F264215

General Info

Members Datasets Scaffolds Average Seq Length
174 127 133 330

Family's Representative Sequence

Representative Sequence 3300005719|Ga0068861_100110305|Ga0068861_1001103052
Length 339
Sequence VPEGHSIHRIARQFDRNFVGHVVHASSPQGRFALGAAELDGRRMTDARAVGKQMFLGFEGDRWLRVHLGLYGAWDFAGDILLDPTIASANGRMGQTNQRGTFLEGPNPDAVDPDAAILDSAGENSLTSIGAPRRTRLRMSESEKEANGFETFPPEPVGQVRVRLLTETIVADLRGPTRCEVLDPAQVERIVSKLGPDPLIDDGPAAEERFTRTVRRKGVPIGLLLMDQDVVAGIGNVYRAELLFRAKQNPHTPGRDVPEEHVRHLWTDWAKLLRIGVETGQMMTMDDLDPDEYRAAMANRDDRHWVYKREGLPCRVCGTNIVLEEMGARKLYWCPYCQA

Samples

Sample ID Description Type Environment
1 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
2 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
3 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
4 2643221546 Microbacterium sp. Root53 Isolate Unclassified
5 2643221553 Microbacterium sp. Root553 Isolate Unclassified
6 2643221566 Microbacterium sp. Root166 Isolate Unclassified
7 2643221575 Microbacterium sp. Root61 Isolate Unclassified
8 2643221597 Microbacterium sp. Root180 Isolate Unclassified
9 2643221630 Microbacterium sp. Root322 Isolate Unclassified
10 2643221649 Leifsonia sp. Root4 Isolate Unclassified
11 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
12 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
13 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
14 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
15 2773857759 Microbacterium sp. 1294 Isolate Unclassified
16 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
17 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
18 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
19 2808606372 Agromyces sp. 23-23 Isolate Unclassified
20 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
21 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
22 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
23 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
24 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
25 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
26 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
27 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
28 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
29 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
30 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
31 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
32 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
33 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
34 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
35 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
36 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
37 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
38 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
39 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
40 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
41 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
42 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
43 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
44 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
45 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
46 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
47 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
48 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
49 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
50 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
51 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
52 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
60 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
61 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
72 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
73 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
74 3300044671 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA1E Metagenome Unclassified
75 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
76 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
77 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
78 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
79 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
