Ga0207660_10071698 3300025917 Bacteria 2521
125 Ga0207652_10129051 3300025921 Unclassified 2254
126 Ga0207646_10037757 3300025922 Bacteria 4354
127 Ga0207681_10041853 3300025923 Bacteria 3057
128 Ga0207694_10019645 3300025924 Bacteria 5111
129 Ga0207650_10000028 3300025925 Bacteria 236867
130 Ga0207650_10073641 3300025925 Bacteria 2573
131 Ga0207650_10481000 3300025925 Bacteria 1036
132 Ga0207659_10099568 3300025926 Bacteria 2189
133 Ga0207709_10135885 3300025935 Bacteria 1683
134 Ga0207665_10029516 3300025939 Bacteria 3625
135 Ga0207691_10258449 3300025940 Unclassified 1501
136 Ga0207689_10099202 3300025942 Bacteria 2393
137 Ga0207679_10295832 3300025945 Bacteria 1393
138 Ga0207651_10601318 3300025960 Bacteria 961
139 Ga0207712_10003678 3300025961 Bacteria 9671
140 Ga0207640_10503716 3300025981 Bacteria 1009
141 Ga0207703_10223945 3300026035 Bacteria 1683
142 Ga0207703_10240146 3300026035 Bacteria 1628
143 Ga0207708_10008143 3300026075 Bacteria 7763
144 Ga0207708_10064570 3300026075 Bacteria 2797
145 Ga0207708_10105559 3300026075 Bacteria 2183
146 Ga0207708_10108879 3300026075 Unclassified 2149
147 Ga0207708_10502150 3300026075 Bacteria 1017
148 Ga0207648_10090807 3300026089 Unclassified 2669
149 Ga0207648_10220661 3300026089 Bacteria 1685
150 Ga0207676_10554963 3300026095 Unclassified 1098
151 Ga0207676_10650647 3300026095 Unclassified 1017
152 Ga0207676_10699858 3300026095 Bacteria 982
153 Ga0207674_10090225 3300026116 Bacteria 3056
154 Ga0207674_10098290 3300026116 Bacteria 2911
155 Ga0207674_10387804 3300026116 Bacteria 1350
156 Ga0207674_10399491 3300026116 Bacteria 1328
157 Ga0207674_10423577 3300026116 Unclassified 1286
158 Ga0207675_100269242 3300026118 Bacteria 1653
159 Ga0207428_10013038 3300027907 Bacteria 7279
160 Ga0268265_10320431 3300028380 Bacteria 1404
161 Ga0268264_10077086 3300028381 Bacteria 2838
162 Ga0268264_10119017 3300028381 Bacteria 2325
163 Ga0268264_10138276 3300028381 Bacteria 2169
164 Ga0268264_10363625 3300028381 Bacteria 1381
165 Ga0373951_0003793 3300035091 Bacteria 3640
166 Ga0373951_0036992 3300035091 Bacteria 1167
167 Ga0373941_0139583 3300035115 Unclassified 880
168 Ga0373942_0006681 3300035207 Bacteria 2664
169 Ga0395900_0141062 3300037418 Unclassified 2468
170 Ga0395898_0192883 3300037466 Bacteria 1947
171 Ga0395901_0354835 3300038443 Bacteria 1513
172 Ga0496112_0199165 3300048915 Bacteria 1963
173 nmdc:mga05p37_324641_c1 3300050507 Unclassified 1820
174 nmdc:mga05p37_401477_c1 3300050507 Bacteria 1600
175 nmdc:mga08y16_29165_c1 3300050511 Bacteria 5815
176 nmdc:mga08y16_8236_c1 3300050511 Bacteria 10905
177 2687579909 2687453129 Bacteria 4387428
178 Ga0068854_100052646
179 CNAas_1000100
180 JGI24737J22298_10088909
181 JGI24751J29686_10000074
182 JGI25406J46586_10003115
183 rootL2_10219792
184 Ga0065714_10064450
185 Ga0065712_10006759
186 Ga0065712_10067784
187 Ga0065712_10233925
188 Ga0065715_10090331
189 Ga0065715_10249780
190 Ga0070676_10083536
191 Ga0070670_100001763
192 Ga0070670_100103284
193 Ga0070670_100578990
194 Ga0068869_100523028
195 Ga0070682_100047204
196 Ga0070689_100405406
197 Ga0070692_10047733
198 Ga0070669_100064084
199 Ga0070675_100129009
200 Ga0070673_100151409
201 Ga0070673_100197008
202 Ga0070673_100693325
203 Ga0070659_100028336
204 Ga0070701_10102598
205 Ga0070705_100108412
206 Ga0070705_100483463
207 Ga0070700_100192783
208 Ga0070700_100241259
209 Ga0070700_100381582
