F261369

General Info

Members Datasets Scaffolds Average Seq Length
172 96 155 331

Family's Representative Sequence

Representative Sequence 3300046694|Ga0495649_0005127|Ga0495649_0005127_7007_8104
Length 365
Sequence MTWGEDRRSDDEVTDMALVGRRDGRNFGYGRQMSYAGPQALKDMFGGGHYGTVKAHCDRWQAFVKWCRSEQGPGINDARQIDRKVLADYAAYLRDVVGRGDLAISTAQNRLSSVNRTMAALRGDQYVRLPSPSKALGMQRTGVRQSVPQGQDREQVKQIVDALCSRDQRRAVGIVLLARATGMRLREAILADLPRLSREANDLGRINIQDGTKGGRAGASAPRWIAVDDHVRYAIGFARQVSPAGSRNLIAPEESYLNFLQEIVRPARYILHSHNLKGFHERLFLAGMLTGSHATRQRHLRQAKVIQAEIAKRWHRETPWAWQRKHVVWFIDHHLHHRSESTKYYYTLTMRLFARRMEKSWIFVR

Samples

Sample ID Description Type Environment
1 2554235231 Pseudomonas putida MTCC 5279 Isolate Unclassified
2 2599185310 Pseudomonas sp. NFACC09-4 Isolate Rhizoplane
3 2599185312 Pseudomonas sp. NFACC32-1 Isolate Rhizoplane
4 2600255283 Pseudomonas sp. NFR16 Isolate Rhizoplane
5 2816332298 Pseudomonas veronii R02 Isolate Rhizosphere
6 2825651385 Pseudomonas brassicacearum L13-6-12 Isolate Rhizosphere
7 2842815866 Pseudomonas sp. R-72210 Isolate Unclassified
8 2842837860 Pseudomonas sp. R-72102 Isolate Unclassified
9 2842849001 Pseudomonas sp. R-72008 Isolate Unclassified
10 2844665904 Pseudomonas protegens H1F10C Isolate Unclassified
11 2912963787 Pseudomonas sp. R32 Isolate Rhizosphere
12 2919697872 Pseudomonas frederiksbergensis 4169 Isolate Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
16 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
17 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
18 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
19 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
20 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
21 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
22 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
23 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
24 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
29 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
30 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
31 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
32 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
33 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
34 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
35 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
36 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
37 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
38 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
39 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
40 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
41 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
42 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
43 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
44 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
45 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
46 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
47 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
48 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
49 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
50 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
51 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
52 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
53 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
54 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
55 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
56 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
57 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
58 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
59 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
60 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
61 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
62 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
63 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
64 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
65 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
66 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
67 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
68 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
69 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
70 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
