F267323

General Info

Members Datasets Scaffolds Average Seq Length
175 155 350 975

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2784746763|2785343287
Length 1175
Sequence GETRAGSGSGPAAERPAAAARSTAERHSSRPVTTAGRRSARSDAAAGLRAALTAAVRGEVAFDTTARALMTMDASNYRRVPLGVVAPRDADDVAAVLTVCREHGVPVVARGGGTSIAGQATGTGVVLDFTRHMNRLLALDPEARTAVVQPGLVLDRLQDAAAPHGLRFGPDPSTHSRCTLGGMIGNNSCGSHSVAWGTTADSVRELSVLDGRGGARRPGQGWSGAPDGLRALVEGELALLRTGFPDLPRRISGYALDALLPERGADVARAFCGSEGTLGVLTEAVVRLVEAPRARALAVLGYADESAAAEAAPALLPYGPLTVEGMAADLVPPGTPGLPAGGAWLFVETGGDTAAEARAHAAAIVRAADAADALVVTDPAAQRALWRVREDASGTATRMPDGSEAWPGWEDCAVPPARLGAYLRDFRGLLRAHELRGTPYGHFGDGCIHVRIDFDLLTGPGVARFRRFSEDLADLVVSHGGSLSGEHGDGQARAELLPRMYGPDLIALFERAKALWDPDDLLNPGMLVRPAPLDTNLRFAPLPREPVPVVFGYPEDGGDFSAAVRRCVGVAKCRTTGPGPGSGAVMCPSFRATGEEEHSTRGRARLLHEMLAGEVITDGWRSPEVRDALDLCLSCKGCRSDCPVGVDMATYKAEFLHHHYAGRRRPAAHYTMGRLPVWLHLIARTRTAGLVNLLAGVVPLAGLAKRLGGIAGERDLPRLATVPFSRWYRGWAGQRDAGVEREEGVGPDDGAEWVEGVGPDEGVERVEGVGPDEGVEWVEWGERDRPEARAPRWGPRQVLRPPRPEQLAAGTLDEAGLRAGDEAEHGAGDEAEHGAGDEAGLRMGDGAGLRAEAEAGLPAGAEDGERDGDGGDVYGRPPATVLLWTDTFTEYLSPSVGRAALRVLEAAGLEVIVPPTPRTRRKPAWLKRRRASREPDPAQGGPARTPFTSRKGRLCCGLTYISTGQLDEARAVLRRTLDLLDPFLAPAPASSAPEAALEAGPELAPPGLPLVVLEPSCAATLRSDLPELLHDDPRAARVAASVVTFAEALERYAPGWTPPALDRPVVGQTHCHQHAVLGDTPDRRLRAAAGLTGDLSGGCCGLAGNFGFEKGHYEVSVACAEEQLLPAVRAATEDTLILADGFSCRTQLEHLAGRRGAHLAEVLADGLDRGERGEG