210 Ga0070700_100556186
211 Ga0070694_100096533
212 Ga0070694_100605335
213 Ga0068867_100051937
214 Ga0070706_100000044
215 Ga0070707_100030366
216 Ga0070698_100003679
217 Ga0070698_100031414
218 Ga0070679_100051616
219 Ga0068853_100410406
220 Ga0068853_100592125
221 Ga0070695_100608551
222 Ga0070696_100208140
223 Ga0070693_100092468
224 Ga0070693_100428845
225 Ga0070704_100543387
226 Ga0070664_100100229
227 Ga0070664_100608372
228 Ga0068857_100164315
229 Ga0068857_100275455
230 Ga0070702_100004220
231 Ga0068852_100214481
232 Ga0068852_100508032
233 Ga0068859_100040011
234 Ga0068859_100067620
235 Ga0068859_100074471
236 Ga0068859_100095500
237 Ga0068859_100402186
238 Ga0068859_100539039
239 Ga0068859_100693957
240 Ga0068864_100326891
241 Ga0068861_100341640
242 Ga0068863_100295419
243 Ga0068863_100406888
244 Ga0068863_100753572
245 Ga0068858_100020225
246 Ga0068858_100195064
247 Ga0068860_100043060
248 Ga0068860_100164344
249 Ga0068860_100465996
250 Ga0068862_100454116
251 Ga0081455_10006468
252 Ga0081539_10000976
253 Ga0097621_100013788
254 Ga0097621_100713476
255 Ga0068871_100021562
256 Ga0075428_100563841
257 Ga0097620_100040007
258 Ga0097620_100067619
259 Ga0097620_100074473
260 Ga0097620_100095496
261 Ga0097620_100402176
262 Ga0097620_100539072
263 Ga0097620_100694058
264 Ga0075435_100060523
265 Ga0105240_10113336
266 Ga0105240_11131377
267 Ga0111539_10100879
268 Ga0105247_10003286
269 Ga0105247_10407685
270 Ga0114129_10046515
271 Ga0114129_10279559
272 Ga0114129_10493536
273 Ga0105243_10017500
274 Ga0105243_10675005
275 Ga0105241_10339461
276 Ga0105248_10045575
277 Ga0105238_10021636
278 Ga0105238_10376028
279 Ga0105249_10069864
280 Ga0105246_10205604
281 Ga0105246_10232964
282 Ga0157373_10030235
283 Ga0157371_10492293
284 Ga0163162_10170776
285 Ga0163162_10279148
286 Ga0157372_10016718
287 Ga0157372_11178739
288 Ga0163163_10000773
289 Ga0163163_10794494
290 Ga0157380_10090626
291 Ga0157380_10118438
292 Ga0157379_10118499
293 Ga0157379_10262941
294 Ga0207710_10001033
295 Ga0207647_10069091
296 Ga0207645_10017803
297 Ga0207643_10068301
298 Ga0207643_10275804
299 Ga0207684_10000085
300 Ga0207695_10221521
301 Ga0207660_10071698
302 Ga0207652_10129051
303 Ga0207646_10037757
304 Ga0207681_10041853
305 Ga0207694_10019645
306 Ga0207650_10000028
307 Ga0207650_10073641
308 Ga0207650_10481000
309 Ga0207659_10099568
310 Ga0207709_10135885
311 Ga0207665_10029516
312 Ga0207691_10258449
313 Ga0207689_10099202
314 Ga0207679_10295832
315 Ga0207651_10601318
316 Ga0207712_10003678
317 Ga0207640_10503716
318 Ga0207703_10223945
319 Ga0207703_10240146
320 Ga0207708_10008143
321 Ga0207708_10064570
322 Ga0207708_10105559
323 Ga0207708_10108879
324 Ga0207708_10502150
325 Ga0207648_10090807
326 Ga0207648_10220661
327 Ga0207676_10554963
328 Ga0207676_10650647
329 Ga0207676_10699858
330 Ga0207674_10090225
331 Ga0207674_10098290
332 Ga0207674_10387804
333 Ga0207674_10399491
334 Ga0207674_10423577
335 Ga0207675_100269242
336 Ga0207428_10013038
337 Ga0268265_10320431
338 Ga0268264_10077086
339 Ga0268264_10119017
340 Ga0268264_10138276
341 Ga0268264_10363625
342 Ga0373951_0003793
343 Ga0373951_0036992
344 Ga0373941_0139583
345 Ga0373942_0006681
346 Ga0395900_0141062
347 Ga0395898_0192883
348 Ga0395901_0354835
349 Ga0496112_0199165
350 nmdc:mga05p37_324641_c1
351 nmdc:mga05p37_401477_c1
352 nmdc:mga08y16_29165_c1
353 nmdc:mga08y16_8236_c1
354 2687579909