71 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
72 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
73 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
74 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
75 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
76 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
77 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
80 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
81 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
82 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
83 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
90 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
91 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
92 8019775933 Pseudomonas sp. PvR083 Isolate Rhizosphere
93 8052494512 Pseudomonas putida LD6 Isolate Unclassified
94 8056115690 Pseudomonas muyukensis COW39 Isolate Rhizosphere
95 8056125926 Pseudomonas azerbaijanorientalis SWRI123 Isolate Rhizosphere
96 8056166840 Pseudomonas triticicola SWRI88 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.12
Metatranscriptomes 0
Isolates 9.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 1.16
Rhizoplane 2.33
Rhizosphere 78.49
Stem 0
Stem Tuber 0
Unclassified 18.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10219919 3300003323 Bacteria 2357
2 Ga0065714_10065426 3300005288 Bacteria 10141
3 Ga0075432_10000709 3300006058 Bacteria 10281
4 Ga0079104_1000422 3300006946 Bacteria 48334
5 Ga0105251_10000027 3300009011 Bacteria 128893
6 Ga0105251_10019004 3300009011 Bacteria 3639
7 Ga0105251_10032990 3300009011 Bacteria 2575
8 Ga0105244_10005172 3300009036 Bacteria 8744
9 Ga0105244_10007324 3300009036 Bacteria 7020
10 Ga0105244_10012220 3300009036 Bacteria 5089
11 Ga0105250_10000107 3300009092 Bacteria 75197
12 Ga0105250_10001443 3300009092 Bacteria 12827
13 Ga0105250_10001936 3300009092 Bacteria 10740
14 Ga0105250_10002693 3300009092 Bacteria 8791
15 Ga0105243_10002361 3300009148 Bacteria 15795
16 Ga0182006_1000235 3300015261 Bacteria 52295
17 Ga0182006_1000393 3300015261 Bacteria 35922
18 Ga0182006_1001234 3300015261 Bacteria 15869
19 Ga0182007_10001174 3300015262 Bacteria 14199
20 Ga0182005_1003113 3300015265 Bacteria 5713
21 Ga0207696_1000020 3300025711 Bacteria 434998
22 Ga0207696_1000172 3300025711 Bacteria 102404
23 Ga0207696_1000605 3300025711 Bacteria 26912
24 Ga0207696_1002652 3300025711 Bacteria 8619
25 Ga0207655_1000275 3300025728 Bacteria 80187
26 Ga0207655_1000848 3300025728 Bacteria 32781
27 Ga0207655_1017009 3300025728 Bacteria 3944
28 Ga0207713_1000077 3300025735 Bacteria 176517
29 Ga0207713_1001923 3300025735 Bacteria 15719
30 Ga0207713_1017559 3300025735 Bacteria 3580
31 Ga0207713_1024391 3300025735 Bacteria 2822
32 Ga0207713_1064575 3300025735 Bacteria 1377
33 Ga0207709_10002252 3300025935 Bacteria 12268
34 Ga0207709_10007231 3300025935 Bacteria 6192
35 Ga0209281_1000167 3300027111 Bacteria 155556
36 Ga0209371_1000207 3300027312 Bacteria 83268
37 Ga0207428_10002261 3300027907 Bacteria 19336
38 Ga0207428_10006831 3300027907 Bacteria 10463
39 Ga0268256_1000226 3300030500 Bacteria 61298
40 Ga0316177_1156267 3300030731 Bacteria 5088
41 Ga0307408_100098028 3300031548 Bacteria 2227
42 Ga0307408_100232294 3300031548 Bacteria 1511
43 Ga0439447_004847 3300041407 Bacteria 4566
44 Ga0439466_0022324 3300041411 Bacteria 2235
45 Ga0439432_001505 3300042006 Bacteria 8746
46 Ga0439432_040848 3300042006 Bacteria 1470
47 Ga0450906_012220 3300042145 Bacteria 1594
48 Ga0495617_002010 3300046452 Bacteria 8467
49 Ga0495627_000732 3300046453 Bacteria 24794
50 Ga0495627_009495 3300046453 Bacteria 3579
51 Ga0495591_000027 3300046458 Bacteria 186086
52 Ga0495591_000316 3300046458 Bacteria 43763
53 Ga0495591_006864 3300046458 Bacteria 4939
54 Ga0495638_0005236 3300046460 Bacteria 9689
55 Ga0495638_0170224 3300046460 Bacteria 1250
56 Ga0495653_0004174 3300046463 Bacteria 11691
57 Ga0495650_0047055 3300046471 Bacteria 1806
58 Ga0495639_0128579 3300046475 Bacteria 1211
59 Ga0495585_0064416 3300046492 Bacteria 2010
60 Ga0495594_0045822 3300046499 Bacteria 2401
61 Ga0495607_0003664 3300046501 Bacteria 11652
62 Ga0495607_0153299 3300046501 Bacteria 1177
63 Ga0495583_0001648 3300046506 Bacteria 21690
64 Ga0495583_0006551 3300046506 Bacteria 7580