Samples

Sample ID Description Type Environment
1 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
4 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
5 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
6 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
7 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
8 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
9 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
10 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
11 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
12 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
13 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
14 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
15 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
18 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
19 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
20 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
21 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
22 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
23 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
24 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
25 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
26 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
27 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
28 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
29 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
30 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
31 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
32 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
33 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
34 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
35 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
36 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
37 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
38 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
39 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
40 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
41 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
42 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
43 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
44 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
45 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
46 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
47 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
48 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
49 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
50 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
51 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
52 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
53 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
54 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
55 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
56 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
57 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
58 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
59 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
60 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
61 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
62 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
63 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
64 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
65 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
66 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
67 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
68 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
69 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
70 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
71 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
72 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
73 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
74 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
75 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
76 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
77 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
78 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
79 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
80 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
90 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
93 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
94 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
95 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
96 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
97 2582580736 Prauserella sp. Am3 Isolate Unclassified
98 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
99 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
100 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
101 2643221578 Streptomyces sp. Root63 Isolate Unclassified
102 2643221647 Streptomyces sp. Root369 Isolate Unclassified
103 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
104 2643221714 Streptomyces sp. Root264 Isolate Unclassified
105 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
106 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
107 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
108 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
109 2808606448 Streptomyces sp. 193411 Isolate Unclassified
110 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
111 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
112 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
113 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
114 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
115 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
116 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
117 2862574272 Streptomyces sp. AcE210 Isolate Nodule
118 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
119 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
120 2867369537 Streptomyces sp. Z26 Isolate Unclassified
121 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
122 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
123 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
124 2904434214 Robbsia andropogonis 1567 Isolate Rhizosphere
125 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
126 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
127 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
128 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
129 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
130 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
131 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
132 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
133 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
134 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
135 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
136 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
137 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
138 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
139 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
140 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
141 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
142 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
143 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
144 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
145 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
146 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
147 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
148 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
149 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
150 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
151 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
152 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
153 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
154 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
155 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 65.14
Metatranscriptomes 0
Isolates 34.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4
Nodule 0.57
Rhizoplane 1.14
Rhizosphere 69.14
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055529_1000682 3300003763 Bacteria 23312
2 Ga0065704_10070315 3300005289 Bacteria 34355
3 Ga0070717_10027960 3300006028 Bacteria 4510
4 Ga0075367_10006224 3300006178 Bacteria 6013
5 Ga0075435_100026149 3300007076 Bacteria 4551
6 Ga0105250_10000502 3300009092 Bacteria 27455
7 Ga0114129_10043418 3300009147 Bacteria 6325
8 Ga0105246_10002305 3300011119 Bacteria 11521
9 Ga0182008_10022994 3300014497 Bacteria 3189
10 Ga0182007_10000488 3300015262 Bacteria 23798
11 Ga0213875_10001012 3300021388 Bacteria 19955
12 Ga0209455_1000390 3300025272 Bacteria 38471
13 Ga0209758_1004729 3300025297 Bacteria 11088
14 Ga0207426_1002624 3300025302 Bacteria 11141
15 Ga0207426_1003639 3300025302 Bacteria 8150
16 Ga0207426_1003801 3300025302 Bacteria 7836
17 Ga0207696_1001725 3300025711 Bacteria 11345
18 Ga0207655_1000006 3300025728 Bacteria 861092
19 Ga0307515_10000732 3300028794 Bacteria 75720
20 Ga0265338_10000677 3300028800 Bacteria 58906
21 Ga0265338_10000854 3300028800 Bacteria 51511
22 Ga0307512_10035013 3300030522 Bacteria 4286
23 Ga0307509_10008482 3300031507 Bacteria 13086
24 Ga0307509_10034779 3300031507 Bacteria 5535
25 Ga0265313_10017654 3300031595 Bacteria 4041
26 Ga0307514_10003660 3300031649 Bacteria 14577
27 Ga0316576_10012678 3300031727 Bacteria 5575
28 Ga0307516_10002744 3300031730 Bacteria 23204
29 Ga0307507_10005078 3300033179 Bacteria 22158
30 Ga0307507_10033917 3300033179 Bacteria 5288
31 Ga0307510_10013098 3300033180 Bacteria 9837
32 Ga0307510_10026144 3300033180 Bacteria 6718
33 Ga0395900_0104584 3300037418 Bacteria 2908
