F265143

General Info

Members Datasets Scaffolds Average Seq Length
174 129 348 225

Family's Representative Sequence

Representative Sequence 3300046516|Ga0495628_0151999|Ga0495628_0151999_112_894
Length 260
Sequence MTQSLTVRTFGVMTDTPTSHGERVAIITGASRGLGLALARDLAGKGWSLVLDARGGDSLTRVGAELGRRTTVVTITGDVVDEGHRRRLIAEAARLGRLELLVNNASVLGPSPQPALADYPLDELRHVYEVNVVAPLRLVQLALPLLDAAGGRVVNVTSDAAREPYTGWGGYGSSKAALEQLSNVLAAEHPELQVLWVDPGDMRTDLHQAAFPGEDISDRPPPESSVPGLLALLGRDTPSGRYRVEEVGEDAVAPSELVVT

Samples

Sample ID Description Type Environment
1 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
23 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
34 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
48 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
51 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
70 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
71 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
72 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
82 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
83 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
84 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
85 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
86 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
87 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
88 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
89 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
90 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
91 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
92 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
93 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
94 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
95 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
96 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
97 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
98 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
99 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
100 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
101 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
102 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
103 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
104 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
105 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
106 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
107 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
108 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
109 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
110 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
116 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
117 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
118 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
119 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
122 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
123 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
124 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
125 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
126 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
127 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
128 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
129 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.43
Metatranscriptomes 0.57
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 5.75
Rhizosphere 87.93
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495628_0151999 3300046516 Bacteria 1763
2 JGI25407J50210_10000692 3300003373 Bacteria 6993
3 Ga0070683_100172049 3300005329 Bacteria 2056
4 Ga0070689_100581852 3300005340 Bacteria 968
5 Ga0070687_100200655 3300005343 Bacteria 1208
6 Ga0070675_100455382 3300005354 Bacteria 1148
7 Ga0070674_100107938 3300005356 Bacteria 2039
8 Ga0070674_100503895 3300005356 Bacteria 1009
9 Ga0070688_100258229 3300005365 Bacteria 1243