65 Ga0495606_0020416 3300046507 Bacteria 4884
66 Ga0495610_0001637 3300046512 Bacteria 19693
67 Ga0495610_0008438 3300046512 Bacteria 6676
68 Ga0495610_0068017 3300046512 Bacteria 1671
69 Ga0495616_0054993 3300046513 Bacteria 1972
70 Ga0495620_0000122 3300046515 Bacteria 62756
71 Ga0495620_0000254 3300046515 Bacteria 39502
72 Ga0495620_0064699 3300046515 Bacteria 1511
73 Ga0495632_0002668 3300046519 Bacteria 13375
74 Ga0495632_0002913 3300046519 Bacteria 12567
75 Ga0495632_0006474 3300046519 Bacteria 7522
76 Ga0495632_0016537 3300046519 Bacteria 4100
77 Ga0495643_0000273 3300046522 Bacteria 73816
78 Ga0495648_0001287 3300046524 Bacteria 25017
79 Ga0495648_0001474 3300046524 Bacteria 23023
80 Ga0495648_0020060 3300046524 Bacteria 4676
81 Ga0495642_0001546 3300046528 Bacteria 10178
82 Ga0495654_0001546 3300046530 Bacteria 15614
83 Ga0495654_0002224 3300046530 Bacteria 12580
84 Ga0495654_0002551 3300046530 Bacteria 11658
85 Ga0495654_0004037 3300046530 Bacteria 8821
86 Ga0495654_0007708 3300046530 Bacteria 5990
87 Ga0495609_0001125 3300046538 Bacteria 18524
88 Ga0495609_0002181 3300046538 Bacteria 12311
89 Ga0495609_0017064 3300046538 Bacteria 3376
90 Ga0495597_0003484 3300046542 Bacteria 9139
91 Ga0495597_0007153 3300046542 Bacteria 5702
92 Ga0495622_0030257 3300046557 Bacteria 2530
93 Ga0495633_0000819 3300046558 Bacteria 27526
94 Ga0495611_0004855 3300046648 Bacteria 5777
95 Ga0495611_0014432 3300046648 Bacteria 3374
96 Ga0495625_0005406 3300046660 Bacteria 11663
97 Ga0495625_0114786 3300046660 Bacteria 1838
98 Ga0495661_0000097 3300046665 Bacteria 107784
99 Ga0495661_0000108 3300046665 Bacteria 99099
100 Ga0495671_0000754 3300046692 Bacteria 23217
101 Ga0495671_0001199 3300046692 Bacteria 17742
102 Ga0495671_0004151 3300046692 Bacteria 8727
103 Ga0495671_0016785 3300046692 Bacteria 3903
104 Ga0495671_0029908 3300046692 Bacteria 2793
105 Ga0495671_0046376 3300046692 Bacteria 2173
106 Ga0495671_0049363 3300046692 Bacteria 2098
107 Ga0495671_0049767 3300046692 Bacteria 2088
108 Ga0495649_0003540 3300046694 Bacteria 10493
109 Ga0495649_0005127 3300046694 Bacteria 8405
110 Ga0495660_0067263 3300046810 Bacteria 1909
111 Ga0495660_0077064 3300046810 Bacteria 1755
112 Ga0495581_0001769 3300047315 Bacteria 12064
113 Ga0495672_0002080 3300047320 Bacteria 18774
114 Ga0495672_0004042 3300047320 Bacteria 12257
115 Ga0495672_0143276 3300047320 Bacteria 1246
116 Ga0495680_0022045 3300047322 Bacteria 5319
117 Ga0495683_0002151 3300047323 Bacteria 12116
118 Ga0495687_052640 3300047443 Bacteria 1720
119 Ga0495679_000852 3300047446 Bacteria 19302
120 Ga0495673_0016918 3300047469 Bacteria 3716
121 Ga0495681_0006335 3300047470 Bacteria 7791
122 Ga0495686_0001428 3300047472 Bacteria 26105
123 Ga0495626_0000192 3300048091 Bacteria 74170
124 Ga0495626_0000718 3300048091 Bacteria 30972
125 Ga0495626_0000842 3300048091 Bacteria 27497
126 Ga0495626_0003566 3300048091 Bacteria 9927
127 Ga0495626_0003738 3300048091 Bacteria 9607
128 Ga0495626_0004595 3300048091 Bacteria 8414
129 Ga0496110_0063192 3300048913 Bacteria 3271
130 Ga0496116_0000851 3300048919 Bacteria 38161
131 Ga0496116_0009145 3300048919 Bacteria 8488
132 Ga0496117_0001667 3300048920 Bacteria 31036
133 Ga0496117_0046833 3300048920 Bacteria 3107
134 Ga0496118_0001578 3300048921 Bacteria 33807
135 Ga0496118_0021401 3300048921 Bacteria 5692
136 Ga0496119_0036642 3300048922 Bacteria 3199
137 Ga0496120_0006553 3300048923 Bacteria 8899
138 Ga0496122_0084071 3300048925 Bacteria 2204
139 Ga0496122_0115880 3300048925 Bacteria 1744
140 Ga0496123_0033580 3300048926 Bacteria 3691
141 Ga0496124_0006597 3300048927 Bacteria 12605
142 Ga0496124_0008510 3300048927 Bacteria 10717
143 Ga0496124_0009642 3300048927 Bacteria 9892
144 Ga0496124_0171447 3300048927 Bacteria 1680
145 Ga0496124_0185504 3300048927 Bacteria 1597
146 Ga0496125_0000506 3300048928 Bacteria 67688
147 Ga0496125_0000930 3300048928 Bacteria 45986
148 Ga0496125_0225525 3300048928 Bacteria 1203
149 Ga0496126_0011186 3300048929 Bacteria 9312
150 Ga0496126_0016734 3300048929 Bacteria 7324
151 Ga0496126_0020277 3300048929 Bacteria 6524
152 Ga0496126_0169342 3300048929 Bacteria 1862
153 Ga0495682_0000147 3300049460 Bacteria 61080
154 Ga0501235_001830 3300049669 Bacteria 4558
155 Ga0501240_000023 3300049673 Bacteria 12662