80 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
81 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
82 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
83 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
84 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
85 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
86 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
87 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
88 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
89 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
90 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
91 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
92 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
93 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
94 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
95 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
96 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
99 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
100 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
104 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
116 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
117 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
118 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
119 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
120 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
121 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
122 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
123 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
124 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
125 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
126 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
127 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.14
Metatranscriptomes 2.3
Isolates 23.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.37
Nodule 0
Rhizoplane 10.92
Rhizosphere 36.78
Stem 0
Stem Tuber 0
Unclassified 37.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001348 3300002738 Bacteria 8986
2 Ga0006562J51391_1043447 3300003578 Bacteria 16295
3 Ga0006562J51391_1043453 3300003578 Bacteria 2500
4 Ga0065714_10005941 3300005288 Bacteria 5127
5 Ga0070659_100161620 3300005366 Bacteria 1831
6 Ga0070678_100099606 3300005456 Bacteria 2249
7 Ga0068864_100150035 3300005618 Bacteria 2111
8 Ga0068861_100110305 3300005719 Bacteria 2204
9 Ga0068870_10170740 3300005840 Bacteria 1298
10 Ga0075365_10002269 3300006038 Bacteria 9329
11 Ga0075363_100001575 3300006048 Bacteria 8763
12 Ga0075364_10008910 3300006051 Bacteria 6010
13 Ga0075364_10017250 3300006051 Bacteria 4507
14 Ga0075364_10043246 3300006051 Bacteria 2928
15 Ga0075364_10119777 3300006051 Bacteria 1761
16 Ga0075367_10002934 3300006178 Bacteria 7958
17 Ga0075369_10030602 3300006186 Bacteria 2267
18 Ga0075370_10019773 3300006353 Bacteria 3671
19 Ga0105237_10018246 3300009545 Bacteria 7260
20 Ga0157369_10000618 3300013105 Bacteria 46223
21 Ga0157369_10241146 3300013105 Bacteria 1888
22 Ga0163162_10061224 3300013306 Bacteria 3801
23 Ga0157375_10269160 3300013308 Bacteria 1866
24 Ga0157380_10123960 3300014326 Bacteria 2193
25 Ga0206354_11243004 3300020081 Bacteria 2547
26 Ga0206353_11205468 3300020082 Bacteria 8245
27 Ga0209646_1000099 3300025246 Bacteria 180436
28 Ga0209677_101332 3300025253 Bacteria 10856
29 Ga0207688_10030121 3300025901 Bacteria 2991
30 Ga0207643_10073620 3300025908 Bacteria 1969
31 Ga0207678_10192786 3300026067 Bacteria 1742
32 Ga0207675_100010325 3300026118 Bacteria 8751
33 Ga0207683_10155457 3300026121 Bacteria 2065
34 Ga0307514_10019576 3300031649 Bacteria 5537
35 Ga0307406_10000162 3300031901 Bacteria 40382
36 Ga0307406_10000201 3300031901 Bacteria 35555
37 Ga0307406_10009423 3300031901 Bacteria 5475
38 Ga0307406_10024763 3300031901 Bacteria 3588
39 Ga0307409_100305713 3300031995 Bacteria 1482
40 Ga0395898_0028945 3300037466 Bacteria 5552
41 Ga0439465_0015347 3300041413 Bacteria 2390
42 Ga0451793_0242500 3300041452 Bacteria 1175
43 Ga0451853_0362179 3300041512 Bacteria 1740
44 Ga0466978_0124584 3300044671 Bacteria 1589
