F267487

General Info

Members Datasets Scaffolds Average Seq Length
176 135 352 275

Family's Representative Sequence

Representative Sequence 3300003320|rootH2_10165983|rootH2_101659832
Length 318
Sequence VQGGRNPGLLRLDGPERVREARDMQLSDHAVVAVVGAGQMGAGIAQVLAQFGYSVLLSDVSLERAQAGKHGIEKALTRLVDKGKLEAALRDSTLSRIAPTTADAAYPRCDLVIEAASENRELKLELFARADALTRPHVILASNTSSISITALAGHTKRPAQVVGMHFMNPVPVMKLVEVVRGLQTSEETVATIRELGQRLGRQLVFSQDRPGFLINRILIPPLNEACFALEEGTGSAEDIDRGARLGLNHPMGPFELADLIGLDTVLSIAEVLEREFGDSKYRPAVLLRNLVAAGWLGKKTGRGFYRYDEKGVKVGGT

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
26 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
27 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
28 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
29 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
44 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
45 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
46 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
49 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
50 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
51 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
52 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
53 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
54 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
55 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
56 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
57 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
58 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
61 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
64 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
65 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
66 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
67 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
68 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
79 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
80 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
81 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
82 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
83 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
84 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
85 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
86 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
87 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
88 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
89 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
90 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
91 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
92 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
93 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
96 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
101 3300049529 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
102 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
103 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
119 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
120 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
121 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
122 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
123 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
124 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
125 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
126 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
131 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
132 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
133 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
134 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
135 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.73
Metatranscriptomes 2.27
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.98
Rhizosphere 90.91
Stem 0
Stem Tuber 0
Unclassified 1.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10165983 3300003320 Bacteria 1260
2 rootH1_10004331 3300003323 Bacteria 4089
3 JGI25407J50210_10007961 3300003373 Bacteria 2664