10 Ga0070709_10066546 3300005434 Bacteria 2311
11 Ga0070714_100622555 3300005435 Bacteria 1038
12 Ga0070713_100037913 3300005436 Bacteria 3900
13 Ga0070700_100103596 3300005441 Bacteria 1879
14 Ga0070678_100078285 3300005456 Bacteria 2497
15 Ga0070698_100304395 3300005471 Bacteria 1525
16 Ga0070697_100159231 3300005536 Bacteria 1907
17 Ga0070672_100251194 3300005543 Bacteria 1490
18 Ga0070693_100500409 3300005547 Bacteria 862
19 Ga0070665_100224541 3300005548 Bacteria 1879
20 Ga0070664_100519490 3300005564 Bacteria 1099
21 Ga0068857_100278248 3300005577 Bacteria 1539
22 Ga0068864_100414569 3300005618 Bacteria 1282
23 Ga0068866_10063590 3300005718 Bacteria 1924
24 Ga0068870_10323909 3300005840 Bacteria 980
25 Ga0068863_100586865 3300005841 Bacteria 1102
26 Ga0081455_10004322 3300005937 Bacteria 15999
27 Ga0081538_10002074 3300005981 Bacteria 19975
28 Ga0081538_10017489 3300005981 Bacteria 5439
29 Ga0081538_10118246 3300005981 Bacteria 1281
30 Ga0070717_10597817 3300006028 Bacteria 1001
31 Ga0097621_100647586 3300006237 Bacteria 969
32 Ga0075431_100050765 3300006847 Bacteria 4276
33 Ga0075433_10061446 3300006852 Bacteria 3291
34 Ga0075433_10076593 3300006852 Bacteria 2945
35 Ga0075434_100036279 3300006871 Bacteria 4877
36 Ga0075434_100101050 3300006871 Bacteria 2890
37 Ga0068865_100222984 3300006881 Bacteria 1475
38 Ga0075436_100010868 3300006914 Bacteria 6247
39 Ga0075435_100014180 3300007076 Bacteria 5948
40 Ga0075435_100015443 3300007076 Bacteria 5740
41 Ga0111539_10012375 3300009094 Bacteria 10698
42 Ga0111539_10133553 3300009094 Bacteria 2906
43 Ga0111539_10508850 3300009094 Bacteria 1403
44 Ga0111539_11218406 3300009094 Bacteria 874
45 Ga0105245_10411097 3300009098 Bacteria 1354
46 Ga0114129_10127853 3300009147 Bacteria 3492
47 Ga0114129_10170099 3300009147 Bacteria 2971
48 Ga0105243_10018261 3300009148 Bacteria 5311
49 Ga0105248_10068679 3300009177 Bacteria 3979
50 Ga0105246_10009536 3300011119 Bacteria 5982
51 Ga0157378_10681120 3300013297 Bacteria 1046
52 Ga0157375_10131724 3300013308 Bacteria 2620
53 Ga0163163_10483128 3300014325 Bacteria 1300
54 Ga0157380_11214884 3300014326 Bacteria 798
55 Ga0157379_10739333 3300014968 Bacteria 925
56 Ga0157376_10046015 3300014969 Bacteria 3596
57 Ga0163161_10036398 3300017792 Bacteria 3525
58 Ga0197907_10484202 3300020069 Bacteria 838
59 Ga0213876_10195514 3300021384 Bacteria 1075
60 Ga0213875_10000363 3300021388 Bacteria 42235
61 Ga0213875_10000628 3300021388 Bacteria 28179
62 Ga0213875_10004456 3300021388 Bacteria 7681
63 Ga0207662_10558544 3300025918 Bacteria 793
64 Ga0207659_10476931 3300025926 Bacteria 1054
65 Ga0207687_10312097 3300025927 Bacteria 1270
66 Ga0207700_10000001 3300025928 Bacteria 1122509
67 Ga0207700_10000216 3300025928 Bacteria 34369
68 Ga0207700_10656356 3300025928 Bacteria 935
69 Ga0207664_10135904 3300025929 Bacteria 2074
70 Ga0207669_10617544 3300025937 Bacteria 883
71 Ga0207691_10049356 3300025940 Bacteria 3856
72 Ga0207711_10116985 3300025941 Bacteria 2377
73 Ga0207661_10223751 3300025944 Bacteria 1664
74 Ga0207661_10740226 3300025944 Bacteria 905
75 Ga0207679_10461110 3300025945 Bacteria 1128
76 Ga0207712_10238488 3300025961 Bacteria 1464
77 Ga0207678_10200163 3300026067 Bacteria 1708
78 Ga0207708_10061718 3300026075 Bacteria 2862
79 Ga0207641_10743052 3300026088 Bacteria 968
80 Ga0207676_10145384 3300026095 Bacteria 2036
81 Ga0207683_10158597 3300026121 Bacteria 2044
82 Ga0268266_10174985 3300028379 Bacteria 1950
83 Ga0268264_10176105 3300028381 Bacteria 1939
84 Ga0307406_10356017 3300031901 Bacteria 1146
85 Ga0373943_0007563 3300035170 Bacteria 4880
86 Ga0373946_0061547 3300035171 Bacteria 1599
87 Ga0373935_0271222 3300035692 Bacteria 1192
88 Ga0373925_0550728 3300037068 Bacteria 949
89 Ga0395899_0002678 3300037312 Bacteria 14361
90 Ga0395900_0025404 3300037418 Bacteria 6064
91 Ga0395900_0030269 3300037418 Bacteria 5556
92 Ga0395900_0089317 3300037418 Bacteria 3168
93 Ga0395900_0131294 3300037418 Bacteria 2567