45 Ga0466965_0000011 3300044683 Bacteria 107319
46 Ga0466968_0006441 3300044735 Bacteria 4426
47 Ga0466970_0000138 3300044765 Bacteria 33745
48 Ga0466970_0018253 3300044765 Bacteria 3629
49 Ga0466960_0164213 3300044901 Bacteria 1194
50 Ga0495627_001282 3300046453 Bacteria 15451
51 Ga0495638_0095580 3300046460 Bacteria 1784
52 Ga0495620_0050805 3300046515 Bacteria 1767
53 Ga0495654_0071408 3300046530 Bacteria 1645
54 Ga0495645_0047906 3300046543 Bacteria 3113
55 Ga0495656_0097443 3300046615 Bacteria 1355
56 Ga0496100_0021336 3300048903 Bacteria 3897
57 Ga0496102_0121152 3300048905 Bacteria 2443
58 Ga0496104_0047916 3300048907 Bacteria 4028
59 Ga0496104_0066442 3300048907 Bacteria 3424
60 Ga0496104_0218130 3300048907 Bacteria 1820
61 Ga0496105_0220953 3300048908 Bacteria 1542
62 Ga0496106_0154562 3300048909 Bacteria 1811
63 Ga0496107_0033381 3300048910 Bacteria 3682
64 Ga0496108_0042788 3300048911 Bacteria 3782
65 Ga0496109_0016991 3300048912 Bacteria 6369
66 Ga0496109_0065190 3300048912 Bacteria 3334
67 Ga0496110_0066363 3300048913 Bacteria 3191
68 Ga0496112_0086808 3300048915 Bacteria 3095
69 Ga0496113_0048368 3300048916 Bacteria 3163
70 Ga0496114_0034746 3300048917 Bacteria 4161
71 Ga0496114_0043364 3300048917 Bacteria 3730
72 Ga0496114_0116326 3300048917 Bacteria 2295
73 Ga0496115_0076240 3300048918 Bacteria 2725
74 Ga0496116_0020219 3300048919 Bacteria 5063
75 Ga0496117_0003360 3300048920 Bacteria 18658
76 Ga0496117_0021420 3300048920 Bacteria 5229
77 Ga0496118_0001579 3300048921 Bacteria 33796
78 Ga0496118_0026641 3300048921 Bacteria 4917
79 Ga0496118_0043484 3300048921 Bacteria 3530
80 Ga0496119_0002351 3300048922 Bacteria 20830
81 Ga0496119_0005445 3300048922 Bacteria 12196
82 Ga0496119_0012813 3300048922 Bacteria 6765
83 Ga0496119_0062292 3300048922 Bacteria 2223
84 Ga0496120_0002969 3300048923 Bacteria 16141
85 Ga0496120_0028597 3300048923 Bacteria 3414
86 Ga0496120_0043069 3300048923 Bacteria 2633
87 Ga0496122_0000031 3300048925 Bacteria 329726
88 Ga0496122_0000120 3300048925 Bacteria 182539
89 Ga0496122_0006841 3300048925 Bacteria 12929
90 Ga0496122_0019610 3300048925 Bacteria 6167
91 Ga0496122_0042044 3300048925 Bacteria 3602
92 Ga0496123_0000013 3300048926 Bacteria 439694
93 Ga0496123_0000051 3300048926 Bacteria 237095
94 Ga0496123_0067759 3300048926 Bacteria 2252
95 Ga0496124_0012389 3300048927 Bacteria 8420
96 Ga0496124_0023587 3300048927 Bacteria 5614
97 Ga0496124_0056145 3300048927 Bacteria 3323
98 Ga0496125_0007006 3300048928 Bacteria 12062
99 Ga0496125_0007116 3300048928 Bacteria 11940
100 Ga0496125_0012951 3300048928 Bacteria 8233
101 Ga0496125_0036297 3300048928 Bacteria 4307
102 Ga0496125_0062557 3300048928 Bacteria 2975
103 Ga0496125_0065309 3300048928 Bacteria 2884
104 Ga0496126_0008564 3300048929 Bacteria 11019
105 Ga0496126_0038648 3300048929 Bacteria 4437
106 Ga0496126_0040805 3300048929 Bacteria 4301
107 Ga0496126_0080282 3300048929 Bacteria 2887
108 Ga0501034_0002011 3300049571 Bacteria 25659
109 Ga0501037_0019734 3300049573 Bacteria 4973
110 Ga0501038_0001899 3300049574 Bacteria 19324
111 Ga0501039_0014208 3300049575 Bacteria 6096
112 Ga0501039_0079641 3300049575 Bacteria 2549
113 Ga0501043_0004260 3300049579 Bacteria 11648
114 Ga0501046_0008499 3300049580 Bacteria 8940
115 Ga0501048_0032082 3300049582 Bacteria 3798
116 Ga0501070_0001478 3300049586 Bacteria 21037
117 Ga0501070_0030053 3300049586 Bacteria 4553
118 Ga0501045_0007931 3300049824 Bacteria 7393
119 nmdc:mga00v17_2145_c1 3300050491 Bacteria 10141
120 nmdc:mga00v17_3685_c1 3300050491 Bacteria 7915
121 nmdc:mga00v17_40704_c1 3300050491 Bacteria 2788
122 nmdc:mga0yw44_5049_c1 3300050492 Bacteria 6167
123 nmdc:mga0k408_201736_c1 3300050493 Bacteria 1187
124 nmdc:mga06z11_45235_c1 3300050494 Bacteria 2225
125 Ga0500593_101513 3300053117 Bacteria 1198
126 Ga0500559_0001017 3300053136 Bacteria 17219
127 Ga0500573_0004790 3300053140 Bacteria 7162
128 Ga0500573_0007359 3300053140 Bacteria 5998
129 Ga0500573_0008576 3300053140 Bacteria 5634
130 Ga0500573_0037522 3300053140 Bacteria 2800
131 Ga0500573_0069096 3300053140 Bacteria 2016
132 Ga0500573_0069528 3300053140 Bacteria 2009
133 Ga0500577_0002104 3300053142 Bacteria 5086

