F269056

General Info

Members Datasets Scaffolds Average Seq Length
176 140 352 511

Family's Representative Sequence

Representative Sequence 3300049585|Ga0501069_0000015|Ga0501069_0000015_127496_129208
Length 557
Sequence MLQASFAGVSAGGISPSVGLSWRDRVRAAVRDPERRKFFGVYLGAKMLGIVALFGAIALLTWLASGVASAMPLVKGQAAAPNVTDVVNATNTAWTLVAAFLVFFMQAGFMMLEAGFARTRETVNILLECVADTALCGLLFWAFGFAFMFGTGNGLIGHTNFFLNGAGATATYGSTGVAFLAFFLFQFAFADTCSTITSGAMVGRTDFKGDLLYSVGVSGFIYPILGHWIWGPGGWLGVVFHDFAGSTVVHTIGGVLALTGAIALGPRLGRVFKRDGGGLMPGHDLTIAALGGVILWFGWYGFNPGSTLSALDSAGIGRVAANTTLAACSGALVAMAWMYKRVKFWDLGITTNGFLAGLVAITCPCYWVSPTGAVLIGAIAALVCIWGIDFIEWLRIDDPIGAVAVHGGAGIWGTLSLGLFASGQYGVPTPNGADTSTVVKGLFYGGGLQQLGAQVLGSVVITACTLAGGLALMFGVRAIKMLRVSEQGELQGLDLHEHGSPAYRPEFQFTGYVPAGSSHPQGQASAPSGFASGLPAPVEMVPVEVEGGETSRQAEPV