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046515 Ga0495620_0000254 Ga0495620_0000254_38491_39390 284
2 3300046515 Ga0495620_0000122 Ga0495620_0000122_40203_41132 290
3 3300041407 Ga0439447_004847 Ga0439447_004847_3247_4143 293
4 3300042006 Ga0439432_001505 Ga0439432_001505_5513_6409 293
5 3300046501 Ga0495607_0153299 Ga0495607_0153299_202_1140 297
6 3300046692 Ga0495671_0000754 Ga0495671_0000754_2431_3375 299
7 3300048928 Ga0496125_0225525 Ga0496125_0225525_16_921 301
8 3300046463 Ga0495653_0004174 Ga0495653_0004174_2483_3394 302
9 3300046458 Ga0495591_000027 Ga0495591_000027_88547_89476 309
10 3300046530 Ga0495654_0004037 Ga0495654_0004037_550_1479 309
11 3300006058 Ga0075432_10000709 Ga0075432_100007094 315
12 3300027907 Ga0207428_10006831 Ga0207428_100068319 315
13 3300046519 Ga0495632_0002668 Ga0495632_0002668_9927_10952 315
14 3300046648 Ga0495611_0014432 Ga0495611_0014432_201_1226 315
15 3300031548 Ga0307408_100098028 Ga0307408_1000980282 316
16 3300046694 Ga0495649_0005127 Ga0495649_0005127_7007_8104 320
17 iso_pu_bacteria 8052494512 8052499700 321
18 iso_pu_bacteria 2554235231 2555246304 322
19 iso_pu_bacteria 2599185310 2599987528 322
20 iso_pu_bacteria 2599185312 2600002083 322
21 iso_pu_bacteria 2600255283 2601626888 322
22 iso_pu_bacteria 2816332298 2817488265 322
23 iso_pu_bacteria 2842815866 2842819932 322
24 iso_pu_bacteria 2842849001 2842851453 322
25 iso_pu_bacteria 2844665904 2844668255 322
26 iso_pu_bacteria 2912963787 2912968254 322
27 iso_pu_bacteria 2919697872 2919702151 322
28 iso_pu_bacteria 8019775933 8019779992 322
29 iso_pu_bacteria 8056115690 8056116021 322
30 3300025935 Ga0207709_10007231 Ga0207709_100072314 323
31 3300030731 Ga0316177_1156267 Ga0316177_11562674 323
32 3300048925 Ga0496122_0084071 Ga0496122_0084071_263_1279 323
33 3300048926 Ga0496123_0033580 Ga0496123_0033580_2590_3606 323
34 3300009036 Ga0105244_10005172 Ga0105244_100051721 325
35 3300025728 Ga0207655_1000848 Ga0207655_100084813 325
36 3300046499 Ga0495594_0045822 Ga0495594_0045822_999_2021 325
37 3300046501 Ga0495607_0003664 Ga0495607_0003664_2403_3425 325
38 3300046507 Ga0495606_0020416 Ga0495606_0020416_2484_3461 325
39 3300046660 Ga0495625_0114786 Ga0495625_0114786_464_1441 325
40 3300046665 Ga0495661_0000108 Ga0495661_0000108_10871_11893 325
41 3300046692 Ga0495671_0029908 Ga0495671_0029908_620_1597 325
42 3300046692 Ga0495671_0049363 Ga0495671_0049363_373_1395 325
43 3300048091 Ga0495626_0000718 Ga0495626_0000718_13856_14833 325
44 iso_pu_bacteria 2825651385 2825654406 325
45 iso_pu_bacteria 8056125926 8056126780 325
46 iso_pu_bacteria 8056166840 8056170265 325
47 3300003323 rootH1_10219919 rootH1_102199192 326
48 3300005288 Ga0065714_10065426 Ga0065714_100654263 326
49 3300006946 Ga0079104_1000422 Ga0079104_10004222 326
50 3300009011 Ga0105251_10000027 Ga0105251_1000002750 326
51 3300009011 Ga0105251_10019004 Ga0105251_100190041 326
52 3300009011 Ga0105251_10032990 Ga0105251_100329901 326
53 3300009036 Ga0105244_10007324 Ga0105244_100073242 326
54 3300009036 Ga0105244_10012220 Ga0105244_100122201 326
55 3300009092 Ga0105250_10000107 Ga0105250_100001077 326
56 3300009092 Ga0105250_10001443 Ga0105250_100014435 326
57 3300009092 Ga0105250_10001936 Ga0105250_100019366 326
58 3300009092 Ga0105250_10002693 Ga0105250_100026939 326
59 3300009148 Ga0105243_10002361 Ga0105243_100023613 326
60 3300015261 Ga0182006_1000235 Ga0182006_10002353 326
61 3300015261 Ga0182006_1000393 Ga0182006_10003932 326
