F263170

General Info

Members Datasets Scaffolds Average Seq Length
173 110 346 311

Family's Representative Sequence

Representative Sequence 3300046454|Ga0495592_0053464|Ga0495592_0053464_1204_2241
Length 339
Sequence MRGHAKAWTPHRSFNFQPATPMTPSRTEVLTIDRSLPTERLDTYLRGKFPAVSRGAIQRLIEEGHIRVNGRNIKPTHTPRAGEQVEVHWPEARPAVAQPEEIPLEILYEDEALLVLNKPPGLVVHPAAGHDEHTLVNALLHHCKGQLSGIGGVARPGIVHRLDKETSGCLVVAKNDETHLALSAQFASRKVEKIYHVIACGEMPRDRGEIRAAIARHPSHRKRMAVDEDLGRQARTSYRVIERLRGATFAEALLHTGRTHQIRVHFQFLGFPVVGDQTYGNRQNLRLTELTGYTALRQMLHAFQLSFIHPRTGKRLSSEAKLPEDFRDALSALREKSDG

Samples

Sample ID Description Type Environment
1 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
2 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
3 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
20 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
41 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
55 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
56 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
57 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
58 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
59 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
60 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
61 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
62 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
63 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
64 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
65 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
66 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
67 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
68 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
69 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
72 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
73 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
74 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
79 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
80 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
81 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
82 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
83 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
84 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
85 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
86 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
87 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
88 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
89 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
90 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
91 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
92 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
93 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
94 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
95 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
96 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
97 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
98 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
99 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
102 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
103 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
104 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
107 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
108 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
109 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
110 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.73
Rhizosphere 98.27
Stem 0
Stem Tuber 0
Unclassified 6.94