34 Ga0436364_1549524 3300037853 Bacteria 28747
35 Ga0439457_000779 3300042014 Bacteria 9487
36 Ga0450894_000396 3300042131 Bacteria 7480
37 Ga0450906_000101 3300042145 Bacteria 14547
38 Ga0451577_0043004 3300042876 Bacteria 4048
39 Ga0466969_0001798 3300044656 Bacteria 11433
40 Ga0466966_0023405 3300044684 Bacteria 4045
41 Ga0466961_0005856 3300044693 Bacteria 7788
42 Ga0466961_0011549 3300044693 Bacteria 5647
43 Ga0466963_0007402 3300044694 Bacteria 6542
44 Ga0466970_0025266 3300044765 Bacteria 3109
45 Ga0466958_0000369 3300045836 Bacteria 18218
46 Ga0495603_0001078 3300046455 Bacteria 15811
47 Ga0495590_0009016 3300046457 Bacteria 3791
48 Ga0495629_0013688 3300046459 Bacteria 5853
49 Ga0495629_0019147 3300046459 Bacteria 4893
50 Ga0495638_0000894 3300046460 Bacteria 30486
51 Ga0495650_0002483 3300046471 Bacteria 14845
52 Ga0495650_0004644 3300046471 Bacteria 9298
53 Ga0495605_0000671 3300046474 Bacteria 25837
54 Ga0495664_0002039 3300046477 Bacteria 10801
55 Ga0495585_0005641 3300046492 Bacteria 7861
56 Ga0495583_0000086 3300046506 Bacteria 165176
57 Ga0495606_0001066 3300046507 Bacteria 39624
58 Ga0495620_0000006 3300046515 Bacteria 273098
59 Ga0495620_0007427 3300046515 Bacteria 5948
60 Ga0495620_0012032 3300046515 Bacteria 4490
61 Ga0495628_0027175 3300046516 Bacteria 4658
62 Ga0495632_0000031 3300046519 Bacteria 166613
63 Ga0495643_0000143 3300046522 Bacteria 114897
64 Ga0495648_0000267 3300046524 Bacteria 58885
65 Ga0495654_0000117 3300046530 Bacteria 89307
66 Ga0495640_0003386 3300046533 Bacteria 12832
67 Ga0495668_0008894 3300046616 Bacteria 6213
68 Ga0495635_0003071 3300046663 Bacteria 11487
69 Ga0495661_0003587 3300046665 Bacteria 11423
70 Ga0495657_0002272 3300046675 Bacteria 16229
71 Ga0495657_0003547 3300046675 Bacteria 12723
72 Ga0495646_0002800 3300046680 Bacteria 10787
73 Ga0495613_0002072 3300046689 Bacteria 15247
74 Ga0495613_0010210 3300046689 Bacteria 6976
75 Ga0495613_0013508 3300046689 Bacteria 6064
76 Ga0495671_0000085 3300046692 Bacteria 88500
77 Ga0495649_0004613 3300046694 Bacteria 8962
78 Ga0495589_0005487 3300046794 Bacteria 6689
79 Ga0495660_0000226 3300046810 Bacteria 55926
80 Ga0495581_0005860 3300047315 Bacteria 7123
81 Ga0495581_0019469 3300047315 Bacteria 3939
82 Ga0495604_0009852 3300047317 Bacteria 7561
83 Ga0495672_0000537 3300047320 Bacteria 42948
84 Ga0495687_019427 3300047443 Bacteria 3335
85 Ga0495685_004029 3300047447 Bacteria 4725
86 Ga0495685_005314 3300047447 Bacteria 4200
87 Ga0495681_0001110 3300047470 Bacteria 20415
88 Ga0495593_0000443 3300047673 Bacteria 23177
89 Ga0495602_0058771 3300048088 Bacteria 3364
90 Ga0495626_0006653 3300048091 Bacteria 6554
91 Ga0496100_0018343 3300048903 Bacteria 4149
92 Ga0496116_0017225 3300048919 Bacteria 5619
93 Ga0496117_0000492 3300048920 Bacteria 65349
94 Ga0496121_0013693 3300048924 Bacteria 8694
95 Ga0496124_0003049 3300048927 Bacteria 20888
96 Ga0501031_0018073 3300049568 Bacteria 4586
97 Ga0501033_0010224 3300049570 Bacteria 7201
98 Ga0501034_0064107 3300049571 Bacteria 3688
99 Ga0501037_0022503 3300049573 Bacteria 4662
100 Ga0501038_0008867 3300049574 Bacteria 9230
101 Ga0501038_0016606 3300049574 Bacteria 6674
102 Ga0501040_0021096 3300049576 Bacteria 4344
103 Ga0501042_0011540 3300049578 Bacteria 5966
104 Ga0501047_0026706 3300049581 Bacteria 5557
105 Ga0501047_0042152 3300049581 Bacteria 4411
106 Ga0501048_0019999 3300049582 Bacteria 4910
107 Ga0501075_0008713 3300049591 Bacteria 7072
108 Ga0501035_0014904 3300049822 Bacteria 7172
109 Ga0501035_0032125 3300049822 Bacteria 4777
110 Ga0501044_0038974 3300049823 Bacteria 4961
111 Ga0501045_0072558 3300049824 Bacteria 2534
112 Ga0501084_0001692 3300054114 Bacteria 17523
113 Ga0466962_0003458 3300061719 Bacteria 7529
114 Ga0466962_0007674 3300061719 Bacteria 5169
115 2785343287 2784746763 Bacteria 9783172
116 2547408132 2547132111 Bacteria 8013147
117 2583150309 2582580736 Bacteria 5325865
118 2585308804 2582581313 Bacteria 10042643
119 2585313501 2582581314 Bacteria 11452267
120 2616695059 2616644814 Bacteria 11555299
121 2643902623 2643221578 Bacteria 9213798
122 2644262288 2643221647 Bacteria 10741251
123 2644404869 2643221673 Bacteria 9196637
124 2644628914 2643221714 Bacteria 9015452
125 2785369514 2784746768 Bacteria 10036182
126 2786670618 2786546132 Bacteria 10419719
127 2793979714 2791355406 Bacteria 11364898
128 2808920586 2808606375 Bacteria 9466072
129 2809232197 2808606448 Bacteria 8656184
130 2812358095 2811994879 Bacteria 9313447
131 2812480515 2811994917 Bacteria 7761064
132 2816509516 2816332139 Bacteria 9138787
133 2852636660 2852635781 Bacteria 8251373
134 2862180161 2862178590 Bacteria 8583590
135 2862285667 2862281513 Bacteria 9621493
136 2862511804 2862507626 Bacteria 9425308
137 2862579240 2862574272 Bacteria 10567477
138 2863404595 2863404153 Bacteria 9672205
139 2867348792 2867346516 Bacteria 7608576
140 2867371899 2867369537 Bacteria 6501581
141 2877681097 2877676314 Bacteria 9512378