62 3300015261 Ga0182006_1001234 Ga0182006_100123413 326
63 3300015262 Ga0182007_10001174 Ga0182007_1000117411 326
64 3300015265 Ga0182005_1003113 Ga0182005_10031132 326
65 3300025711 Ga0207696_1000020 Ga0207696_1000020164 326
66 3300025711 Ga0207696_1000172 Ga0207696_100017232 326
67 3300025711 Ga0207696_1000605 Ga0207696_10006057 326
68 3300025711 Ga0207696_1002652 Ga0207696_10026521 326
69 3300025728 Ga0207655_1000275 Ga0207655_100027516 326
70 3300025728 Ga0207655_1017009 Ga0207655_10170093 326
71 3300025735 Ga0207713_1000077 Ga0207713_100007794 326
72 3300025735 Ga0207713_1001923 Ga0207713_10019237 326
73 3300025735 Ga0207713_1017559 Ga0207713_10175595 326
74 3300025735 Ga0207713_1024391 Ga0207713_10243914 326
75 3300025735 Ga0207713_1064575 Ga0207713_10645751 326
76 3300025935 Ga0207709_10002252 Ga0207709_100022527 326
77 3300027111 Ga0209281_1000167 Ga0209281_10001671 326
78 3300027312 Ga0209371_1000207 Ga0209371_100020723 326
79 3300027907 Ga0207428_10002261 Ga0207428_1000226114 326
80 3300030500 Ga0268256_1000226 Ga0268256_100022650 326
81 3300031548 Ga0307408_100232294 Ga0307408_1002322941 326
82 3300041411 Ga0439466_0022324 Ga0439466_0022324_343_1371 326
83 3300042006 Ga0439432_040848 Ga0439432_040848_231_1259 326
84 3300042145 Ga0450906_012220 Ga0450906_012220_257_1282 326
85 3300046452 Ga0495617_002010 Ga0495617_002010_2447_3472 326
86 3300046453 Ga0495627_000732 Ga0495627_000732_14759_15784 326
87 3300046453 Ga0495627_009495 Ga0495627_009495_2477_3502 326
88 3300046458 Ga0495591_000316 Ga0495591_000316_2461_3486 326
89 3300046458 Ga0495591_006864 Ga0495591_006864_694_1674 326
90 3300046460 Ga0495638_0005236 Ga0495638_0005236_2473_3498 326
91 3300046460 Ga0495638_0170224 Ga0495638_0170224_242_1222 326
92 3300046471 Ga0495650_0047055 Ga0495650_0047055_199_1179 326
93 3300046475 Ga0495639_0128579 Ga0495639_0128579_197_1177 326
94 3300046492 Ga0495585_0064416 Ga0495585_0064416_708_1733 326
95 3300046506 Ga0495583_0001648 Ga0495583_0001648_2496_3479 326
96 3300046506 Ga0495583_0006551 Ga0495583_0006551_2624_3649 326
97 3300046512 Ga0495610_0001637 Ga0495610_0001637_16222_17247 326
98 3300046512 Ga0495610_0008438 Ga0495610_0008438_317_1297 326
99 3300046512 Ga0495610_0068017 Ga0495610_0068017_452_1432 326
100 3300046513 Ga0495616_0054993 Ga0495616_0054993_753_1733 326
101 3300046515 Ga0495620_0064699 Ga0495620_0064699_346_1326 326
102 3300046519 Ga0495632_0002913 Ga0495632_0002913_9396_10376 326
103 3300046519 Ga0495632_0006474 Ga0495632_0006474_6292_7272 326
104 3300046519 Ga0495632_0016537 Ga0495632_0016537_396_1379 326
105 3300046522 Ga0495643_0000273 Ga0495643_0000273_60791_61828 326
106 3300046524 Ga0495648_0001287 Ga0495648_0001287_2365_3354 326
107 3300046524 Ga0495648_0001474 Ga0495648_0001474_19539_20564 326
108 3300046524 Ga0495648_0020060 Ga0495648_0020060_474_1454 326
109 3300046528 Ga0495642_0001546 Ga0495642_0001546_2430_3410 326
110 3300046530 Ga0495654_0001546 Ga0495654_0001546_12171_13151 326
111 3300046530 Ga0495654_0002224 Ga0495654_0002224_341_1321 326
112 3300046530 Ga0495654_0002551 Ga0495654_0002551_2414_3439 326
113 3300046530 Ga0495654_0007708 Ga0495654_0007708_4824_5804 326
114 3300046538 Ga0495609_0001125 Ga0495609_0001125_14840_15865 326
115 3300046538 Ga0495609_0002181 Ga0495609_0002181_9603_10628 326
116 3300046538 Ga0495609_0017064 Ga0495609_0017064_330_1310 326
117 3300046542 Ga0495597_0003484 Ga0495597_0003484_2133_3158 326
118 3300046542 Ga0495597_0007153 Ga0495597_0007153_2157_3182 326
