F263780

General Info

Members Datasets Scaffolds Average Seq Length
174 112 348 682

Family's Representative Sequence

Representative Sequence 3300005289|Ga0065704_10082086|Ga0065704_100820863
Length 716
Sequence MDATNSQSVIQKLQLTPPWRERLFPNNEWVLLLVIVLECVVFSITGSNFLSGANAFEITRLSVEVGLLALVLTPIVITGGIDLSVGSMIGLAAVVLGGLWRDAHLPILIAALVTLLVGIVGGGLNALMISRLKFPPLIVTLGTFSLFRGIAEGLTGGIENYSGFSSRFLFLGQGYVGGIIPTQLFILIVAIAICAWWLHRTSYGRSLYAIGFSAEGARYAGIPLERRLAFVYVLSGLVSSVAAIIYVAHLGQAKSDAGTGYELMAITAVVLGGTSIFGGRGTVLGTVLGLFAIVILQNGLRLSGQPAELAGVLTGVLLVGTILIDRLSSRLEARRRAGVGAERDLTNRQSAIANRQSFEEDFEVRNSQIAILSGVILLAALIVAGSNWWSTRSLREEIRGSGKSSDAVTGPGTNGRKPVIALMPKAKGDPYFVSCKQGADEAAKELGVELLWDGPTDLDPAKQNEVVEAWITRGVDVIAVSVENKVGISSVLRKAREKGIKVITWDADAERDARDFLINQATPQGIGYTLTDEAARILNNKGEFAIITASLSAANQNEWIKFIKERLAQKYPDLKLVTIQPSEGDRDRAFSETQTVLKVYPNVKLVMAIAAPAVPGAAEAVQQSGRKDVKVTGLSLPNMNKPYVHAGVVESIVLWNTVDLGYLTVYAANALITGQLKRSDKELQAGRLAKIEVADDEVRLGAPFIFNKDNIDRFNF