4 Ga0070658_10150545 3300005327 Bacteria 1948
5 Ga0070683_100007726 3300005329 Bacteria 9104
6 Ga0070680_100054787 3300005336 Bacteria 3257
7 Ga0068868_100291192 3300005338 Bacteria 1384
8 Ga0070661_100053105 3300005344 Bacteria 2966
9 Ga0070709_10000503 3300005434 Bacteria 23074
10 Ga0070713_100034724 3300005436 Bacteria 4054
11 Ga0070699_100069481 3300005518 Bacteria 3061
12 Ga0070684_100013803 3300005535 Bacteria 6522
13 Ga0070697_100026577 3300005536 Bacteria 4626
14 Ga0070696_100006180 3300005546 Bacteria 8004
15 Ga0068855_100000124 3300005563 Bacteria 96975
16 Ga0068855_100007249 3300005563 Bacteria 13445
17 Ga0081538_10000358 3300005981 Bacteria 51878
18 Ga0081538_10000618 3300005981 Bacteria 39485
19 Ga0081538_10004891 3300005981 Bacteria 12197
20 Ga0070717_10010226 3300006028 Bacteria 7069
21 Ga0075428_100210273 3300006844 Bacteria 2102
22 Ga0105240_10642894 3300009093 Bacteria 1164
23 Ga0105245_10023515 3300009098 Bacteria 5410
24 Ga0105249_10000090 3300009553 Bacteria 127963
25 Ga0105239_10573943 3300010375 Bacteria 1285
26 Ga0157373_10004905 3300013100 Bacteria 10074
27 Ga0157369_10544368 3300013105 Bacteria 1200
28 Ga0157378_10538131 3300013297 Bacteria 1172
29 Ga0157372_10046838 3300013307 Bacteria 4801
30 Ga0157372_10056226 3300013307 Bacteria 4396
31 Ga0157372_10199800 3300013307 Bacteria 2316
32 Ga0157375_10077138 3300013308 Bacteria 3361
33 Ga0157376_10485523 3300014969 Bacteria 1211
34 Ga0207699_10000192 3300025906 Bacteria 36945
35 Ga0207699_10009304 3300025906 Bacteria 4887
36 Ga0207707_10002262 3300025912 Bacteria 17417
37 Ga0207695_10002366 3300025913 Bacteria 28013
38 Ga0207660_10001297 3300025917 Bacteria 16689
39 Ga0207649_10003049 3300025920 Bacteria 9220
40 Ga0207652_10002142 3300025921 Bacteria 16930
41 Ga0207646_10025137 3300025922 Bacteria 5451
42 Ga0207700_10037136 3300025928 Bacteria 3525
43 Ga0207700_10172750 3300025928 Bacteria 1804
44 Ga0207665_10030606 3300025939 Bacteria 3559
45 Ga0207661_10008194 3300025944 Bacteria 7459
46 Ga0207667_10000168 3300025949 Bacteria 97016
47 Ga0207667_10043059 3300025949 Bacteria 4793
48 Ga0207712_10000612 3300025961 Bacteria 28259
49 Ga0207640_10000743 3300025981 Bacteria 18743
50 Ga0207702_10307997 3300026078 Bacteria 1505
51 Ga0265319_1012975 3300028563 Bacteria 3338
52 Ga0265334_10000492 3300028573 Bacteria 20354
53 Ga0265318_10000429 3300028577 Bacteria 31981
54 Ga0307515_10187612 3300028794 Bacteria 1991
55 Ga0265338_10003836 3300028800 Bacteria 20883
56 Ga0265338_10004796 3300028800 Bacteria 18073
57 Ga0265338_10088004 3300028800 Bacteria 2579
58 Ga0265324_10014297 3300029957 Unclassified 2941
59 Ga0265324_10014425 3300029957 Bacteria 2925
60 Ga0265330_10000760 3300031235 Bacteria 20237
61 Ga0265332_10004181 3300031238 Bacteria 6842
62 Ga0265328_10000357 3300031239 Bacteria 21493
63 Ga0265328_10068117 3300031239 Bacteria 1307
64 Ga0265320_10013648 3300031240 Bacteria 4661
65 Ga0265325_10001666 3300031241 Bacteria 15416
66 Ga0265329_10008571 3300031242 Bacteria 3868
67 Ga0265340_10042671 3300031247 Bacteria 2225
68 Ga0265339_10000252 3300031249 Bacteria 43149
69 Ga0265339_10003759 3300031249 Bacteria 10585
70 Ga0265331_10003642 3300031250 Bacteria 9840
71 Ga0265327_10071602 3300031251 Bacteria 1733
72 Ga0265316_10005457 3300031344 Bacteria 12345
73 Ga0265316_10056403 3300031344 Unclassified 3068
74 Ga0265316_10066855 3300031344 Bacteria 2780
75 Ga0265313_10002251 3300031595 Bacteria 16966
76 Ga0307508_10003367 3300031616 Bacteria 16209
77 Ga0265314_10001270 3300031711 Bacteria 28727
78 Ga0265314_10009413 3300031711 Bacteria 8240
79 Ga0265342_10027464 3300031712 Unclassified 3556
80 Ga0307516_10023344 3300031730 Bacteria 6343
81 Ga0307406_10016318 3300031901 Bacteria 4315
82 Ga0307407_10019044 3300031903 Bacteria 3488
83 Ga0307416_100039113 3300032002 Bacteria 3668
84 Ga0307411_10047245 3300032005 Bacteria 2782
85 Ga0395900_0145496 3300037418 Bacteria 2423
86 Ga0395898_0007872 3300037466 Bacteria 11305
87 Ga0395905_0008968 3300037471 Bacteria 9815
88 Ga0395901_0004308 3300038443 Bacteria 14358