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00218

IGPS

Indole-3-glycerol phosphate synthase

37

280

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3t55-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis indole glycerol phosphate synthase (igps) in complex with phenoxymethyl benzoic acid (pmba) 0.9574 4 260
3t40-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis indole glycerol phosphate synthase (igps) complex with n-2-carboxyphenyl glycine (cpg) 0.9505 3 260
3t78-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis indole glycerol phosphate synthase (igps) in complex with 5-fluoroanthranilate 0.9473 4 260
1i4n-assembly2.cif.gz_B crystal structure of indoleglycerol phosphate synthase from thermotoga maritima 0.9446 39 260
2c3z-assembly1.cif.gz_A crystal structure of a truncated variant of indole-3-glycerol phosphate synthase from sulfolobus solfataricus 0.9439 42 261
ID Description Score Start End Superfamily
3t40A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9505 3 260 3.20.20.70
1i4nB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9446 39 260 3.20.20.70
2c3zA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9439 42 261 3.20.20.70
af_Q0JCI6_1_245_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9383 42 259 3.20.20.70
af_P00937_209_484_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9351 2 261 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A7W0UWN6-F1-model_v4 indole-3-glycerol-phosphate synthase (EC 4.1.1.48) 0.9971 89 259 GO:0000162
GO:0004425
GO:0004640
AF-A0A2V6C670-F1-model_v4 indole-3-glycerol-phosphate synthase (EC 4.1.1.48) 0.9957 127 259 GO:0000162
GO:0004425
GO:0004640
AF-A0A2V8QRJ2-F1-model_v4 indole-3-glycerol-phosphate synthase (EC 4.1.1.48) 0.9945 124 262 GO:0000162
GO:0004425
GO:0004640
AF-A0A2V6HGT3-F1-model_v4 indole-3-glycerol-phosphate synthase (EC 4.1.1.48) 0.9943 81 259 GO:0000162
GO:0004425
GO:0004640
AF-A0A7V9HTD9-F1-model_v4 indole-3-glycerol-phosphate synthase (EC 4.1.1.48) 0.9942 43 260 GO:0000162
GO:0004425
GO:0004640
GO:0006568

Map