Samples

Sample ID Description Type Environment
1 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
2 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
3 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
4 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300025223 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
94 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
108 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
109 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
110 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.57
Nodule 0
Rhizoplane 1.15
Rhizosphere 97.7
Stem 0
Stem Tuber 0
Unclassified 2.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065704_10082086 3300005289 Bacteria 3656
2 JGI24748J21848_1000012 3300002074 Bacteria 152599
3 JGI24034J26672_10000003 3300002239 Bacteria 501747
4 JGI24751J29686_10000535 3300002459 Bacteria 10679
5 Ga0065704_10073046 3300005289 Bacteria 7632
6 Ga0065715_10003377 3300005293 Bacteria 7018
7 Ga0065707_10003862 3300005295 Bacteria 4456
8 Ga0065707_10083947 3300005295 Bacteria 7914
9 Ga0070670_100000095 3300005331 Bacteria 83302
10 Ga0070670_100041264 3300005331 Bacteria 3967
11 Ga0068869_100078544 3300005334 Bacteria 2458
12 Ga0070660_100033821 3300005339 Bacteria 3857
13 Ga0070687_100001894 3300005343 Bacteria 7605
14 Ga0070669_100002599 3300005353 Bacteria 13051
15 Ga0070669_100036845 3300005353 Bacteria 3546
16 Ga0070703_10000142 3300005406 Bacteria 37070
17 Ga0070700_100006201 3300005441 Bacteria 6373
18 Ga0070700_100013785 3300005441 Bacteria 4547
19 Ga0070700_100035000 3300005441 Bacteria 3036
20 Ga0070694_100001899 3300005444 Bacteria 12389
21 Ga0070694_100009703 3300005444 Bacteria 5911
22 Ga0070662_100053249 3300005457 Bacteria 2929
23 Ga0070662_100053524 3300005457 Bacteria 2922
24 Ga0070707_100000423 3300005468 Bacteria 41848
25 Ga0070698_100001987 3300005471 Bacteria 22694
26 Ga0070698_100025109 3300005471 Bacteria 6211
27 Ga0070699_100002830 3300005518 Bacteria 15479
28 Ga0070699_100013229 3300005518 Bacteria 7114
29 Ga0070699_100057656 3300005518 Bacteria 3364
30 Ga0070697_100000726 3300005536 Bacteria 24563
31 Ga0068853_100058292 3300005539 Bacteria 3333
32 Ga0070686_100005493 3300005544 Bacteria 7018
33 Ga0068855_100021106 3300005563 Bacteria 7809
34 Ga0070664_100013648 3300005564 Bacteria 6620
35 Ga0068857_100030625 3300005577 Bacteria 4752
36 Ga0068857_100084093 3300005577 Bacteria 2843
37 Ga0068856_100002448 3300005614 Bacteria 19099
38 Ga0070702_100008499 3300005615 Bacteria 4976
39 Ga0068859_100024357 3300005617 Bacteria 6072
40 Ga0068859_100151493 3300005617 Bacteria 2395
41 Ga0068864_100008776 3300005618 Bacteria 8332
42 Ga0068866_10009287 3300005718 Bacteria 4169
43 Ga0068858_100000277 3300005842 Bacteria 55193
44 Ga0068860_100041690 3300005843 Bacteria 4385
45 Ga0068860_100078086 3300005843 Bacteria 3149
46 Ga0068862_100008414 3300005844 Bacteria 8537
47 Ga0068862_100082904 3300005844 Bacteria 2784
48 Ga0081455_10077899 3300005937 Bacteria 2725
49 Ga0097621_100009961 3300006237 Bacteria 6927
50 Ga0068871_100054949 3300006358 Bacteria 3232
51 Ga0075428_100000060 3300006844 Bacteria 88550
52 Ga0075428_100003750 3300006844 Bacteria 16657
53 Ga0075428_100004932 3300006844 Bacteria 14814
54 Ga0075431_100000825 3300006847 Bacteria 27053
55 Ga0075431_100016374 3300006847 Bacteria 7523
56 Ga0075431_100036349 3300006847 Bacteria 5073
57 Ga0075433_10016902 3300006852 Bacteria 6029
58 Ga0075433_10031155 3300006852 Bacteria 4556
59 Ga0075434_100000789 3300006871 Bacteria 25020
60 Ga0075434_100029845 3300006871 Bacteria 5367
61 Ga0075436_100001673 3300006914 Bacteria 15155
62 Ga0075436_100010460 3300006914 Bacteria 6359
63 Ga0097620_100024360 3300006931 Bacteria 6072
64 Ga0097620_100151489 3300006931 Bacteria 2395
65 Ga0075435_100027036 3300007076 Bacteria 4484
66 Ga0099794_10001081 3300007265 Bacteria 9313
67 Ga0111539_10000002 3300009094 Bacteria 983359
68 Ga0111539_10003757 3300009094 Bacteria 19991
69 Ga0111539_10016377 3300009094 Bacteria 9192
70 Ga0111539_10017878 3300009094 Bacteria 8780
71 Ga0111539_10028702 3300009094 Bacteria 6786
72 Ga0111539_10040809 3300009094 Bacteria 5584
73 Ga0111539_10043173 3300009094 Bacteria 5406
74 Ga0111539_10066677 3300009094 Bacteria 4252
75 Ga0105247_10000003 3300009101 Bacteria 694517
76 Ga0114129_10000241 3300009147 Bacteria 61333
77 Ga0114129_10035263 3300009147 Bacteria 7068