89 Ga0395901_0262037 3300038443 Bacteria 1799
90 Ga0451807_1214814 3300041486 Bacteria 10937
91 Ga0451577_0549929 3300042876 Bacteria 1048
92 Ga0453683_0001757 3300044673 Bacteria 17975
93 Ga0453683_0020807 3300044673 Bacteria 4191
94 Ga0453683_0081557 3300044673 Bacteria 2026
95 Ga0466968_0087869 3300044735 Bacteria 1373
96 Ga0451576_0029406 3300045051 Bacteria 5880
97 Ga0495629_0243338 3300046459 Bacteria 1238
98 Ga0495653_0104278 3300046463 Bacteria 2049
99 Ga0495580_0001755 3300046472 Bacteria 19061
100 Ga0495580_0181377 3300046472 Bacteria 1454
101 Ga0495582_0228195 3300046473 Bacteria 1066
102 Ga0495628_0132956 3300046516 Bacteria 1902
103 Ga0495630_0232028 3300046517 Bacteria 1410
104 Ga0495630_0301807 3300046517 Bacteria 1224
105 Ga0495645_0053813 3300046543 Bacteria 2925
106 Ga0495667_0015771 3300046559 Bacteria 5109
107 Ga0495646_0122237 3300046680 Bacteria 1472
108 Ga0495613_0245633 3300046689 Bacteria 1250
109 Ga0495674_0059728 3300047319 Bacteria 3329
110 Ga0495676_0234310 3300047321 Bacteria 1260
111 Ga0495680_0067513 3300047322 Bacteria 2734
112 Ga0495684_0015411 3300047471 Bacteria 5883
113 Ga0495593_0224690 3300047673 Bacteria 942
114 Ga0496100_0082829 3300048903 Bacteria 2170
115 Ga0496101_0016401 3300048904 Bacteria 5004
116 Ga0496101_0536058 3300048904 Bacteria 925
117 Ga0496110_0127811 3300048913 Bacteria 2293
118 Ga0496114_0044401 3300048917 Bacteria 3687
119 Ga0496115_0338245 3300048918 Bacteria 1229
120 Ga0496125_0001548 3300048928 Bacteria 32829
121 Ga0496125_0010088 3300048928 Bacteria 9583
122 Ga0496126_0394010 3300048929 Bacteria 1125
123 Ga0496126_0485947 3300048929 Bacteria 989
124 Ga0501311_010368 3300049527 Eukaryota 1129
125 Ga0501313_005306 3300049529 Eukaryota 1356
126 Ga0501316_008378 3300049532 Eukaryota 1141
127 Ga0501031_0019276 3300049568 Bacteria 4442
128 Ga0501032_0161707 3300049569 Bacteria 1470
129 Ga0501034_0004905 3300049571 Bacteria 14744
130 Ga0501036_0007701 3300049572 Bacteria 8797
131 Ga0501037_0117842 3300049573 Bacteria 1910
132 Ga0501038_0092129 3300049574 Bacteria 2538
133 Ga0501039_0008689 3300049575 Bacteria 7736
134 Ga0501039_0021472 3300049575 Bacteria 4952
135 Ga0501040_0003502 3300049576 Bacteria 10137
136 Ga0501040_0052265 3300049576 Bacteria 2796
137 Ga0501041_0001451 3300049577 Bacteria 13101
138 Ga0501041_0001905 3300049577 Bacteria 11695
139 Ga0501042_0015416 3300049578 Bacteria 5233
140 Ga0501042_0048295 3300049578 Bacteria 3034
141 Ga0501046_0023429 3300049580 Bacteria 5079
142 Ga0501046_0033441 3300049580 Bacteria 4154
143 Ga0501047_0016746 3300049581 Bacteria 7003
144 Ga0501048_0007053 3300049582 Bacteria 8535
145 Ga0501048_0013726 3300049582 Bacteria 6009
146 Ga0501068_0043057 3300049584 Bacteria 2715
147 Ga0501071_0004349 3300049587 Bacteria 8986
148 Ga0501072_0004115 3300049588 Bacteria 11009
149 Ga0501072_0172407 3300049588 Bacteria 1726
150 Ga0501074_0024555 3300049590 Bacteria 4380
151 Ga0501074_0068947 3300049590 Bacteria 2542
152 Ga0501075_0005608 3300049591 Bacteria 8584
153 Ga0501076_0001558 3300049592 Bacteria 15353
154 Ga0501076_0002281 3300049592 Bacteria 13119
155 Ga0501077_0003821 3300049593 Bacteria 9075
156 Ga0501077_0013716 3300049593 Bacteria 5079
157 Ga0501079_0001249 3300049741 Bacteria 17835
158 Ga0501079_0080657 3300049741 Bacteria 2516
159 Ga0501080_0540523 3300049742 Bacteria 1038
160 Ga0501081_0006237 3300049743 Bacteria 7730
161 Ga0501081_0011046 3300049743 Bacteria 5904
162 Ga0501083_0067162 3300049744 Bacteria 2387
163 Ga0501035_0042175 3300049822 Bacteria 4117
164 Ga0501045_0002642 3300049824 Bacteria 12213
165 Ga0501045_0003382 3300049824 Bacteria 10921
166 nmdc:mga0qj67_40588_c1 3300050509 Bacteria 3657
167 nmdc:mga0a205_284081_c1 3300050515 Bacteria 1530
168 Ga0495619_0082751 3300053085 Bacteria 2164
169 Ga0501084_0002324 3300054114 Bacteria 15265
170 Ga0501084_0002695 3300054114 Bacteria 14298
171 Ga0501084_0037877 3300054114 Bacteria 4030
172 Ga0501084_0181694 3300054114 Bacteria 1776
173 Ga0587111_0029111 3300060346 Eukaryota 1117
174 Ga0501082_0012753 3300060353 Bacteria 7222