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495592_0053464 3300046454 Bacteria 2996
2 Ga0070709_10230879 3300005434 Bacteria 1324
3 Ga0070714_100013191 3300005435 Bacteria 6615
4 Ga0070713_100025871 3300005436 Bacteria 4596
5 Ga0070705_100092823 3300005440 Bacteria 1885
6 Ga0070694_100052521 3300005444 Bacteria 2755
7 Ga0070681_10037960 3300005458 Bacteria 4830
8 Ga0070699_100073927 3300005518 Bacteria 2965
9 Ga0070679_100219088 3300005530 Bacteria 1865
10 Ga0070684_100104105 3300005535 Bacteria 2539
11 Ga0070686_100243646 3300005544 Bacteria 1310
12 Ga0070696_100036069 3300005546 Bacteria 3407
13 Ga0068855_100056865 3300005563 Bacteria 4586
14 Ga0068857_100021532 3300005577 Bacteria 5672
15 Ga0070702_100029182 3300005615 Bacteria 2997
16 Ga0068852_100315293 3300005616 Bacteria 1517
17 Ga0068859_100227942 3300005617 Bacteria 1951
18 Ga0068859_100374919 3300005617 Bacteria 1518
19 Ga0097621_100062898 3300006237 Bacteria 3048
20 Ga0097621_100222696 3300006237 Bacteria 1644
21 Ga0097621_100303283 3300006237 Bacteria 1411
22 Ga0075433_10007045 3300006852 Bacteria 8905
23 Ga0075434_100310508 3300006871 Bacteria 1597
24 Ga0097620_100227937 3300006931 Bacteria 1951
25 Ga0097620_100374920 3300006931 Bacteria 1518
26 Ga0075435_100282594 3300007076 Unclassified 1417
27 Ga0099794_10082542 3300007265 Unclassified 1587
28 Ga0105240_10014759 3300009093 Bacteria 10653
29 Ga0105240_10084801 3300009093 Bacteria 3883
30 Ga0111539_10775792 3300009094 Bacteria 1116
31 Ga0105245_10025826 3300009098 Bacteria 5166
32 Ga0105245_10195755 3300009098 Unclassified 1939
33 Ga0105243_10168653 3300009148 Bacteria 1894
34 Ga0105241_10091959 3300009174 Bacteria 2395
35 Ga0105241_10194844 3300009174 Bacteria 1689
36 Ga0105242_10051443 3300009176 Bacteria 3357
37 Ga0105238_10038093 3300009551 Bacteria 4884
38 Ga0105249_10392084 3300009553 Bacteria 1417
39 Ga0157370_10005501 3300013104 Bacteria 14201
40 Ga0157374_10407220 3300013296 Bacteria 1357
41 Ga0163162_10140148 3300013306 Bacteria 2531
42 Ga0157372_10469323 3300013307 Bacteria 1467
43 Ga0157372_10501736 3300013307 Bacteria 1415
44 Ga0157375_10000037 3300013308 Bacteria 176523
45 Ga0157375_10088105 3300013308 Bacteria 3158
46 Ga0163163_10000336 3300014325 Bacteria 45265
47 Ga0157377_10060786 3300014745 Bacteria 2158
48 Ga0157379_10411387 3300014968 Unclassified 1245
49 Ga0157376_10230410 3300014969 Bacteria 1720
50 Ga0157376_10439736 3300014969 Eukaryota 1270
51 Ga0207699_10044495 3300025906 Bacteria 2585
52 Ga0207707_10035605 3300025912 Bacteria 4352
53 Ga0207663_10135411 3300025916 Bacteria 1709
54 Ga0207663_10248923 3300025916 Bacteria 1307
55 Ga0207646_10145502 3300025922 Bacteria 2136
56 Ga0207687_10091794 3300025927 Bacteria 2216
57 Ga0207700_10111851 3300025928 Unclassified 2199
58 Ga0207664_10012098 3300025929 Bacteria 6163
59 Ga0207670_10070200 3300025936 Bacteria 2419
60 Ga0207670_10142041 3300025936 Bacteria 1771
61 Ga0207667_10040954 3300025949 Bacteria 4930
62 Ga0207667_10115622 3300025949 Bacteria 2765
63 Ga0207667_10419867 3300025949 Bacteria 1361
64 Ga0207667_10550521 3300025949 Bacteria 1167
65 Ga0207702_10215673 3300026078 Bacteria 1786
66 Ga0207641_10100550 3300026088 Bacteria 2547
67 Ga0207674_10004387 3300026116 Bacteria 17004
68 Ga0207675_100286091 3300026118 Bacteria 1603
69 Ga0265337_1004884 3300028556 Bacteria 5462
70 Ga0265334_10011500 3300028573 Bacteria 3727
71 Ga0265323_10003433 3300028653 Bacteria 6997
72 Ga0265322_10025594 3300028654 Bacteria 1687
73 Ga0265338_10002770 3300028800 Bacteria 25657
74 Ga0265338_10003273 3300028800 Bacteria 23015
75 Ga0265338_10006002 3300028800 Bacteria 15610
76 Ga0265338_10006094 3300028800 Bacteria 15481
77 Ga0265338_10016476 3300028800 Bacteria 8039
78 Ga0265338_10050489 3300028800 Unclassified 3759
79 Ga0265320_10015130 3300031240 Bacteria 4368
80 Ga0265340_10103662 3300031247 Bacteria 1320
81 Ga0265327_10002080 3300031251 Bacteria 22363
82 Ga0265316_10000659 3300031344 Bacteria 38376
83 Ga0265316_10013268 3300031344 Bacteria 7331
84 Ga0307412_10178693 3300031911 Bacteria 1594