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044901 Ga0466960_0164213 Ga0466960_0164213_106_975 264
2 3300048928 Ga0496125_0062557 Ga0496125_0062557_2090_2929 278
3 3300044671 Ga0466978_0124584 Ga0466978_0124584_319_1158 279
4 3300053140 Ga0500573_0037522 Ga0500573_0037522_11_850 279
5 3300048921 Ga0496118_0043484 Ga0496118_0043484_39_926 295
6 3300053140 Ga0500573_0069528 Ga0500573_0069528_183_1103 306
7 3300041512 Ga0451853_0362179 Ga0451853_0362179_77_1087 312
8 3300026121 Ga0207683_10155457 Ga0207683_101554573 316
9 iso_pu_bacteria 2870622029 2870623977 318
10 3300053140 Ga0500573_0004790 Ga0500573_0004790_5025_5993 322
11 3300053140 Ga0500573_0008576 Ga0500573_0008576_1648_2616 322
12 3300020081 Ga0206354_11243004 Ga0206354_112430043 323
13 3300053140 Ga0500573_0069096 Ga0500573_0069096_846_1817 323
14 iso_pu_bacteria 2939657138 2939658449 323
15 3300049573 Ga0501037_0019734 Ga0501037_0019734_3516_4490 324
16 3300049575 Ga0501039_0014208 Ga0501039_0014208_1722_2696 324
17 3300049579 Ga0501043_0004260 Ga0501043_0004260_7286_8260 324
18 3300049580 Ga0501046_0008499 Ga0501046_0008499_4427_5401 324
19 3300049582 Ga0501048_0032082 Ga0501048_0032082_1278_2252 324
20 3300049586 Ga0501070_0030053 Ga0501070_0030053_1490_2464 324
21 3300049824 Ga0501045_0007931 Ga0501045_0007931_23_997 324
22 3300053136 Ga0500559_0001017 Ga0500559_0001017_10112_11086 324
23 iso_pu_bacteria 2977264416 2977266748 324
24 iso_pu_bacteria 2585428094 2587863387 325
25 iso_pu_bacteria 2643221649 2644280529 325
26 iso_pu_bacteria 2721755702 2723641909 325
27 iso_pu_bacteria 2773857759 2774384355 325
28 iso_pu_bacteria 2808606372 2808901858 325
29 iso_pu_bacteria 2919443155 2919446413 325
30 iso_pu_bacteria 2935409751 2935411249 325
31 iso_pu_bacteria 2977251589 2977254058 325
32 iso_pu_bacteria 8046352972 8046353066 325
33 3300048920 Ga0496117_0021420 Ga0496117_0021420_1205_2248 327
34 3300048921 Ga0496118_0026641 Ga0496118_0026641_2427_3470 327
35 3300053140 Ga0500573_0007359 Ga0500573_0007359_2632_3624 327
36 3300053142 Ga0500577_0002104 Ga0500577_0002104_1860_2843 327
37 iso_pu_bacteria 2643221575 2643885291 327
38 iso_pu_bacteria 2808606368 2808885731 327
39 iso_pu_bacteria 2857720070 2857720206 327
40 iso_pu_bacteria 2928090899 2928091957 327
41 3300031649 Ga0307514_10019576 Ga0307514_100195765 328
42 iso_pu_bacteria 2585428157 2588109021 328
43 iso_pu_bacteria 2643221542 2643733791 328
44 iso_pu_bacteria 2643221546 2643753427 328
45 iso_pu_bacteria 2643221553 2643785612 328
46 iso_pu_bacteria 2643221566 2643848510 328
47 iso_pu_bacteria 2643221597 2643996007 328
48 iso_pu_bacteria 2643221630 2644170372 328
49 iso_pu_bacteria 2643221724 2644680026 328
50 iso_pu_bacteria 2728369380 2730229524 328
51 iso_pu_bacteria 2747842429 2747951811 328
52 iso_pu_bacteria 2773857763 2774399382 328
53 iso_pu_bacteria 2808606306 2808631091 328
54 iso_pu_bacteria 2811994872 2812323307 328
55 iso_pu_bacteria 2821268502 2821270110 328
56 iso_pu_bacteria 2833709550 2833711071 328
57 iso_pu_bacteria 2852646457 2852647397 328
58 iso_pu_bacteria 2852663356 2852665143 328
59 iso_pu_bacteria 2857723135 2857723666 328
60 iso_pu_bacteria 2870628048 2870630467 328
61 iso_pu_bacteria 2906799679 2906800598 328
62 iso_pu_bacteria 2945968032 2945971883 328
63 iso_pu_bacteria 2946033335 2946033679 328
64 iso_pu_bacteria 2946041624 2946044064 328
65 iso_pu_bacteria 8004182704 8004185273 328