175 Ga0530510_0002232 3300061734 Bacteria 13289
176 Ga0530510_0058236 3300061734 Bacteria 2793
177 rootH2_10165983
178 rootH1_10004331
179 JGI25407J50210_10007961
180 Ga0070658_10150545
181 Ga0070683_100007726
182 Ga0070680_100054787
183 Ga0068868_100291192
184 Ga0070661_100053105
185 Ga0070709_10000503
186 Ga0070713_100034724
187 Ga0070699_100069481
188 Ga0070684_100013803
189 Ga0070697_100026577
190 Ga0070696_100006180
191 Ga0068855_100000124
192 Ga0068855_100007249
193 Ga0081538_10000358
194 Ga0081538_10000618
195 Ga0081538_10004891
196 Ga0070717_10010226
197 Ga0075428_100210273
198 Ga0105240_10642894
199 Ga0105245_10023515
200 Ga0105249_10000090
201 Ga0105239_10573943
202 Ga0157373_10004905
203 Ga0157369_10544368
204 Ga0157378_10538131
205 Ga0157372_10046838
206 Ga0157372_10056226
207 Ga0157372_10199800
208 Ga0157375_10077138
209 Ga0157376_10485523
210 Ga0207699_10000192
211 Ga0207699_10009304
212 Ga0207707_10002262
213 Ga0207695_10002366
214 Ga0207660_10001297
215 Ga0207649_10003049
216 Ga0207652_10002142
217 Ga0207646_10025137
218 Ga0207700_10037136
219 Ga0207700_10172750
220 Ga0207665_10030606
221 Ga0207661_10008194
222 Ga0207667_10000168
223 Ga0207667_10043059
224 Ga0207712_10000612
225 Ga0207640_10000743
226 Ga0207702_10307997
227 Ga0265319_1012975
228 Ga0265334_10000492
229 Ga0265318_10000429
230 Ga0307515_10187612
231 Ga0265338_10003836
232 Ga0265338_10004796
233 Ga0265338_10088004
234 Ga0265324_10014297
235 Ga0265324_10014425
236 Ga0265330_10000760
237 Ga0265332_10004181
238 Ga0265328_10000357
239 Ga0265328_10068117
240 Ga0265320_10013648
241 Ga0265325_10001666
242 Ga0265329_10008571
243 Ga0265340_10042671
244 Ga0265339_10000252
245 Ga0265339_10003759
246 Ga0265331_10003642
247 Ga0265327_10071602
248 Ga0265316_10005457
249 Ga0265316_10056403
250 Ga0265316_10066855
251 Ga0265313_10002251
252 Ga0307508_10003367
253 Ga0265314_10001270
254 Ga0265314_10009413
255 Ga0265342_10027464
256 Ga0307516_10023344
257 Ga0307406_10016318
258 Ga0307407_10019044
259 Ga0307416_100039113
260 Ga0307411_10047245
261 Ga0395900_0145496
262 Ga0395898_0007872
263 Ga0395905_0008968
264 Ga0395901_0004308
265 Ga0395901_0262037
266 Ga0451807_1214814
267 Ga0451577_0549929
268 Ga0453683_0001757
269 Ga0453683_0020807
270 Ga0453683_0081557
271 Ga0466968_0087869
272 Ga0451576_0029406
273 Ga0495629_0243338
274 Ga0495653_0104278
275 Ga0495580_0001755
276 Ga0495580_0181377
277 Ga0495582_0228195
278 Ga0495628_0132956
279 Ga0495630_0232028
280 Ga0495630_0301807
281 Ga0495645_0053813
282 Ga0495667_0015771
283 Ga0495646_0122237
284 Ga0495613_0245633
285 Ga0495674_0059728
286 Ga0495676_0234310
287 Ga0495680_0067513
288 Ga0495684_0015411
289 Ga0495593_0224690
290 Ga0496100_0082829
291 Ga0496101_0016401
292 Ga0496101_0536058
293 Ga0496110_0127811
294 Ga0496114_0044401
295 Ga0496115_0338245
296 Ga0496125_0001548
297 Ga0496125_0010088
298 Ga0496126_0394010
299 Ga0496126_0485947
300 Ga0501311_010368
301 Ga0501313_005306
302 Ga0501316_008378
303 Ga0501031_0019276
304 Ga0501032_0161707
305 Ga0501034_0004905
306 Ga0501036_0007701
307 Ga0501037_0117842
308 Ga0501038_0092129
309 Ga0501039_0008689
310 Ga0501039_0021472
311 Ga0501040_0003502
312 Ga0501040_0052265
313 Ga0501041_0001451
314 Ga0501041_0001905
315 Ga0501042_0015416
316 Ga0501042_0048295
317 Ga0501046_0023429
318 Ga0501046_0033441
319 Ga0501047_0016746
320 Ga0501048_0007053
321 Ga0501048_0013726
322 Ga0501068_0043057
323 Ga0501071_0004349
324 Ga0501072_0004115
325 Ga0501072_0172407
326 Ga0501074_0024555
327 Ga0501074_0068947
328 Ga0501075_0005608
329 Ga0501076_0001558
330 Ga0501076_0002281
331 Ga0501077_0003821
332 Ga0501077_0013716
333 Ga0501079_0001249
334 Ga0501079_0080657
335 Ga0501080_0540523
336 Ga0501081_0006237
337 Ga0501081_0011046
338 Ga0501083_0067162
339 Ga0501035_0042175
340 Ga0501045_0002642
341 Ga0501045_0003382
342 nmdc:mga0qj67_40588_c1
343 nmdc:mga0a205_284081_c1
344 Ga0495619_0082751
345 Ga0501084_0002324
346 Ga0501084_0002695
347 Ga0501084_0037877
348 Ga0501084_0181694
349 Ga0587111_0029111
350 Ga0501082_0012753
351 Ga0530510_0002232
352 Ga0530510_0058236