85 Ga0373956_0045441 3300035119 Bacteria 1960
86 Ga0373946_0003956 3300035171 Bacteria 5270
87 Ga0373955_0049387 3300035172 Bacteria 2284
88 Ga0373935_0006954 3300035692 Bacteria 6754
89 Ga0373927_0005893 3300035695 Bacteria 8398
90 Ga0373927_0007072 3300035695 Bacteria 7610
91 Ga0373947_0011307 3300035725 Bacteria 5123
92 Ga0373937_0016291 3300036401 Bacteria 6598
93 Ga0373937_0064922 3300036401 Plasmid 3359
94 Ga0373937_0327207 3300036401 Bacteria 1450
95 Ga0373925_0000775 3300037068 Bacteria 29377
96 Ga0373925_0312182 3300037068 Bacteria 1271
97 Ga0373925_0322805 3300037068 Unclassified 1250
98 Ga0451789_1058943 3300041443 Bacteria 1081
99 Ga0451807_1067911 3300041486 Bacteria 1059
100 Ga0439434_0041199 3300042435 Bacteria 1419
101 Ga0451577_0002550 3300042876 Bacteria 21489
102 Ga0451577_0340447 3300042876 Unclassified 1360
103 Ga0453684_0014384 3300044712 Bacteria 12668
104 Ga0453684_0133942 3300044712 Bacteria 2970
105 Ga0453684_0219421 3300044712 Unclassified 2204
106 Ga0451576_0116648 3300045051 Bacteria 2780
107 Ga0451576_0336523 3300045051 Bacteria 1580
108 Ga0451576_0580333 3300045051 Unclassified 1178
109 Ga0495592_0000053 3300046454 Bacteria 108449
110 Ga0495592_0028463 3300046454 Bacteria 4232
111 Ga0495592_0181102 3300046454 Bacteria 1435
112 Ga0495651_0045264 3300046462 Bacteria 3410
113 Ga0495651_0111775 3300046462 Bacteria 2019
114 Ga0495653_0100871 3300046463 Bacteria 2092
115 Ga0495653_0107022 3300046463 Bacteria 2016
116 Ga0495582_0192639 3300046473 Bacteria 1163
117 Ga0495662_0028991 3300046476 Bacteria 2673
118 Ga0495662_0052087 3300046476 Bacteria 1976
119 Ga0495664_0036072 3300046477 Bacteria 2914
120 Ga0495608_0127342 3300046511 Bacteria 1631
121 Ga0495618_0001525 3300046514 Bacteria 15539
122 Ga0495618_0288958 3300046514 Bacteria 1021
123 Ga0495628_0000091 3300046516 Bacteria 71204
124 Ga0495628_0081004 3300046516 Bacteria 2522
125 Ga0495628_0339248 3300046516 Bacteria 1106
126 Ga0495630_0000327 3300046517 Bacteria 37889
127 Ga0495630_0012668 3300046517 Bacteria 6129
128 Ga0495630_0016208 3300046517 Bacteria 5446
129 Ga0495630_0020924 3300046517 Bacteria 4828
130 Ga0495666_0018505 3300046526 Bacteria 3466
131 Ga0495666_0065357 3300046526 Bacteria 1735
132 Ga0495666_0071280 3300046526 Bacteria 1652
133 Ga0495640_0017123 3300046533 Bacteria 5408
134 Ga0495640_0074730 3300046533 Bacteria 2265
135 Ga0495640_0079239 3300046533 Bacteria 2187
136 Ga0495586_0000395 3300046535 Bacteria 26612
137 Ga0495586_0001363 3300046535 Bacteria 13572
138 Ga0495586_0020134 3300046535 Bacteria 3553
139 Ga0495586_0165895 3300046535 Unclassified 1247
140 Ga0495587_0102418 3300046536 Bacteria 1648
141 Ga0495645_0000721 3300046543 Bacteria 22692
142 Ga0495645_0001035 3300046543 Bacteria 18939
143 Ga0495645_0037470 3300046543 Bacteria 3535
144 Ga0495645_0258937 3300046543 Bacteria 1153
145 Ga0495622_0017105 3300046557 Bacteria 3376
146 Ga0495667_0014856 3300046559 Bacteria 5261
147 Ga0495599_0009675 3300046678 Bacteria 5900
148 Ga0495599_0014178 3300046678 Bacteria 4935
149 Ga0495599_0059006 3300046678 Bacteria 2400
150 Ga0495646_0196271 3300046680 Bacteria 1101
151 Ga0495647_0011046 3300046681 Bacteria 3086
152 Ga0495647_0014908 3300046681 Bacteria 2714
153 Ga0495658_0017518 3300046683 Bacteria 3702
154 Ga0495658_0046690 3300046683 Bacteria 2436
155 Ga0495658_0119236 3300046683 Bacteria 1594
156 Ga0495613_0009886 3300046689 Bacteria 7092
157 Ga0495613_0199018 3300046689 Bacteria 1413
158 Ga0495613_0205174 3300046689 Unclassified 1388
159 Ga0495613_0357928 3300046689 Bacteria 1001
160 Ga0495624_0026213 3300046690 Bacteria 3820
161 Ga0495674_0008649 3300047319 Bacteria 9679
162 Ga0495674_0019409 3300047319 Bacteria 6310
163 Ga0495674_0023344 3300047319 Bacteria 5702
164 Ga0495676_0012558 3300047321 Bacteria 7624
165 Ga0495675_0178768 3300047444 Bacteria 1300
166 Ga0495602_0106262 3300048088 Bacteria 2292
167 Ga0495614_0135555 3300048089 Bacteria 1092
168 Ga0496115_0003082 3300048918 Bacteria 11969
169 Ga0501080_0114088 3300049742 Bacteria 2505
170 nmdc:mga0n895_362194_c1 3300050512 Bacteria 1468