66 iso_pu_bacteria 8045830549 8045831695 328
67 3300005288 Ga0065714_10005941 Ga0065714_100059413 329
68 3300005456 Ga0070678_100099606 Ga0070678_1000996061 329
69 3300005618 Ga0068864_100150035 Ga0068864_1001500352 329
70 3300005719 Ga0068861_100110305 Ga0068861_1001103052 329
71 3300005840 Ga0068870_10170740 Ga0068870_101707402 329
72 3300013105 Ga0157369_10000618 Ga0157369_1000061812 329
73 3300013105 Ga0157369_10241146 Ga0157369_102411462 329
74 3300020082 Ga0206353_11205468 Ga0206353_112054683 329
75 3300025253 Ga0209677_101332 Ga0209677_1013325 329
76 3300025901 Ga0207688_10030121 Ga0207688_100301212 329
77 3300025908 Ga0207643_10073620 Ga0207643_100736203 329
78 3300026067 Ga0207678_10192786 Ga0207678_101927862 329
79 3300026118 Ga0207675_100010325 Ga0207675_1000103253 329
80 3300031901 Ga0307406_10024763 Ga0307406_100247633 329
81 3300041413 Ga0439465_0015347 Ga0439465_0015347_613_1617 329
82 3300044683 Ga0466965_0000011 Ga0466965_0000011_22052_23044 329
83 3300046460 Ga0495638_0095580 Ga0495638_0095580_133_1137 329
84 3300046615 Ga0495656_0097443 Ga0495656_0097443_212_1216 329
85 3300048905 Ga0496102_0121152 Ga0496102_0121152_649_1668 329
86 3300048922 Ga0496119_0005445 Ga0496119_0005445_1675_2703 329
87 3300048923 Ga0496120_0028597 Ga0496120_0028597_543_1571 329
88 3300048925 Ga0496122_0000120 Ga0496122_0000120_113195_114223 329
89 3300048926 Ga0496123_0000051 Ga0496123_0000051_143088_144116 329
90 3300048927 Ga0496124_0012389 Ga0496124_0012389_6854_7882 329
91 3300048928 Ga0496125_0036297 Ga0496125_0036297_2847_3875 329
92 3300048928 Ga0496125_0012951 Ga0496125_0012951_2024_3016 330
93 3300003578 Ga0006562J51391_1043447 Ga0006562J51391_10434479 331
94 3300003578 Ga0006562J51391_1043453 Ga0006562J51391_10434532 331
95 3300006051 Ga0075364_10008910 Ga0075364_100089106 331
96 3300031901 Ga0307406_10000201 Ga0307406_100002016 331
97 3300048908 Ga0496105_0220953 Ga0496105_0220953_332_1327 331
98 3300048919 Ga0496116_0020219 Ga0496116_0020219_267_1262 331
99 3300048921 Ga0496118_0001579 Ga0496118_0001579_16943_17938 331
100 3300048922 Ga0496119_0002351 Ga0496119_0002351_13411_14406 331
101 3300048923 Ga0496120_0002969 Ga0496120_0002969_4462_5457 331
102 3300048925 Ga0496122_0000031 Ga0496122_0000031_44757_45752 331
103 3300048925 Ga0496122_0019610 Ga0496122_0019610_4558_5556 331
104 3300048926 Ga0496123_0000013 Ga0496123_0000013_44767_45762 331
105 3300048926 Ga0496123_0067759 Ga0496123_0067759_942_1940 331
106 3300048927 Ga0496124_0023587 Ga0496124_0023587_4159_5154 331
107 3300048927 Ga0496124_0056145 Ga0496124_0056145_348_1346 331
108 3300048928 Ga0496125_0007006 Ga0496125_0007006_9888_10883 331
109 3300048929 Ga0496126_0008564 Ga0496126_0008564_2761_3756 331
110 3300050491 nmdc:mga00v17_3685_c1 nmdc:mga00v17_3685_c1_198_1193 331
111 3300002738 JGI25154J39366_1001348 JGI25154J39366_10013483 332
112 3300005366 Ga0070659_100161620 Ga0070659_1001616202 332
113 3300006038 Ga0075365_10002269 Ga0075365_100022694 332
114 3300006048 Ga0075363_100001575 Ga0075363_1000015758 332
115 3300006051 Ga0075364_10017250 Ga0075364_100172504 332
116 3300006051 Ga0075364_10043246 Ga0075364_100432463 332
117 3300006051 Ga0075364_10119777 Ga0075364_101197772 332
118 3300006178 Ga0075367_10002934 Ga0075367_100029345 332
119 3300006186 Ga0075369_10030602 Ga0075369_100306022 332
120 3300006353 Ga0075370_10019773 Ga0075370_100197734 332
121 3300009545 Ga0105237_10018246 Ga0105237_100182466 332