119 3300046557 Ga0495622_0030257 Ga0495622_0030257_278_1303 326
120 3300046558 Ga0495633_0000819 Ga0495633_0000819_7263_8288 326
121 3300046648 Ga0495611_0004855 Ga0495611_0004855_2397_3422 326
122 3300046660 Ga0495625_0005406 Ga0495625_0005406_428_1408 326
123 3300046665 Ga0495661_0000097 Ga0495661_0000097_5674_6654 326
124 3300046692 Ga0495671_0001199 Ga0495671_0001199_2483_3466 326
125 3300046692 Ga0495671_0004151 Ga0495671_0004151_509_1534 326
126 3300046692 Ga0495671_0016785 Ga0495671_0016785_241_1221 326
127 3300046692 Ga0495671_0046376 Ga0495671_0046376_169_1149 326
128 3300046692 Ga0495671_0049767 Ga0495671_0049767_709_1734 326
129 3300046694 Ga0495649_0003540 Ga0495649_0003540_710_1693 326
130 3300046810 Ga0495660_0067263 Ga0495660_0067263_76_1056 326
131 3300046810 Ga0495660_0077064 Ga0495660_0077064_706_1731 326
132 3300047315 Ga0495581_0001769 Ga0495581_0001769_8740_9765 326
133 3300047320 Ga0495672_0002080 Ga0495672_0002080_15277_16302 326
134 3300047320 Ga0495672_0004042 Ga0495672_0004042_2494_3477 326
135 3300047320 Ga0495672_0143276 Ga0495672_0143276_243_1223 326
136 3300047322 Ga0495680_0022045 Ga0495680_0022045_1152_2177 326
137 3300047323 Ga0495683_0002151 Ga0495683_0002151_2435_3460 326
138 3300047443 Ga0495687_052640 Ga0495687_052640_118_1098 326
139 3300047446 Ga0495679_000852 Ga0495679_000852_2315_3340 326
140 3300047469 Ga0495673_0016918 Ga0495673_0016918_2309_3289 326
141 3300047470 Ga0495681_0006335 Ga0495681_0006335_979_2004 326
142 3300047472 Ga0495686_0001428 Ga0495686_0001428_5342_6367 326
143 3300048091 Ga0495626_0000192 Ga0495626_0000192_2439_3464 326
144 3300048091 Ga0495626_0000842 Ga0495626_0000842_21360_22385 326
145 3300048091 Ga0495626_0003566 Ga0495626_0003566_818_1798 326
146 3300048091 Ga0495626_0003738 Ga0495626_0003738_425_1450 326
147 3300048091 Ga0495626_0004595 Ga0495626_0004595_5257_6237 326
148 3300048913 Ga0496110_0063192 Ga0496110_0063192_1114_2139 326
149 3300048919 Ga0496116_0000851 Ga0496116_0000851_34659_35684 326
150 3300048919 Ga0496116_0009145 Ga0496116_0009145_3956_4981 326
151 3300048920 Ga0496117_0001667 Ga0496117_0001667_27741_28721 326
152 3300048920 Ga0496117_0046833 Ga0496117_0046833_227_1252 326
153 3300048921 Ga0496118_0001578 Ga0496118_0001578_370_1350 326
154 3300048921 Ga0496118_0021401 Ga0496118_0021401_2391_3416 326
155 3300048922 Ga0496119_0036642 Ga0496119_0036642_431_1411 326
156 3300048923 Ga0496120_0006553 Ga0496120_0006553_5480_6460 326
157 3300048925 Ga0496122_0115880 Ga0496122_0115880_517_1542 326
158 3300048927 Ga0496124_0006597 Ga0496124_0006597_2424_3449 326
159 3300048927 Ga0496124_0008510 Ga0496124_0008510_1582_2607 326
160 3300048927 Ga0496124_0009642 Ga0496124_0009642_6459_7439 326
161 3300048927 Ga0496124_0171447 Ga0496124_0171447_614_1639 326
162 3300048927 Ga0496124_0185504 Ga0496124_0185504_91_1116 326
163 3300048928 Ga0496125_0000506 Ga0496125_0000506_4374_5399 326
164 3300048928 Ga0496125_0000930 Ga0496125_0000930_31480_32502 326
165 3300048929 Ga0496126_0011186 Ga0496126_0011186_7805_8785 326
166 3300048929 Ga0496126_0016734 Ga0496126_0016734_2126_3106 326
167 3300048929 Ga0496126_0020277 Ga0496126_0020277_2733_3755 326
168 3300048929 Ga0496126_0169342 Ga0496126_0169342_768_1793 326
169 3300049460 Ga0495682_0000147 Ga0495682_0000147_18594_19574 326
170 3300049669 Ga0501235_001830 Ga0501235_001830_257_1282 326
171 3300049673 Ga0501240_000023 Ga0501240_000023_9428_10408 326
172 iso_pu_bacteria 2842837860 2842838493 326