94 Ga0395900_0153962 3300037418 Bacteria 2349
95 Ga0395898_0011908 3300037466 Bacteria 9008
96 Ga0395898_0042170 3300037466 Bacteria 4504
97 Ga0395898_0060086 3300037466 Bacteria 3695
98 Ga0395898_0076457 3300037466 Bacteria 3233
99 Ga0395898_0712632 3300037466 Bacteria 945
100 Ga0395898_0772899 3300037466 Bacteria 901
101 Ga0395905_0005379 3300037471 Bacteria 13089
102 Ga0395905_0065449 3300037471 Bacteria 3403
103 Ga0395905_0094501 3300037471 Bacteria 2805
104 Ga0395905_0245073 3300037471 Bacteria 1674
105 Ga0436364_0046100 3300037853 Bacteria 33608
106 Ga0436364_0426348 3300037853 Bacteria 32972
107 Ga0436364_0540370 3300037853 Bacteria 46403
108 Ga0436364_1179026 3300037853 Bacteria 7709
109 Ga0395901_0000717 3300038443 Bacteria 37735
110 Ga0395901_0003898 3300038443 Bacteria 15005
111 Ga0395901_0015117 3300038443 Bacteria 7849
112 Ga0395901_0098332 3300038443 Bacteria 3068
113 Ga0436365_1316738 3300039437 Bacteria 946
114 Ga0436365_1792426 3300039437 Bacteria 1863
115 Ga0436363_0598756 3300039450 Bacteria 1311
116 Ga0439453_0009527 3300041408 Bacteria 1584
117 Ga0439451_000844 3300042009 Bacteria 5882
118 Ga0466969_0021922 3300044656 Bacteria 3302
119 Ga0466966_0035269 3300044684 Bacteria 3232
120 Ga0466961_0033035 3300044693 Bacteria 3325
121 Ga0466971_0089283 3300044719 Bacteria 1410
122 Ga0466959_0049303 3300045049 Bacteria 3093
123 Ga0466959_0094011 3300045049 Bacteria 2151
124 Ga0466959_0407525 3300045049 Bacteria 924
125 Ga0466958_0008975 3300045836 Bacteria 5554
126 Ga0466967_0220101 3300045976 Bacteria 1804
127 Ga0466967_0590613 3300045976 Bacteria 1095
128 Ga0495616_0246041 3300046513 Bacteria 770
129 Ga0495644_0049403 3300046523 Bacteria 1579
130 Ga0495667_0194073 3300046559 Bacteria 1301
131 Ga0495656_0145095 3300046615 Bacteria 1142
132 Ga0495668_0269348 3300046616 Bacteria 933
133 Ga0495588_0063097 3300046674 Bacteria 1921
134 Ga0495658_0178880 3300046683 Bacteria 1315
135 Ga0495658_0354246 3300046683 Bacteria 933
136 Ga0495676_0277565 3300047321 Bacteria 1135
137 Ga0495683_0245928 3300047323 Bacteria 787
138 Ga0495593_0141158 3300047673 Bacteria 1220
139 Ga0496101_0062302 3300048904 Bacteria 2711
140 Ga0496104_0264066 3300048907 Bacteria 1634
141 Ga0496105_0281493 3300048908 Bacteria 1341
142 Ga0496106_0048586 3300048909 Bacteria 3195
143 Ga0496108_0129101 3300048911 Bacteria 2172
144 Ga0496109_0355085 3300048912 Bacteria 1385
145 Ga0496110_0076586 3300048913 Bacteria 2974
146 Ga0496111_0019998 3300048914 Bacteria 4658
147 Ga0496112_0562495 3300048915 Bacteria 1074
148 Ga0496114_0104776 3300048917 Bacteria 2419
149 Ga0501034_0306506 3300049571 Bacteria 1524
150 Ga0501042_0397712 3300049578 Bacteria 998
151 Ga0501046_0564737 3300049580 Bacteria 810
152 Ga0501047_0099618 3300049581 Bacteria 2785
153 Ga0501067_0470864 3300049583 Bacteria 702
154 Ga0501068_0211348 3300049584 Bacteria 1232
155 Ga0501073_0377595 3300049589 Bacteria 979
156 Ga0501075_0081886 3300049591 Bacteria 2444
157 Ga0501081_0123112 3300049743 Bacteria 1849
158 nmdc:mga05p37_1055869_c1 3300050507 Bacteria 856
159 nmdc:mga05p37_105774_c1 3300050507 Bacteria 3461
160 nmdc:mga05p37_347062_c1 3300050507 Bacteria 1748
161 nmdc:mga06r32_15555_c1 3300050510 Bacteria 6911
162 nmdc:mga08y16_179261_c1 3300050511 Bacteria 2200
163 nmdc:mga0n895_293943_c1 3300050512 Bacteria 1647
164 nmdc:mga0n895_423983_c1 3300050512 Bacteria 1345
165 nmdc:mga0rr50_12179_c1 3300050513 Bacteria 5544
166 nmdc:mga0rr50_16937_c1 3300050513 Bacteria 4854
167 nmdc:mga0rr50_77673_c1 3300050513 Bacteria 2552
168 nmdc:mga08x19_102621_c1 3300050514 Bacteria 1900
169 nmdc:mga0a205_17685_c1 3300050515 Bacteria 6691
170 nmdc:mga0a205_423952_c1 3300050515 Bacteria 1192
171 Ga0495601_0118833 3300053077 Bacteria 1716
172 Ga0495601_0125181 3300053077 Bacteria 1672
173 Ga0495612_0149564 3300053078 Bacteria 1016
174 Ga0530510_0064775 3300061734 Bacteria 2647
175 Ga0495628_0151999
176 JGI25407J50210_10000692
177 Ga0070683_100172049