Samples

Sample ID Description Type Environment
1 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
22 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
23 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
24 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
29 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
32 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
33 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
34 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
37 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
38 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
39 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
40 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
43 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
44 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
45 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
46 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
48 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
49 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
50 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
51 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
52 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
53 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
54 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
55 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
56 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
57 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
58 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
59 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
60 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
61 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
62 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
64 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
92 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
93 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
94 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
95 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
96 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
97 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
98 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
99 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
100 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
103 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
104 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
105 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
106 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
107 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
108 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
109 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
110 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
111 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
112 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
113 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
116 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
117 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
118 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
119 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
120 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
121 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
122 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
123 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
124 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
125 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
132 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
133 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
134 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
135 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
136 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
137 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
138 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
139 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
140 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.86
Metatranscriptomes 0.57
Isolates 0.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.98
Nodule 0
Rhizoplane 11.36
Rhizosphere 82.39
Stem 0
Stem Tuber 0
Unclassified 5.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501069_0000015 3300049585 Bacteria 144828
2 JGI24739J22299_10015835 3300001989 Bacteria 2737
3 JGI24737J22298_10000936 3300001990 Bacteria 10336
4 JGI24735J21928_10000028 3300002067 Bacteria 83192
5 JGI24751J29686_10000701 3300002459 Bacteria 8201
6 rootH1_10176631 3300003323 Bacteria 4256
7 Ga0065712_10106087 3300005290 Bacteria 1911
8 Ga0070683_100014011 3300005329 Bacteria 7002
9 Ga0070670_100033954 3300005331 Bacteria 4392
10 Ga0070670_100132424 3300005331 Bacteria 2153
11 Ga0070680_100144840 3300005336 Archaea 1993
12 Ga0070660_100009437 3300005339 Bacteria 6862
13 Ga0070691_10052785 3300005341 Bacteria 1944
14 Ga0070661_100059096 3300005344 Bacteria 2810
15 Ga0070692_10077251 3300005345 Bacteria 1786
16 Ga0070668_100018002 3300005347 Bacteria 5300
17 Ga0070669_100033229 3300005353 Unclassified 3730
18 Ga0070669_100044575 3300005353 Bacteria 3231
19 Ga0070671_100068713 3300005355 Bacteria 2955
20 Ga0070674_100043906 3300005356 Bacteria 3043
21 Ga0070673_100119442 3300005364 Unclassified 2196
22 Ga0070659_100000578 3300005366 Bacteria 26773
23 Ga0070709_10017380 3300005434 Archaea 4124
24 Ga0070714_100076106 3300005435 Bacteria 2913
25 Ga0070713_100112975 3300005436 Archaea 2371
26 Ga0070708_100180820 3300005445 Bacteria 1971