142 2884698731 2884693830 Bacteria 11273186
143 2895451313 2895442618 Bacteria 11027144
144 2904437817 2904434214 Bacteria 6230908
145 2912724332 2912723979 Bacteria 8557534
146 2917744457 2917736166 Bacteria 9690793
147 2946048851 2946045630 Bacteria 8527308
148 2946067750 2946064051 Bacteria 8957905
149 2947229216 2947224130 Bacteria 9938529
150 2954386226 2954380949 Bacteria 10050426
151 2954676939 2954673503 Bacteria 9685905
152 2954687219 2954682443 Bacteria 9862841
153 2954696864 2954691527 Bacteria 10720516
154 2954705272 2954701450 Bacteria 10834262
155 2954716237 2954711539 Bacteria 10867210
156 2954735631 2954731030 Bacteria 10243860
157 2954745105 2954740390 Bacteria 10229294
158 2954754486 2954749733 Bacteria 10366972
159 2990060740 2990059506 Bacteria 9321252
160 2997457819 2997451912 Bacteria 8492419
161 2997600396 2997600082 Bacteria 9896405
162 3006325034 3006321560 Bacteria 8247479
163 3006500774 3006493962 Bacteria 8825450
164 8008578874 8008574985 Bacteria 7815457
165 8023630166 8023623736 Bacteria 8593882
166 8025480348 8025478263 Bacteria 8209203
167 8047898091 8047893842 Bacteria 11723082
168 8048360802 8048356638 Bacteria 11044339
169 8048375054 8048369669 Bacteria 11666822
170 8048383152 8048379754 Bacteria 11877923
171 8048412737 8048406513 Bacteria 8936924
172 8053951286 8053945823 Bacteria 8962862
173 8056065303 8056060235 Bacteria 7259403
174 8056669629 8056667051 Bacteria 6953971
175 8056831684 8056829672 Bacteria 9045328
176 Ga0055529_1000682
177 Ga0065704_10070315
178 Ga0070717_10027960
179 Ga0075367_10006224
180 Ga0075435_100026149
181 Ga0105250_10000502
182 Ga0114129_10043418
183 Ga0105246_10002305
184 Ga0182008_10022994
185 Ga0182007_10000488
186 Ga0213875_10001012
187 Ga0209455_1000390
188 Ga0209758_1004729
189 Ga0207426_1002624
190 Ga0207426_1003639
191 Ga0207426_1003801
192 Ga0207696_1001725
193 Ga0207655_1000006
194 Ga0307515_10000732
195 Ga0265338_10000677
196 Ga0265338_10000854
197 Ga0307512_10035013
198 Ga0307509_10008482
199 Ga0307509_10034779
200 Ga0265313_10017654
201 Ga0307514_10003660
202 Ga0316576_10012678
203 Ga0307516_10002744
204 Ga0307507_10005078
205 Ga0307507_10033917
206 Ga0307510_10013098
207 Ga0307510_10026144
208 Ga0395900_0104584
209 Ga0436364_1549524
210 Ga0439457_000779
211 Ga0450894_000396
212 Ga0450906_000101
213 Ga0451577_0043004
214 Ga0466969_0001798
215 Ga0466966_0023405
216 Ga0466961_0005856
217 Ga0466961_0011549
218 Ga0466963_0007402
219 Ga0466970_0025266
220 Ga0466958_0000369
221 Ga0495603_0001078
222 Ga0495590_0009016
223 Ga0495629_0013688
224 Ga0495629_0019147
225 Ga0495638_0000894
226 Ga0495650_0002483
227 Ga0495650_0004644
228 Ga0495605_0000671
229 Ga0495664_0002039
230 Ga0495585_0005641
231 Ga0495583_0000086
232 Ga0495606_0001066
233 Ga0495620_0000006
234 Ga0495620_0007427
235 Ga0495620_0012032
236 Ga0495628_0027175
237 Ga0495632_0000031
238 Ga0495643_0000143
239 Ga0495648_0000267
240 Ga0495654_0000117
241 Ga0495640_0003386
242 Ga0495668_0008894
243 Ga0495635_0003071
244 Ga0495661_0003587
245 Ga0495657_0002272
246 Ga0495657_0003547
247 Ga0495646_0002800
248 Ga0495613_0002072
249 Ga0495613_0010210
250 Ga0495613_0013508
251 Ga0495671_0000085
252 Ga0495649_0004613
253 Ga0495589_0005487
254 Ga0495660_0000226
255 Ga0495581_0005860
256 Ga0495581_0019469
257 Ga0495604_0009852
258 Ga0495672_0000537
259 Ga0495687_019427
260 Ga0495685_004029
261 Ga0495685_005314
262 Ga0495681_0001110
263 Ga0495593_0000443
264 Ga0495602_0058771
265 Ga0495626_0006653
266 Ga0496100_0018343
267 Ga0496116_0017225
268 Ga0496117_0000492
269 Ga0496121_0013693
270 Ga0496124_0003049
271 Ga0501031_0018073
272 Ga0501033_0010224
273 Ga0501034_0064107
274 Ga0501037_0022503
275 Ga0501038_0008867
276 Ga0501038_0016606
277 Ga0501040_0021096
278 Ga0501042_0011540
279 Ga0501047_0026706
280 Ga0501047_0042152
281 Ga0501048_0019999
282 Ga0501075_0008713
283 Ga0501035_0014904
284 Ga0501035_0032125
285 Ga0501044_0038974
286 Ga0501045_0072558
287 Ga0501084_0001692
288 Ga0466962_0003458
289 Ga0466962_0007674
290 2785343287
291 2547408132
292 2583150309
293 2585308804
294 2585313501
295 2616695059
296 2643902623
297 2644262288
298 2644404869
299 2644628914
300 2785369514
301 2786670618
302 2793979714
303 2808920586
304 2809232197
305 2812358095
306 2812480515
307 2816509516
308 2852636660
309 2862180161
310 2862285667
311 2862511804
312 2862579240
313 2863404595
314 2867348792
315 2867371899
316 2877681097
317 2884698731
318 2895451313
319 2904437817
320 2912724332
321 2917744457
322 2946048851
323 2946067750
324 2947229216
325 2954386226
326 2954676939
327 2954687219
328 2954696864
329 2954705272
330 2954716237
331 2954735631
332 2954745105
333 2954754486
334 2990060740
335 2997457819
336 2997600396
337 3006325034
338 3006500774
339 8008578874
340 8023630166
341 8025480348
342 8047898091
343 8048360802
344 8048375054
345 8048383152
346 8048412737
347 8053951286
348 8056065303
349 8056669629
350 8056831684