178 Ga0070689_100581852
179 Ga0070687_100200655
180 Ga0070675_100455382
181 Ga0070674_100107938
182 Ga0070674_100503895
183 Ga0070688_100258229
184 Ga0070709_10066546
185 Ga0070714_100622555
186 Ga0070713_100037913
187 Ga0070700_100103596
188 Ga0070678_100078285
189 Ga0070698_100304395
190 Ga0070697_100159231
191 Ga0070672_100251194
192 Ga0070693_100500409
193 Ga0070665_100224541
194 Ga0070664_100519490
195 Ga0068857_100278248
196 Ga0068864_100414569
197 Ga0068866_10063590
198 Ga0068870_10323909
199 Ga0068863_100586865
200 Ga0081455_10004322
201 Ga0081538_10002074
202 Ga0081538_10017489
203 Ga0081538_10118246
204 Ga0070717_10597817
205 Ga0097621_100647586
206 Ga0075431_100050765
207 Ga0075433_10061446
208 Ga0075433_10076593
209 Ga0075434_100036279
210 Ga0075434_100101050
211 Ga0068865_100222984
212 Ga0075436_100010868
213 Ga0075435_100014180
214 Ga0075435_100015443
215 Ga0111539_10012375
216 Ga0111539_10133553
217 Ga0111539_10508850
218 Ga0111539_11218406
219 Ga0105245_10411097
220 Ga0114129_10127853
221 Ga0114129_10170099
222 Ga0105243_10018261
223 Ga0105248_10068679
224 Ga0105246_10009536
225 Ga0157378_10681120
226 Ga0157375_10131724
227 Ga0163163_10483128
228 Ga0157380_11214884
229 Ga0157379_10739333
230 Ga0157376_10046015
231 Ga0163161_10036398
232 Ga0197907_10484202
233 Ga0213876_10195514
234 Ga0213875_10000363
235 Ga0213875_10000628
236 Ga0213875_10004456
237 Ga0207662_10558544
238 Ga0207659_10476931
239 Ga0207687_10312097
240 Ga0207700_10000001
241 Ga0207700_10000216
242 Ga0207700_10656356
243 Ga0207664_10135904
244 Ga0207669_10617544
245 Ga0207691_10049356
246 Ga0207711_10116985
247 Ga0207661_10223751
248 Ga0207661_10740226
249 Ga0207679_10461110
250 Ga0207712_10238488
251 Ga0207678_10200163
252 Ga0207708_10061718
253 Ga0207641_10743052
254 Ga0207676_10145384
255 Ga0207683_10158597
256 Ga0268266_10174985
257 Ga0268264_10176105
258 Ga0307406_10356017
259 Ga0373943_0007563
260 Ga0373946_0061547
261 Ga0373935_0271222
262 Ga0373925_0550728
263 Ga0395899_0002678
264 Ga0395900_0025404
265 Ga0395900_0030269
266 Ga0395900_0089317
267 Ga0395900_0131294
268 Ga0395900_0153962
269 Ga0395898_0011908
270 Ga0395898_0042170
271 Ga0395898_0060086
272 Ga0395898_0076457
273 Ga0395898_0712632
274 Ga0395898_0772899
275 Ga0395905_0005379
276 Ga0395905_0065449
277 Ga0395905_0094501
278 Ga0395905_0245073
279 Ga0436364_0046100
280 Ga0436364_0426348
281 Ga0436364_0540370
282 Ga0436364_1179026
283 Ga0395901_0000717
284 Ga0395901_0003898
285 Ga0395901_0015117
286 Ga0395901_0098332
287 Ga0436365_1316738
288 Ga0436365_1792426
289 Ga0436363_0598756
290 Ga0439453_0009527
291 Ga0439451_000844
292 Ga0466969_0021922
293 Ga0466966_0035269
294 Ga0466961_0033035
295 Ga0466971_0089283
296 Ga0466959_0049303
297 Ga0466959_0094011
298 Ga0466959_0407525
299 Ga0466958_0008975
300 Ga0466967_0220101
301 Ga0466967_0590613
302 Ga0495616_0246041
303 Ga0495644_0049403
304 Ga0495667_0194073
305 Ga0495656_0145095
306 Ga0495668_0269348
307 Ga0495588_0063097
308 Ga0495658_0178880
309 Ga0495658_0354246
310 Ga0495676_0277565
311 Ga0495683_0245928
312 Ga0495593_0141158
313 Ga0496101_0062302
314 Ga0496104_0264066
315 Ga0496105_0281493
316 Ga0496106_0048586
317 Ga0496108_0129101
318 Ga0496109_0355085
319 Ga0496110_0076586
320 Ga0496111_0019998
321 Ga0496112_0562495
322 Ga0496114_0104776
323 Ga0501034_0306506
324 Ga0501042_0397712
325 Ga0501046_0564737
326 Ga0501047_0099618
327 Ga0501067_0470864
328 Ga0501068_0211348
329 Ga0501073_0377595
330 Ga0501075_0081886
331 Ga0501081_0123112
332 nmdc:mga05p37_1055869_c1
333 nmdc:mga05p37_105774_c1
334 nmdc:mga05p37_347062_c1
335 nmdc:mga06r32_15555_c1
336 nmdc:mga08y16_179261_c1
337 nmdc:mga0n895_293943_c1
338 nmdc:mga0n895_423983_c1
339 nmdc:mga0rr50_12179_c1
340 nmdc:mga0rr50_16937_c1
341 nmdc:mga0rr50_77673_c1
342 nmdc:mga08x19_102621_c1
343 nmdc:mga0a205_17685_c1
344 nmdc:mga0a205_423952_c1
345 Ga0495601_0118833
346 Ga0495601_0125181
347 Ga0495612_0149564
348 Ga0530510_0064775