122 3300013306 Ga0163162_10061224 Ga0163162_100612243 332
123 3300013308 Ga0157375_10269160 Ga0157375_102691601 332
124 3300014326 Ga0157380_10123960 Ga0157380_101239602 332
125 3300025246 Ga0209646_1000099 Ga0209646_1000099146 332
126 3300031901 Ga0307406_10000162 Ga0307406_1000016212 332
127 3300031901 Ga0307406_10009423 Ga0307406_100094235 332
128 3300031995 Ga0307409_100305713 Ga0307409_1003057132 332
129 3300037466 Ga0395898_0028945 Ga0395898_0028945_1273_2271 332
130 3300041452 Ga0451793_0242500 Ga0451793_0242500_11_1009 332
131 3300044735 Ga0466968_0006441 Ga0466968_0006441_828_1826 332
132 3300044765 Ga0466970_0000138 Ga0466970_0000138_11842_12840 332
133 3300044765 Ga0466970_0018253 Ga0466970_0018253_2043_3041 332
134 3300046453 Ga0495627_001282 Ga0495627_001282_2850_3848 332
135 3300046515 Ga0495620_0050805 Ga0495620_0050805_60_1058 332
136 3300046530 Ga0495654_0071408 Ga0495654_0071408_138_1142 332
137 3300046543 Ga0495645_0047906 Ga0495645_0047906_1086_2096 332
138 3300048903 Ga0496100_0021336 Ga0496100_0021336_2855_3874 332
139 3300048907 Ga0496104_0047916 Ga0496104_0047916_2743_3762 332
140 3300048907 Ga0496104_0066442 Ga0496104_0066442_662_1693 332
141 3300048907 Ga0496104_0218130 Ga0496104_0218130_751_1761 332
142 3300048909 Ga0496106_0154562 Ga0496106_0154562_398_1417 332
143 3300048910 Ga0496107_0033381 Ga0496107_0033381_166_1185 332
144 3300048911 Ga0496108_0042788 Ga0496108_0042788_2512_3543 332
145 3300048912 Ga0496109_0016991 Ga0496109_0016991_4195_5226 332
146 3300048912 Ga0496109_0065190 Ga0496109_0065190_1545_2564 332
147 3300048913 Ga0496110_0066363 Ga0496110_0066363_1157_2176 332
148 3300048915 Ga0496112_0086808 Ga0496112_0086808_1458_2477 332
149 3300048916 Ga0496113_0048368 Ga0496113_0048368_1179_2198 332
150 3300048917 Ga0496114_0034746 Ga0496114_0034746_2733_3743 332
151 3300048917 Ga0496114_0043364 Ga0496114_0043364_276_1277 332
152 3300048917 Ga0496114_0116326 Ga0496114_0116326_394_1413 332
153 3300048918 Ga0496115_0076240 Ga0496115_0076240_113_1144 332
154 3300048920 Ga0496117_0003360 Ga0496117_0003360_2747_3745 332
155 3300048922 Ga0496119_0012813 Ga0496119_0012813_4475_5473 332
156 3300048922 Ga0496119_0062292 Ga0496119_0062292_858_1877 332
157 3300048923 Ga0496120_0043069 Ga0496120_0043069_1161_2180 332
158 3300048925 Ga0496122_0006841 Ga0496122_0006841_827_1834 332
159 3300048925 Ga0496122_0042044 Ga0496122_0042044_1018_2016 332
160 3300048928 Ga0496125_0007116 Ga0496125_0007116_3164_4171 332
161 3300048928 Ga0496125_0065309 Ga0496125_0065309_282_1280 332
162 3300048929 Ga0496126_0038648 Ga0496126_0038648_1905_2903 332
163 3300048929 Ga0496126_0040805 Ga0496126_0040805_2210_3208 332
164 3300048929 Ga0496126_0080282 Ga0496126_0080282_293_1291 332
165 3300049571 Ga0501034_0002011 Ga0501034_0002011_23062_24060 332
166 3300049574 Ga0501038_0001899 Ga0501038_0001899_13622_14632 332
167 3300049575 Ga0501039_0079641 Ga0501039_0079641_1432_2430 332
168 3300049586 Ga0501070_0001478 Ga0501070_0001478_13980_14978 332
169 3300050491 nmdc:mga00v17_2145_c1 nmdc:mga00v17_2145_c1_3430_4428 332
170 3300050491 nmdc:mga00v17_40704_c1 nmdc:mga00v17_40704_c1_180_1178 332
171 3300050492 nmdc:mga0yw44_5049_c1 nmdc:mga0yw44_5049_c1_4353_5351 332
172 3300050493 nmdc:mga0k408_201736_c1 nmdc:mga0k408_201736_c1_152_1150 332
173 3300050494 nmdc:mga06z11_45235_c1 nmdc:mga06z11_45235_c1_440_1438 332
174 3300053117 Ga0500593_101513 Ga0500593_101513_23_1021 332