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00725

3HCDH

3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

212

308

1

PF02737

3HCDH_N

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

31

210

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
4j36-assembly1.cif.gz_A cocrystal structure of kynurenine 3-monooxygenase in complex with upf 648 inhibitor(kmo-394upf) 1.009 31 59
4j33-assembly2.cif.gz_B crystal structure of kynurenine 3-monooxygenase (kmo-394) 1.006 30 59
4j31-assembly1.cif.gz_A crystal structure of kynurenine 3-monooxygenase (kmo-396prot) 1.001 30 59
4j34-assembly1.cif.gz_A crystal structure of kynurenine 3-monooxygenase - truncated at position 394 plus his tag cleaved. 1 30 59
4j36-assembly2.cif.gz_B cocrystal structure of kynurenine 3-monooxygenase in complex with upf 648 inhibitor(kmo-394upf) 0.9985 29 59
ID Description Score Start End Superfamily
4j36B00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9985 29 59 3.50.50.60
4kueB02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9978 220 304 1.10.1040.10
4kuhF02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9965 220 304 1.10.1040.10
4kueA02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9963 220 304 1.10.1040.10
6acqA02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9945 220 304 1.10.1040.10
ID Description Score Start End GO Terms
AF-H9V6S3-F1-model_v4 3-hydroxyacyl-CoA dehydrogenase C-terminal domain-containing protein 0.9975 215 310 GO:0006631
GO:0016616
AF-A0A0C9T8E5-F1-model_v4 3-hydroxyacyl-CoA dehydrogenase C-terminal domain-containing protein 0.9958 221 310 GO:0006631
GO:0016616
AF-A0A656TFL7-F1-model_v4 deleted 0.9923 221 309
AF-A0A2V8F207-F1-model_v4 3-hydroxybutyryl-CoA dehydrogenase 0.9899 209 309 GO:0003857
GO:0006635
AF-A0A831UGL6-F1-model_v4 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) 0.989 205 316 GO:0006635
GO:0008691

Map