78 Ga0114129_10074192 3300009147 Bacteria 4739
79 Ga0114129_10112702 3300009147 Bacteria 3751
80 Ga0114129_10130373 3300009147 Bacteria 3453
81 Ga0105243_10000051 3300009148 Bacteria 139849
82 Ga0105242_10000379 3300009176 Bacteria 35359
83 Ga0105248_10078246 3300009177 Bacteria 3718
84 Ga0105249_10000654 3300009553 Bacteria 31467
85 Ga0105249_10030438 3300009553 Bacteria 4880
86 Ga0105246_10019055 3300011119 Bacteria 4379
87 Ga0157378_10043030 3300013297 Unclassified 4010
88 Ga0157378_10075873 3300013297 Bacteria 3028
89 Ga0157378_10108391 3300013297 Bacteria 2543
90 Ga0163162_10011644 3300013306 Bacteria 8575
91 Ga0163162_10015533 3300013306 Bacteria 7440
92 Ga0163162_10043295 3300013306 Bacteria 4508
93 Ga0163163_10000026 3300014325 Bacteria 179198
94 Ga0157380_10000514 3300014326 Bacteria 23717
95 Ga0157380_10007240 3300014326 Bacteria 7869
96 Ga0157380_10008051 3300014326 Bacteria 7510
97 Ga0157380_10009824 3300014326 Bacteria 6869
98 Ga0207672_1000116 3300025223 Bacteria 10720
99 Ga0207697_10000720 3300025315 Bacteria 18834
100 Ga0207653_10000247 3300025885 Bacteria 35017
101 Ga0207710_10000001 3300025900 Bacteria 1797433
102 Ga0207710_10002594 3300025900 Bacteria 8348
103 Ga0207647_10001939 3300025904 Bacteria 15813
104 Ga0207643_10000274 3300025908 Bacteria 35744
105 Ga0207662_10003226 3300025918 Bacteria 8351
106 Ga0207657_10053297 3300025919 Bacteria 3505
107 Ga0207652_10015314 3300025921 Bacteria 6227
108 Ga0207646_10000759 3300025922 Bacteria 41860
109 Ga0207681_10001887 3300025923 Bacteria 13410
110 Ga0207681_10006297 3300025923 Bacteria 7285
111 Ga0207681_10040097 3300025923 Bacteria 3114
112 Ga0207694_10042780 3300025924 Bacteria 3495
113 Ga0207650_10000006 3300025925 Bacteria 544730
114 Ga0207690_10026861 3300025932 Bacteria 3630
115 Ga0207706_10009707 3300025933 Bacteria 8834
116 Ga0207686_10000022 3300025934 Bacteria 174346
117 Ga0207686_10038587 3300025934 Bacteria 2892
118 Ga0207709_10000056 3300025935 Bacteria 221962
119 Ga0207691_10039645 3300025940 Bacteria 4358
120 Ga0207711_10093399 3300025941 Bacteria 2650
121 Ga0207679_10011992 3300025945 Bacteria 5634
122 Ga0207679_10055590 3300025945 Bacteria 2919
123 Ga0207703_10000080 3300026035 Bacteria 111786
124 Ga0207703_10056734 3300026035 Bacteria 3191
125 Ga0207708_10002909 3300026075 Bacteria 12621
126 Ga0207708_10018851 3300026075 Bacteria 5197
127 Ga0207702_10015024 3300026078 Bacteria 6420
128 Ga0207676_10001879 3300026095 Bacteria 15376
129 Ga0207674_10021816 3300026116 Bacteria 6892
130 Ga0207674_10050363 3300026116 Bacteria 4255
131 Ga0207675_100123453 3300026118 Bacteria 2451
132 Ga0207683_10053602 3300026121 Bacteria 3537
133 Ga0209588_1007740 3300027671 Bacteria 3172
134 Ga0207428_10000026 3300027907 Bacteria 255539
135 Ga0207428_10001192 3300027907 Bacteria 27970
136 Ga0207428_10010790 3300027907 Bacteria 8146
137 Ga0207428_10026464 3300027907 Bacteria 4843
138 Ga0268264_10030801 3300028381 Bacteria 4397
139 Ga0307408_100014954 3300031548 Bacteria 5164
140 Ga0307405_10075119 3300031731 Bacteria 2188
141 Ga0307406_10014584 3300031901 Unclassified 4525
142 Ga0307409_100028816 3300031995 Bacteria 3963
143 Ga0307416_100061229 3300032002 Unclassified 3070
144 Ga0436365_0485201 3300039437 Bacteria 13668
145 Ga0451577_0098570 3300042876 Bacteria 2610
146 Ga0495645_0002695 3300046543 Bacteria 12043
147 Ga0495658_0011241 3300046683 Bacteria 4497
148 Ga0496108_0121717 3300048911 Bacteria 2239
149 Ga0496109_0074534 3300048912 Bacteria 3120
150 Ga0501034_0097132 3300049571 Bacteria 2942
151 Ga0501047_0001683 3300049581 Bacteria 21524
152 Ga0501076_0011386 3300049592 Bacteria 6622
153 Ga0501035_0000808 3300049822 Bacteria 33357
154 Ga0501044_0000948 3300049823 Bacteria 34820
155 nmdc:mga05p37_23051_c1 3300050507 Bacteria 7553
156 nmdc:mga05p37_3408_c1 3300050507 Bacteria 18551
157 nmdc:mga06r32_103092_c1 3300050510 Bacteria 2801
158 nmdc:mga06r32_19883_c1 3300050510 Bacteria 6171
159 nmdc:mga08y16_112530_c1 3300050511 Bacteria 2834
160 nmdc:mga08y16_152651_c1 3300050511 Bacteria 2401
161 nmdc:mga08y16_2_c1 3300050511 Bacteria 983367
162 nmdc:mga08y16_31601_c1 3300050511 Bacteria 5568
163 nmdc:mga08y16_74921_c1 3300050511 Bacteria 3528
164 nmdc:mga08y16_9193_c1 3300050511 Bacteria 10371
165 nmdc:mga0n895_140435_c1 3300050512 Bacteria 2444
166 nmdc:mga0rr50_27252_c1 3300050513 Bacteria 3998
167 nmdc:mga08x19_804_c1 3300050514 Bacteria 19097
168 nmdc:mga0a205_21743_c1 3300050515 Bacteria 6065