27 Ga0070663_100020916 3300005455 Bacteria 4341
28 Ga0070678_100013960 3300005456 Bacteria 5053
29 Ga0070681_10005738 3300005458 Bacteria 11999
30 Ga0068867_100094503 3300005459 Bacteria 2273
31 Ga0068867_100104179 3300005459 Bacteria 2171
32 Ga0070698_100033970 3300005471 Bacteria 5283
33 Ga0070684_100024362 3300005535 Bacteria 5076
34 Ga0070672_100101881 3300005543 Bacteria 2330
35 Ga0070696_100017122 3300005546 Bacteria 4891
36 Ga0070693_100031658 3300005547 Bacteria 2901
37 Ga0070704_100015483 3300005549 Bacteria 4791
38 Ga0070664_100008269 3300005564 Bacteria 8416
39 Ga0068857_100144475 3300005577 Unclassified 2152
40 Ga0068864_100012385 3300005618 Bacteria 7052
41 Ga0068866_10014791 3300005718 Bacteria 3453
42 Ga0068861_100055429 3300005719 Bacteria 3022
43 Ga0068870_10029849 3300005840 Unclassified 2751
44 Ga0068860_100003599 3300005843 Bacteria 15922
45 Ga0075365_10029735 3300006038 Bacteria 3495
46 Ga0075368_10030746 3300006042 Bacteria 2080
47 Ga0075367_10020399 3300006178 Bacteria 3690
48 Ga0075366_10090359 3300006195 Bacteria 1834
49 Ga0097621_100002713 3300006237 Bacteria 12121
50 Ga0097621_100034270 3300006237 Bacteria 4049
51 Ga0068871_100018716 3300006358 Bacteria 5273
52 Ga0075428_100001698 3300006844 Bacteria 23498
53 Ga0075434_100002842 3300006871 Bacteria 15346
54 Ga0075435_100097777 3300007076 Bacteria 2429
55 Ga0105240_10000016 3300009093 Bacteria 447794
56 Ga0111539_10164917 3300009094 Unclassified 2591
57 Ga0105245_10012826 3300009098 Bacteria 7302
58 Ga0105243_10062983 3300009148 Bacteria 2971
59 Ga0105242_10017930 3300009176 Bacteria 5529
60 Ga0105242_10042183 3300009176 Bacteria 3683
61 Ga0105239_10070911 3300010375 Bacteria 3828
62 Ga0157373_10000119 3300013100 Bacteria 62053
63 Ga0157371_10009418 3300013102 Bacteria 7686
64 Ga0157372_10000459 3300013307 Bacteria 44769
65 Ga0157372_10001216 3300013307 Bacteria 27849
66 Ga0163163_10012079 3300014325 Bacteria 7857
67 Ga0163163_10063287 3300014325 Bacteria 3667
68 Ga0157376_10159038 3300014969 Bacteria 2046
69 Ga0206352_11065095 3300020078 Bacteria 1679
70 Ga0209026_1000619 3300025250 Bacteria 22424
71 Ga0207697_10035959 3300025315 Bacteria 2028
72 Ga0207642_10006900 3300025899 Bacteria 3803
73 Ga0207699_10021295 3300025906 Bacteria 3492
74 Ga0207699_10049219 3300025906 Archaea 2480
75 Ga0207643_10066340 3300025908 Bacteria 2069
76 Ga0207695_10000042 3300025913 Bacteria 447793
77 Ga0207693_10059422 3300025915 Bacteria 2995
78 Ga0207649_10022736 3300025920 Bacteria 3623
79 Ga0207652_10041360 3300025921 Archaea 3918
80 Ga0207681_10018092 3300025923 Unclassified 4436
81 Ga0207681_10084847 3300025923 Bacteria 2246
82 Ga0207650_10037965 3300025925 Bacteria 3513
83 Ga0207659_10023351 3300025926 Bacteria 4126
84 Ga0207687_10002124 3300025927 Bacteria 13528
85 Ga0207664_10064986 3300025929 Bacteria 2920
86 Ga0207690_10002593 3300025932 Bacteria 10912
87 Ga0207686_10007486 3300025934 Bacteria 5876
88 Ga0207686_10018929 3300025934 Bacteria 3906
89 Ga0207709_10030360 3300025935 Bacteria 3143
90 Ga0207709_10033379 3300025935 Bacteria 3021
91 Ga0207691_10008442 3300025940 Bacteria 9892
92 Ga0207691_10111106 3300025940 Bacteria 2437
93 Ga0207691_10118432 3300025940 Bacteria 2349
94 Ga0207661_10048159 3300025944 Bacteria 3385
95 Ga0207703_10045548 3300026035 Bacteria 3529
96 Ga0207678_10036734 3300026067 Bacteria 4264
97 Ga0207708_10005254 3300026075 Bacteria 9537
98 Ga0207648_10005405 3300026089 Bacteria 12878
99 Ga0207648_10010990 3300026089 Bacteria 8550
100 Ga0207676_10029401 3300026095 Bacteria 4114
101 Ga0207674_10065876 3300026116 Unclassified 3651
102 Ga0207674_10224228 3300026116 Bacteria 1828
103 Ga0207675_100035785 3300026118 Bacteria 4631
104 Ga0207675_100160690 3300026118 Bacteria 2143
105 Ga0207683_10055705 3300026121 Unclassified 3467
106 Ga0268264_10002831 3300028381 Bacteria 15137
107 Ga0307515_10003049 3300028794 Bacteria 35493
108 Ga0265327_10000117 3300031251 Bacteria 173075
109 Ga0265327_10008261 3300031251 Bacteria 7797
110 Ga0265327_10019018 3300031251 Bacteria 4238
111 Ga0307509_10040159 3300031507 Bacteria 5090
112 Ga0373931_0070435 3300035691 Bacteria 1908
113 Ga0373947_0051790 3300035725 Bacteria 2471
114 Ga0373925_0083255 3300037068 Bacteria 2436
115 Ga0466972_0000095 3300044658 Bacteria 77981
116 Ga0466972_0010346 3300044658 Bacteria 4683
117 Ga0466965_0007478 3300044683 Bacteria 5021
118 Ga0466968_0000908 3300044735 Bacteria 10430
119 Ga0466960_0001723 3300044901 Bacteria 8028
120 Ga0451576_0009411 3300045051 Bacteria 11329
121 Ga0495603_0028977 3300046455 Bacteria 3340
122 Ga0495653_0122205 3300046463 Bacteria 1854
123 Ga0495650_0000119 3300046471 Bacteria 185719
124 Ga0495580_0042660 3300046472 Bacteria 3231
125 Ga0495582_0028314 3300046473 Bacteria 3075
126 Ga0495606_0000008 3300046507 Bacteria 321373
127 Ga0495606_0019341 3300046507 Bacteria 5072
128 Ga0495628_0003293 3300046516 Bacteria 14451
129 Ga0495630_0015047 3300046517 Bacteria 5644
130 Ga0495586_0063359 3300046535 Bacteria 2014
131 Ga0495667_0065689 3300046559 Bacteria 2373
132 Ga0495658_0004991 3300046683 Bacteria 6515
133 Ga0495687_002537 3300047443 Bacteria 14472
134 Ga0495684_0010900 3300047471 Bacteria 7028
135 Ga0496101_0047323 3300048904 Unclassified 3087
136 Ga0496101_0073884 3300048904 Bacteria 2505
137 Ga0496102_0045724 3300048905 Bacteria 3975
138 Ga0496103_0043497 3300048906 Bacteria 2766
139 Ga0496104_0019013 3300048907 Bacteria 6277
140 Ga0496104_0037081 3300048907 Bacteria 4559
141 Ga0496105_0053564 3300048908 Bacteria 3332
142 Ga0496108_0010570 3300048911 Bacteria 7493
143 Ga0496108_0198165 3300048911 Bacteria 1742
144 Ga0496110_0027284 3300048913 Bacteria 4894