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

23

215

0.95

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

29

220

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3i1j-assembly1.cif.gz_A structure of a putative short chain dehydrogenase from pseudomonas syringae 0.9239 2 216
8bcj-assembly2.cif.gz_D crystal structure of short-chain dehydrogenase pa3128 from pseudomonas aeruginosa pao1 in complex with nadp+ 0.9195 2 215
3gy0-assembly1.cif.gz_A-2 crystal structure of putatitve short chain dehydrogenase from shigella flexneri 2a str. 301 complexed with nadp 0.9122 2 217
3g1t-assembly1.cif.gz_A-2 crystal structure of short chain dehydrogenase from salmonella enterica subsp. enterica serovar typhi str. ct18 0.9121 2 217
3s55-assembly2.cif.gz_G crystal structure of a putative short-chain dehydrogenase/reductase from mycobacterium abscessus bound to nad 0.9105 2 215
ID Description Score Start End Superfamily
af_C6T421_12_106_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9278 2 68 3.40.50.720
af_Q0JEC9_1_74_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9266 2 54 3.40.50.720
5nahA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9179 1 33 3.50.50.60
af_C0P944_2_268_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9139 2 215 3.40.50.720
af_A0A0P0Y501_3_211_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9116 2 180 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2W6CIC7-F1-model_v4 Short-chain dehydrogenase 0.9941 1 219 GO:0016491
AF-A0A352Y0G9-F1-model_v4 Short-chain dehydrogenase 0.992 98 219 GO:0004757
GO:0005737
GO:0006729
AF-A0A6J4PGN0-F1-model_v4 Oxidoreductase SCO1803 0.9904 100 220 GO:0004757
GO:0005737
GO:0006729
AF-A0A838J592-F1-model_v4 SDR family oxidoreductase 0.9888 82 221 GO:0004757
GO:0005737
GO:0006729
AF-D7BG86-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.9881 2 219 GO:0016491

Map