169 nmdc:mga0a205_33349_c1 3300050515 Bacteria 4937
170 Ga0495619_0047493 3300053085 Unclassified 2827
171 Ga0500616_0000554 3300053153 Bacteria 46158
172 Ga0501084_0014368 3300054114 Bacteria 6562
173 Ga0501082_0001403 3300060353 Bacteria 21228
174 Ga0501082_0017845 3300060353 Bacteria 6112
175 Ga0065704_10082086
176 JGI24748J21848_1000012
177 JGI24034J26672_10000003
178 JGI24751J29686_10000535
179 Ga0065704_10073046
180 Ga0065715_10003377
181 Ga0065707_10003862
182 Ga0065707_10083947
183 Ga0070670_100000095
184 Ga0070670_100041264
185 Ga0068869_100078544
186 Ga0070660_100033821
187 Ga0070687_100001894
188 Ga0070669_100002599
189 Ga0070669_100036845
190 Ga0070703_10000142
191 Ga0070700_100006201
192 Ga0070700_100013785
193 Ga0070700_100035000
194 Ga0070694_100001899
195 Ga0070694_100009703
196 Ga0070662_100053249
197 Ga0070662_100053524
198 Ga0070707_100000423
199 Ga0070698_100001987
200 Ga0070698_100025109
201 Ga0070699_100002830
202 Ga0070699_100013229
203 Ga0070699_100057656
204 Ga0070697_100000726
205 Ga0068853_100058292
206 Ga0070686_100005493
207 Ga0068855_100021106
208 Ga0070664_100013648
209 Ga0068857_100030625
210 Ga0068857_100084093
211 Ga0068856_100002448
212 Ga0070702_100008499
213 Ga0068859_100024357
214 Ga0068859_100151493
215 Ga0068864_100008776
216 Ga0068866_10009287
217 Ga0068858_100000277
218 Ga0068860_100041690
219 Ga0068860_100078086
220 Ga0068862_100008414
221 Ga0068862_100082904
222 Ga0081455_10077899
223 Ga0097621_100009961
224 Ga0068871_100054949
225 Ga0075428_100000060
226 Ga0075428_100003750
227 Ga0075428_100004932
228 Ga0075431_100000825
229 Ga0075431_100016374
230 Ga0075431_100036349
231 Ga0075433_10016902
232 Ga0075433_10031155
233 Ga0075434_100000789
234 Ga0075434_100029845
235 Ga0075436_100001673
236 Ga0075436_100010460
237 Ga0097620_100024360
238 Ga0097620_100151489
239 Ga0075435_100027036
240 Ga0099794_10001081
241 Ga0111539_10000002
242 Ga0111539_10003757
243 Ga0111539_10016377
244 Ga0111539_10017878
245 Ga0111539_10028702
246 Ga0111539_10040809
247 Ga0111539_10043173
248 Ga0111539_10066677
249 Ga0105247_10000003
250 Ga0114129_10000241
251 Ga0114129_10035263
252 Ga0114129_10074192
253 Ga0114129_10112702
254 Ga0114129_10130373
255 Ga0105243_10000051
256 Ga0105242_10000379
257 Ga0105248_10078246
258 Ga0105249_10000654
259 Ga0105249_10030438
260 Ga0105246_10019055
261 Ga0157378_10043030
262 Ga0157378_10075873
263 Ga0157378_10108391
264 Ga0163162_10011644
265 Ga0163162_10015533
266 Ga0163162_10043295
267 Ga0163163_10000026
268 Ga0157380_10000514
269 Ga0157380_10007240
270 Ga0157380_10008051
271 Ga0157380_10009824
272 Ga0207672_1000116
273 Ga0207697_10000720
274 Ga0207653_10000247
275 Ga0207710_10000001
276 Ga0207710_10002594
277 Ga0207647_10001939
278 Ga0207643_10000274
279 Ga0207662_10003226
280 Ga0207657_10053297
281 Ga0207652_10015314
282 Ga0207646_10000759
283 Ga0207681_10001887
284 Ga0207681_10006297
285 Ga0207681_10040097
286 Ga0207694_10042780
287 Ga0207650_10000006
288 Ga0207690_10026861
289 Ga0207706_10009707
290 Ga0207686_10000022
291 Ga0207686_10038587
292 Ga0207709_10000056
293 Ga0207691_10039645
294 Ga0207711_10093399
295 Ga0207679_10011992
296 Ga0207679_10055590
297 Ga0207703_10000080
298 Ga0207703_10056734
299 Ga0207708_10002909
300 Ga0207708_10018851
301 Ga0207702_10015024
302 Ga0207676_10001879
303 Ga0207674_10021816
304 Ga0207674_10050363
305 Ga0207675_100123453
306 Ga0207683_10053602
307 Ga0209588_1007740
308 Ga0207428_10000026
309 Ga0207428_10001192
310 Ga0207428_10010790
311 Ga0207428_10026464
312 Ga0268264_10030801
313 Ga0307408_100014954
314 Ga0307405_10075119
315 Ga0307406_10014584
316 Ga0307409_100028816
317 Ga0307416_100061229
318 Ga0436365_0485201
319 Ga0451577_0098570
320 Ga0495645_0002695
321 Ga0495658_0011241
322 Ga0496108_0121717
323 Ga0496109_0074534
324 Ga0501034_0097132
325 Ga0501047_0001683
326 Ga0501076_0011386
327 Ga0501035_0000808
328 Ga0501044_0000948
329 nmdc:mga05p37_23051_c1
330 nmdc:mga05p37_3408_c1
331 nmdc:mga06r32_103092_c1
332 nmdc:mga06r32_19883_c1
333 nmdc:mga08y16_112530_c1
334 nmdc:mga08y16_152651_c1
335 nmdc:mga08y16_2_c1
336 nmdc:mga08y16_31601_c1
337 nmdc:mga08y16_74921_c1
338 nmdc:mga08y16_9193_c1
339 nmdc:mga0n895_140435_c1
340 nmdc:mga0rr50_27252_c1
341 nmdc:mga08x19_804_c1
342 nmdc:mga0a205_21743_c1
343 nmdc:mga0a205_33349_c1
344 Ga0495619_0047493
345 Ga0500616_0000554
346 Ga0501084_0014368
347 Ga0501082_0001403
348 Ga0501082_0017845