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06827

zf-FPG_IleRS

Zinc finger found in FPG and IleRS

311

339

0.97

PF06831

H2TH

Formamidopyrimidine-DNA glycosylase H2TH domain

194

287

0.93

PF01149

Fapy_DNA_glyco

Formamidopyrimidine-DNA glycosylase N-terminal domain

1

105

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
5wlc-assembly1.cif.gz_LT the complete structure of the small subunit processome 0.9053 42 70
6zqf-assembly1.cif.gz_UU cryo-em structure of the 90s pre-ribosome from saccharomyces cerevisiae, state dis-b (poly-ala) 0.9053 42 70
4nsx-assembly1.cif.gz_A crystal structure of the utp21 tandem wd domain 0.889 41 70
6zqc-assembly1.cif.gz_UU cryo-em structure of the 90s pre-ribosome from saccharomyces cerevisiae, state pre-a1 0.8646 39 70
4cis-assembly1.cif.gz_A structure of mutm in complex with carbocyclic 8-oxo-g containing dna 0.8389 2 332
ID Description Score Start End Superfamily
af_Q4DXX6_1_299_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.9341 42 67 2.130.10.10
af_P9WNB9_2_120_3.20.190.10 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.9218 2 180 3.20.190.10
af_P9WNB9_2_120_3.20.190.10 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.9068 2 180 3.20.190.10
af_Q80U35_1727_1949_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.9067 43 67 2.130.10.10
af_A0A286Y9Q5_952_1195_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.9064 43 70 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A7K1ESS1-F1-model_v4 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.9495 1 272 GO:0000703
GO:0003684
GO:0006284
GO:0008270
GO:0140078
AF-A0A7K0LXS2-F1-model_v4 Fpg/Nei family DNA glycosylase 0.9487 1 173 GO:0000703
GO:0003906
GO:0006284
GO:0008270
AF-A0A6J6AX67-F1-model_v4 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.9466 1 332 GO:0000703
GO:0003684
GO:0006284
GO:0008270
GO:0140078
AF-A0A7K1ESS1-F1-model_v4 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.9451 1 272 GO:0000703
GO:0003684
GO:0006284
GO:0008270
GO:0140078
AF-A0A520EV35-F1-model_v4 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.9449 1 278 GO:0000703
GO:0003684
GO:0006284
GO:0008270
GO:0140078

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Predicted Structure (AlphaFold2)

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