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01565

FAD_binding_4

FAD binding domain

81

217

0.98

PF02913

FAD-oxidase_C

FAD linked oxidases, C-terminal domain

291

527

0.93

PF13183

Fer4_8

4Fe-4S dicluster domain

563

646

0.82

PF13534

Fer4_17

4Fe-4S dicluster domain

566

647

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
8jdp-assembly1.cif.gz_A crystal structure of h405a mldhd in complex with d-2-hydroxyisovaleric acid 0.8707 19 521
8jdx-assembly1.cif.gz_A crystal structure of mldhd in complex with 2-ketoisovaleric acid 0.8691 19 521
8jdc-assembly1.cif.gz_A crystal structure of mldhd in apo form 0.8689 19 521
8jdo-assembly1.cif.gz_A crystal structure of h405a mldhd in complex with d-2-hydroxyhexanoic acid 0.8688 19 521
8jdu-assembly1.cif.gz_A crystal structure of mldhd in complex with 2-ketovaleric acid 0.8686 19 521
ID Description Score Start End Superfamily
af_Q4D224_129_228_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9414 110 188 3.30.465.10
af_P77748_420_500_3.30.70.2740 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9402 400 480 3.30.70.2740
af_P77748_420_500_3.30.70.2740 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9293 400 480 3.30.70.2740
af_P0A996_163_249_3.40.30.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.9166 734 819 3.40.30.10
af_P0AEP9_110_230_3.30.465.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3; 0.9006 106 277 3.30.465.10
ID Description Score Start End GO Terms
AF-A0A7V9S1Z8-F1-model_v4 FAD-binding oxidoreductase 0.9658 17 670 GO:0004458
GO:0008720
GO:0046872
GO:0051536
GO:0071949
GO:1903457
AF-A0A367F6P9-F1-model_v4 FAD-binding oxidoreductase 0.964 103 336 GO:0004458
GO:0008720
GO:0071949
GO:1903457
AF-A0A7X3RB48-F1-model_v4 FAD-binding oxidoreductase 0.9508 21 526 GO:0004458
GO:0008720
GO:0071949
GO:1903457
AF-A0A3M1IXV6-F1-model_v4 FAD-binding oxidoreductase 0.9504 13 194 GO:0004458
GO:0008720
GO:0071949
GO:1903457
AF-A0A2V8D287-F1-model_v4 FAD-binding oxidoreductase 0.9483 16 279 GO:0004458
GO:0008720
GO:0071949
GO:1903457

Map