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

420

676

0.97

PF02653

BPD_transp_2

Branched-chain amino acid transport system / permease component

54

322

0.91

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

417

679

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
5bq3-assembly4.cif.gz_D crystal structure of a sugar abc transporter (actodo_00688) from actinomyces odontolyticus atcc 17982 at 2.60 a resolution 0.9562 390 687
1tm2-assembly1.cif.gz_A crystal structure of the apo form of the salmonella typhimurium ai-2 receptor lsrb 0.9313 390 687
4kvf-assembly1.cif.gz_A the crystal structure of a rhamnose abc transporter, periplasmic rhamnose-binding protein from kribbella flavida dsm 17836 0.9287 378 687
4kvf-assembly1.cif.gz_A the crystal structure of a rhamnose abc transporter, periplasmic rhamnose-binding protein from kribbella flavida dsm 17836 0.9143 378 687
5bq3-assembly4.cif.gz_D crystal structure of a sugar abc transporter (actodo_00688) from actinomyces odontolyticus atcc 17982 at 2.60 a resolution 0.9117 390 687
ID Description Score Start End Superfamily
af_P76142_29_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9751 391 488 3.40.50.2300
2qvcB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9559 390 489 3.40.50.2300
af_P76142_29_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9468 391 488 3.40.50.2300
af_P0AFS1_34_305_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9381 54 319 1.10.3470.10
4pz0A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9345 492 687 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A6V8LRA0-F1-model_v4 Periplasmic binding protein domain-containing protein 0.963 436 687 GO:0015762
GO:0030246
GO:0030288
AF-A0A6V8LRA0-F1-model_v4 Periplasmic binding protein domain-containing protein 0.9411 436 687 GO:0015762
GO:0030246
GO:0030288
AF-A0A6D0IG30-F1-model_v4 L-arabinose ABC transporter permease AraH 0.9382 27 300 GO:0005886
GO:0022857
AF-A0A6C1QXF3-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.928 402 684 GO:0005886
GO:0030246
GO:0030313
AF-A0A4R4NFQ8-F1-model_v4 ABC transporter permease 0.9271 26 324 GO:0005886
GO:0022857

Map