145 Ga0496110_0029812 3300048913 Bacteria 4700
146 Ga0496111_0045003 3300048914 Bacteria 3174
147 Ga0496111_0132998 3300048914 Bacteria 1841
148 Ga0496111_0236382 3300048914 Bacteria 1357
149 Ga0496112_0000790 3300048915 Bacteria 22344
150 Ga0496112_0023717 3300048915 Bacteria 5869
151 Ga0496112_0030303 3300048915 Bacteria 5234
152 Ga0496112_0039419 3300048915 Bacteria 4617
153 Ga0496115_0061850 3300048918 Bacteria 3019
154 Ga0496115_0216690 3300048918 Bacteria 1580
155 Ga0501033_0011945 3300049570 Bacteria 6635
156 Ga0501036_0167125 3300049572 Bacteria 1854
157 Ga0501043_0091676 3300049579 Bacteria 2389
158 Ga0501046_0083131 3300049580 Bacteria 2472
159 Ga0501047_0014264 3300049581 Bacteria 7557
160 Ga0501048_0052636 3300049582 Bacteria 2898
161 Ga0501069_0014151 3300049585 Bacteria 4260
162 Ga0501070_0000066 3300049586 Bacteria 87890
163 Ga0501070_0031827 3300049586 Bacteria 4418
164 Ga0501080_0000901 3300049742 Bacteria 24339
165 Ga0501080_0131236 3300049742 Bacteria 2319
166 Ga0501044_0016097 3300049823 Bacteria 8039
167 nmdc:mga0yw44_31962_c1 3300050492 Bacteria 3064
168 nmdc:mga06z11_12712_c1 3300050494 Bacteria 3669
169 nmdc:mga0qj67_82854_c1 3300050509 Bacteria 2572
170 nmdc:mga0n895_116938_c1 3300050512 Bacteria 2685
171 nmdc:mga0n895_8433_c1 3300050512 Bacteria 8922
172 Ga0495619_0008634 3300053085 Bacteria 6447
173 Ga0495619_0051490 3300053085 Bacteria 2721
174 Ga0495619_0067380 3300053085 Bacteria 2390
175 Ga0500566_0003388 3300053094 Bacteria 9514
176 2932088209 2932082852 Bacteria 6563563
177 Ga0501069_0000015
178 JGI24739J22299_10015835
179 JGI24737J22298_10000936
180 JGI24735J21928_10000028
181 JGI24751J29686_10000701
182 rootH1_10176631
183 Ga0065712_10106087
184 Ga0070683_100014011
185 Ga0070670_100033954
186 Ga0070670_100132424
187 Ga0070680_100144840
188 Ga0070660_100009437
189 Ga0070691_10052785
190 Ga0070661_100059096
191 Ga0070692_10077251
192 Ga0070668_100018002
193 Ga0070669_100033229
194 Ga0070669_100044575
195 Ga0070671_100068713
196 Ga0070674_100043906
197 Ga0070673_100119442
198 Ga0070659_100000578
199 Ga0070709_10017380
200 Ga0070714_100076106
201 Ga0070713_100112975
202 Ga0070708_100180820
203 Ga0070663_100020916
204 Ga0070678_100013960
205 Ga0070681_10005738
206 Ga0068867_100094503
207 Ga0068867_100104179
208 Ga0070698_100033970
209 Ga0070684_100024362
210 Ga0070672_100101881
211 Ga0070696_100017122
212 Ga0070693_100031658
213 Ga0070704_100015483
214 Ga0070664_100008269
215 Ga0068857_100144475
216 Ga0068864_100012385
217 Ga0068866_10014791
218 Ga0068861_100055429
219 Ga0068870_10029849
220 Ga0068860_100003599
221 Ga0075365_10029735
222 Ga0075368_10030746
223 Ga0075367_10020399
224 Ga0075366_10090359
225 Ga0097621_100002713
226 Ga0097621_100034270
227 Ga0068871_100018716
228 Ga0075428_100001698
229 Ga0075434_100002842
230 Ga0075435_100097777
231 Ga0105240_10000016
232 Ga0111539_10164917
233 Ga0105245_10012826
234 Ga0105243_10062983
235 Ga0105242_10017930
236 Ga0105242_10042183
237 Ga0105239_10070911
238 Ga0157373_10000119
239 Ga0157371_10009418
240 Ga0157372_10000459
241 Ga0157372_10001216
242 Ga0163163_10012079
243 Ga0163163_10063287
244 Ga0157376_10159038
245 Ga0206352_11065095
246 Ga0209026_1000619
247 Ga0207697_10035959
248 Ga0207642_10006900
249 Ga0207699_10021295
250 Ga0207699_10049219
251 Ga0207643_10066340
252 Ga0207695_10000042
253 Ga0207693_10059422
254 Ga0207649_10022736
255 Ga0207652_10041360
256 Ga0207681_10018092
257 Ga0207681_10084847
258 Ga0207650_10037965
259 Ga0207659_10023351
260 Ga0207687_10002124
261 Ga0207664_10064986
262 Ga0207690_10002593
263 Ga0207686_10007486
264 Ga0207686_10018929
265 Ga0207709_10030360
266 Ga0207709_10033379
267 Ga0207691_10008442
268 Ga0207691_10111106
269 Ga0207691_10118432
270 Ga0207661_10048159
271 Ga0207703_10045548
272 Ga0207678_10036734
273 Ga0207708_10005254
274 Ga0207648_10005405
275 Ga0207648_10010990
276 Ga0207676_10029401
277 Ga0207674_10065876
278 Ga0207674_10224228
279 Ga0207675_100035785
280 Ga0207675_100160690
281 Ga0207683_10055705
282 Ga0268264_10002831
283 Ga0307515_10003049
284 Ga0265327_10000117
285 Ga0265327_10008261
286 Ga0265327_10019018
287 Ga0307509_10040159
288 Ga0373931_0070435
289 Ga0373947_0051790
290 Ga0373925_0083255
291 Ga0466972_0000095
292 Ga0466972_0010346
293 Ga0466965_0007478
294 Ga0466968_0000908
295 Ga0466960_0001723
296 Ga0451576_0009411
297 Ga0495603_0028977
298 Ga0495653_0122205
299 Ga0495650_0000119
300 Ga0495580_0042660
301 Ga0495582_0028314
302 Ga0495606_0000008
303 Ga0495606_0019341
304 Ga0495628_0003293
305 Ga0495630_0015047
306 Ga0495586_0063359
307 Ga0495667_0065689
308 Ga0495658_0004991
309 Ga0495687_002537
310 Ga0495684_0010900
311 Ga0496101_0047323
312 Ga0496101_0073884
313 Ga0496102_0045724
314 Ga0496103_0043497
315 Ga0496104_0019013
316 Ga0496104_0037081
317 Ga0496105_0053564
318 Ga0496108_0010570
319 Ga0496108_0198165
320 Ga0496110_0027284
321 Ga0496110_0029812
322 Ga0496111_0045003
323 Ga0496111_0132998
324 Ga0496111_0236382
325 Ga0496112_0000790
326 Ga0496112_0023717
327 Ga0496112_0030303
328 Ga0496112_0039419
329 Ga0496115_0061850
330 Ga0496115_0216690
331 Ga0501033_0011945
332 Ga0501036_0167125
333 Ga0501043_0091676
334 Ga0501046_0083131
335 Ga0501047_0014264
336 Ga0501048_0052636
337 Ga0501069_0014151
338 Ga0501070_0000066
339 Ga0501070_0031827
340 Ga0501080_0000901
341 Ga0501080_0131236
342 Ga0501044_0016097
343 nmdc:mga0yw44_31962_c1
344 nmdc:mga06z11_12712_c1
345 nmdc:mga0qj67_82854_c1
346 nmdc:mga0n895_116938_c1
347 nmdc:mga0n895_8433_c1
348 Ga0495619_0008634
349 Ga0495619_0051490
350 Ga0495619_0067380
351 Ga0500566_0003388
352 2932088209