171 nmdc:mga08x19_129045_c1 3300050514 Bacteria 1050
172 Ga0495601_0008088 3300053077 Bacteria 6200
173 Ga0495619_0005504 3300053085 Bacteria 8033
174 Ga0495592_0053464
175 Ga0070709_10230879
176 Ga0070714_100013191
177 Ga0070713_100025871
178 Ga0070705_100092823
179 Ga0070694_100052521
180 Ga0070681_10037960
181 Ga0070699_100073927
182 Ga0070679_100219088
183 Ga0070684_100104105
184 Ga0070686_100243646
185 Ga0070696_100036069
186 Ga0068855_100056865
187 Ga0068857_100021532
188 Ga0070702_100029182
189 Ga0068852_100315293
190 Ga0068859_100227942
191 Ga0068859_100374919
192 Ga0097621_100062898
193 Ga0097621_100222696
194 Ga0097621_100303283
195 Ga0075433_10007045
196 Ga0075434_100310508
197 Ga0097620_100227937
198 Ga0097620_100374920
199 Ga0075435_100282594
200 Ga0099794_10082542
201 Ga0105240_10014759
202 Ga0105240_10084801
203 Ga0111539_10775792
204 Ga0105245_10025826
205 Ga0105245_10195755
206 Ga0105243_10168653
207 Ga0105241_10091959
208 Ga0105241_10194844
209 Ga0105242_10051443
210 Ga0105238_10038093
211 Ga0105249_10392084
212 Ga0157370_10005501
213 Ga0157374_10407220
214 Ga0163162_10140148
215 Ga0157372_10469323
216 Ga0157372_10501736
217 Ga0157375_10000037
218 Ga0157375_10088105
219 Ga0163163_10000336
220 Ga0157377_10060786
221 Ga0157379_10411387
222 Ga0157376_10230410
223 Ga0157376_10439736
224 Ga0207699_10044495
225 Ga0207707_10035605
226 Ga0207663_10135411
227 Ga0207663_10248923
228 Ga0207646_10145502
229 Ga0207687_10091794
230 Ga0207700_10111851
231 Ga0207664_10012098
232 Ga0207670_10070200
233 Ga0207670_10142041
234 Ga0207667_10040954
235 Ga0207667_10115622
236 Ga0207667_10419867
237 Ga0207667_10550521
238 Ga0207702_10215673
239 Ga0207641_10100550
240 Ga0207674_10004387
241 Ga0207675_100286091
242 Ga0265337_1004884
243 Ga0265334_10011500
244 Ga0265323_10003433
245 Ga0265322_10025594
246 Ga0265338_10002770
247 Ga0265338_10003273
248 Ga0265338_10006002
249 Ga0265338_10006094
250 Ga0265338_10016476
251 Ga0265338_10050489
252 Ga0265320_10015130
253 Ga0265340_10103662
254 Ga0265327_10002080
255 Ga0265316_10000659
256 Ga0265316_10013268
257 Ga0307412_10178693
258 Ga0373956_0045441
259 Ga0373946_0003956
260 Ga0373955_0049387
261 Ga0373935_0006954
262 Ga0373927_0005893
263 Ga0373927_0007072
264 Ga0373947_0011307
265 Ga0373937_0016291
266 Ga0373937_0064922
267 Ga0373937_0327207
268 Ga0373925_0000775
269 Ga0373925_0312182
270 Ga0373925_0322805
271 Ga0451789_1058943
272 Ga0451807_1067911
273 Ga0439434_0041199
274 Ga0451577_0002550
275 Ga0451577_0340447
276 Ga0453684_0014384
277 Ga0453684_0133942
278 Ga0453684_0219421
279 Ga0451576_0116648
280 Ga0451576_0336523
281 Ga0451576_0580333
282 Ga0495592_0000053
283 Ga0495592_0028463
284 Ga0495592_0181102
285 Ga0495651_0045264
286 Ga0495651_0111775
287 Ga0495653_0100871
288 Ga0495653_0107022
289 Ga0495582_0192639
290 Ga0495662_0028991
291 Ga0495662_0052087
292 Ga0495664_0036072
293 Ga0495608_0127342
294 Ga0495618_0001525
295 Ga0495618_0288958
296 Ga0495628_0000091
297 Ga0495628_0081004
298 Ga0495628_0339248
299 Ga0495630_0000327
300 Ga0495630_0012668
301 Ga0495630_0016208
302 Ga0495630_0020924
303 Ga0495666_0018505
304 Ga0495666_0065357
305 Ga0495666_0071280
306 Ga0495640_0017123
307 Ga0495640_0074730
308 Ga0495640_0079239
309 Ga0495586_0000395
310 Ga0495586_0001363
311 Ga0495586_0020134
312 Ga0495586_0165895
313 Ga0495587_0102418
314 Ga0495645_0000721
315 Ga0495645_0001035
316 Ga0495645_0037470
317 Ga0495645_0258937
318 Ga0495622_0017105
319 Ga0495667_0014856
320 Ga0495599_0009675
321 Ga0495599_0014178
322 Ga0495599_0059006
323 Ga0495646_0196271
324 Ga0495647_0011046
325 Ga0495647_0014908
326 Ga0495658_0017518
327 Ga0495658_0046690
328 Ga0495658_0119236
329 Ga0495613_0009886
330 Ga0495613_0199018
331 Ga0495613_0205174
332 Ga0495613_0357928
333 Ga0495624_0026213
334 Ga0495674_0008649
335 Ga0495674_0019409
336 Ga0495674_0023344
337 Ga0495676_0012558
338 Ga0495675_0178768
339 Ga0495602_0106262
340 Ga0495614_0135555
341 Ga0496115_0003082
342 Ga0501080_0114088
343 nmdc:mga0n895_362194_c1
344 nmdc:mga08x19_129045_c1
345 Ga0495601_0008088
346 Ga0495619_0005504