Structural Annotation

Top 5 Hits

ID Description Score Start End
3nrw-assembly1.cif.gz_A crystal structure of the n-terminal domain of phage integrase/site-specific recombinase (tnp) from haloarcula marismortui, northeast structural genomics consortium target hmr208a 0.7492 15 120
3nrw-assembly1.cif.gz_A crystal structure of the n-terminal domain of phage integrase/site-specific recombinase (tnp) from haloarcula marismortui, northeast structural genomics consortium target hmr208a 0.7104 15 120
5crx-assembly1.cif.gz_B-2 asymmetric dna-bending in the cre-loxp site-specific recombination synapse 0.3872 24 227
6emy-assembly1.cif.gz_B structure of the tn1549 transposon integrase (aa 82-397, y379f) in complex with transposon right end dna 0.3263 23 326
1ouq-assembly1.cif.gz_A crystal structure of wild-type cre recombinase-loxp synapse 0.3171 24 322
ID Description Score Start End Superfamily
af_P9WF33_5_106_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.7544 22 108 1.10.150.130
3nrwA00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.7428 17 119 1.10.150.130
3nrwA00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.6841 17 119 1.10.150.130
af_P9WF33_5_106_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.6492 22 108 1.10.150.130
1pvpA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.6485 24 122 1.10.150.130
ID Description Score Start End GO Terms
AF-A0A1W2EVX4-F1-model_v4 Uncharacterized protein 0.8589 169 264
AF-A0A0Q4EKF4-F1-model_v4 Integrase 0.8291 1 106 GO:0003677
AF-A0A522X9P9-F1-model_v4 Integrase 0.827 16 137
AF-A0A2W0ECE8-F1-model_v4 Integrase 0.8229 1 115 GO:0003677
AF-A0A2S5CIQ1-F1-model_v4 Uncharacterized protein 0.8201 25 131

Feature Viewer

pLDDT pTM Quality
68.71 0.54 Medium
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Predicted Structure (AlphaFold2)

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