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00909

Ammonium_transp

Ammonium Transporter Family

93

503

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2b2f-assembly1.cif.gz_A ammonium transporter amt-1 from a.fulgidus (native) 0.9365 70 510
2b2f-assembly1.cif.gz_A ammonium transporter amt-1 from a.fulgidus (native) 0.9273 70 510
3c1h-assembly1.cif.gz_A substrate binding, deprotonation and selectivity at the periplasmic entrance of the e. coli ammonia channel amtb 0.9187 70 490
2npc-assembly1.cif.gz_A an unusual twin-his arrangement in the pore of ammonia channels is essential for substrate conductance 0.916 70 490
2npd-assembly1.cif.gz_A an unusual twin-his arrangement in the pore of ammonia channels is essential for substrate conductance 0.9159 70 490
ID Description Score Start End Superfamily
2b2hA00 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.936 70 510 1.10.3430.10
2b2hA00 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.9267 70 510 1.10.3430.10
af_Q2FWL9_1_414_1.10.3430.10 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.9181 72 525 1.10.3430.10
af_Q9VFA9_21_443_1.10.3430.10 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.9168 72 513 1.10.3430.10
2npdA00 Mainly Alpha;Orthogonal Bundle;Ammonium transporter fold;Ammonium transporter AmtB like domains 0.9159 70 490 1.10.3430.10
ID Description Score Start End GO Terms
AF-A0A1F4TRZ6-F1-model_v4 Ammonium transporter 0.9505 65 512 GO:0005886
GO:0008519
GO:0097272
AF-A0A3D4YR75-F1-model_v4 Ammonium transporter 0.9493 164 428 GO:0005886
GO:0008519
GO:0097272
AF-A0A532UW24-F1-model_v4 Ammonium transporter 0.9492 87 512 GO:0005886
GO:0008519
GO:0097272
AF-A0A2W4ID03-F1-model_v4 Ammonium transporter 0.9455 65 514 GO:0005886
GO:0008519
GO:0097272
AF-A0A372JKL6-F1-model_v4 Ammonium transporter 0.9453 70 503 GO:0005886
GO:0008519

Map