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

112

268

0.96

PF01479

S4

S4 domain

39

85

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1prz-assembly1.cif.gz_A crystal structure of pseudouridine synthase rlud catalytic module 0.962 64 287
1v9f-assembly1.cif.gz_A crystal structure of catalytic domain of pseudouridine synthase rlud from escherichia coli 0.953 65 287
5z81-assembly1.cif.gz_C trimeric structure of vibrio cholerae heat shock protein 15 at 2.3 angstrom resolution 0.9057 6 55
5mrc-assembly1.cif.gz_DD structure of the yeast mitochondrial ribosome - class a 0.9047 7 55
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.8996 72 275
ID Description Score Start End Superfamily
1v9fA01 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9647 72 275 3.30.2350.10
af_Q2FZ78_82_304_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9634 73 287 3.30.2350.10
1v9fA01 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9599 72 275 3.30.2350.10
af_P9WHQ3_3_67_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9358 2 57 3.10.290.10
2istA01 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9348 2 54 3.10.290.10
ID Description Score Start End GO Terms
AF-W1XCD3-F1-model_v4 Pseudouridine synthase RsuA/RluA-like domain-containing protein 0.9698 125 229 GO:0000455
GO:0003723
GO:0009982
AF-A0A836WT29-F1-model_v4 deleted 0.9696 94 287
AF-A0A496NK57-F1-model_v4 deleted 0.9685 119 287
AF-A0A497BPX5-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9657 67 287 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A7J5WGG3-F1-model_v4 deleted 0.9632 66 287

Map