F260740
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 172 | 146 | 344 | 354 |
Family's Representative Sequence
| Representative Sequence | 3300013296|Ga0157374_10134683|Ga0157374_101346833 |
| Length | 386 |
| Sequence | MSITVDVPTNPADQPRVFPSGALGGTVADGGAPPAPAAAPAEDGAAHLTEAELSAQLVGDARQVRVLTGDRPTGPLHLGHYLGSLRNRVRLQDAGADMFVLVADYQVITDRDASASIADFALGLVADYLAVGLDPARSTVFAHSAVPALNQLLLPLMSLISVPELERNPTTKAEAAASGRPALSALMLTYPVHQAADILFCRSDLVPVGRDQLPHLEVTRTVARRFNTRYAPVFTEPRALISDAPSVLGSDGHKMSKSHGNTIPLQATADQTAAVIKGFKTDTDRHITFDPEARPEVSNLVLITALCAGEEPAAVAERIGSGGAAALKRAATEAVNEHLRPIRARRAELAGERGYLAAILRRGTERATVEAEATLALVRQAMGMAY |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 2 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 3 | 3300002772 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS | Metagenome | Endosphere |
| 4 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 5 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 7 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 8 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Metagenome | Rhizosphere |
| 11 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 17 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 20 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 21 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 22 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 23 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 25 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 27 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 28 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 30 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 31 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 33 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 38 | 3300013250 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 | Metagenome | Rhizosphere |
| 39 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300025231 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 43 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 44 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 45 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 72 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 75 | 3300031889 | Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO | Metagenome | Rhizosphere |
| 76 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 77 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 78 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 79 | 3300041443 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG | Metagenome | Rhizoplane |
| 80 | 3300041451 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG | Metagenome | Rhizoplane |
| 81 | 3300041452 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG | Metagenome | Rhizoplane |
| 82 | 3300041453 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG | Metagenome | Rhizoplane |
| 83 | 3300041459 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG | Metagenome | Rhizoplane |
| 84 | 3300041462 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG | Metagenome | Rhizoplane |
| 85 | 3300041496 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG | Metagenome | Unclassified |
| 86 | 3300041498 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG | Metagenome | Unclassified |
| 87 | 3300041509 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG | Metagenome | Unclassified |
| 88 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 89 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 90 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 91 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 92 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 93 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 94 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 104 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 105 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 106 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 107 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 108 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 109 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 110 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 111 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 112 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 113 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 114 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 115 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 116 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 117 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 118 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 119 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 120 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 121 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 123 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300053078 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300053080 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere | Metagenome | Endosphere |
| 126 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 127 | 2547132424 | Nocardia nova SH22a | Isolate | Unclassified |
| 128 | 2643221542 | Microbacterium sp. Root1433D1 | Isolate | Unclassified |
| 129 | 2643221553 | Microbacterium sp. Root553 | Isolate | Unclassified |
| 130 | 2643221630 | Microbacterium sp. Root322 | Isolate | Unclassified |
| 131 | 2643221679 | Angustibacter sp. Root456 | Isolate | Unclassified |
| 132 | 2738543011 | Rhodococcus sp. OK611 | Isolate | Unclassified |
| 133 | 2848551377 | Brachybacterium saurashtrense DSM 23186 | Isolate | Unclassified |
| 134 | 2852646457 | Microbacterium sp. AK031 | Isolate | Rhizosphere |
| 135 | 2855683550 | Micromonospora sp. RP3T | Isolate | Unclassified |
| 136 | 2884763398 | Leifsonia sp. PS1209 | Isolate | Stem Tuber |
| 137 | 2887443736 | Ruania rhizosphaerae LNNU 22110 | Isolate | Rhizosphere |
| 138 | 2889300758 | Rhodococcus sp. PvR099 | Isolate | Rhizosphere |
| 139 | 2904765812 | Rhodococcus fascians 1590 | Isolate | Rhizosphere |
| 140 | 2904770941 | Rhodococcus fascians 1339 | Isolate | Rhizosphere |
| 141 | 2906799679 | Microbacterium karelineae TRM80801 | Isolate | Unclassified |
| 142 | 2908811453 | Rhodococcus sp. 1R11 | Isolate | Unclassified |
| 143 | 2919420072 | Rhodococcus fascians 3241 | Isolate | Rhizosphere |
| 144 | 2919432681 | Rhodococcus sp. 3258 | Isolate | Rhizosphere |
| 145 | 2920879853 | Kocuria salina CV6 | Isolate | Unclassified |
| 146 | 2939743619 | Rhodococcus sp. PvR044 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 87.79 |
| Metatranscriptomes | 0 |
| Isolates | 12.21 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 5.23 |
| Nodule | 0 |
| Rhizoplane | 16.28 |
| Rhizosphere | 67.44 |
| Stem | 0 |
| Stem Tuber | 0.58 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0157374_10134683 | 3300013296 | Bacteria | 2394 |
| 2 | JGI25162J39368_1004386 | 3300002737 | Bacteria | 3310 |
| 3 | JGI25164J39214_1000156 | 3300002772 | Bacteria | 64607 |
| 4 | JGI25165J46597_1000005 | 3300003214 | Bacteria | 623702 |
| 5 | Ga0070670_100105572 | 3300005331 | Bacteria | 2427 |
| 6 | Ga0068869_100038495 | 3300005334 | Bacteria | 3409 |
| 7 | Ga0070682_100086622 | 3300005337 | Bacteria | 2040 |
| 8 | Ga0070660_100132170 | 3300005339 | Bacteria | 1998 |
| 9 | Ga0070661_100043735 | 3300005344 | Bacteria | 3272 |
| 10 | Ga0070692_10020535 | 3300005345 | Bacteria | 3204 |
| 11 | Ga0070668_100042836 | 3300005347 | Bacteria | 3469 |
| 12 | Ga0070669_100059323 | 3300005353 | Bacteria | 2810 |
| 13 | Ga0070675_100007621 | 3300005354 | Bacteria | 8374 |
| 14 | Ga0070671_100174627 | 3300005355 | Bacteria | 1818 |
| 15 | Ga0070659_100075049 | 3300005366 | Bacteria | 2695 |
| 16 | Ga0070700_100000184 | 3300005441 | Bacteria | 35554 |
| 17 | Ga0070663_100076127 | 3300005455 | Bacteria | 2453 |
| 18 | Ga0070662_100204455 | 3300005457 | Bacteria | 1569 |
| 19 | Ga0070706_100014687 | 3300005467 | Bacteria | 7234 |
| 20 | Ga0070706_100141392 | 3300005467 | Bacteria | 2247 |
| 21 | Ga0070707_100040381 | 3300005468 | Bacteria | 4464 |
| 22 | Ga0070698_100000404 | 3300005471 | Bacteria | 45800 |
| 23 | Ga0070684_100197711 | 3300005535 | Bacteria | 1831 |
| 24 | Ga0070665_100226758 | 3300005548 | Bacteria | 1868 |
| 25 | Ga0068855_100599030 | 3300005563 | Bacteria | 1189 |
| 26 | Ga0070664_100005573 | 3300005564 | Bacteria | 10115 |
| 27 | Ga0068857_100028706 | 3300005577 | Bacteria | 4909 |
| 28 | Ga0068854_100003837 | 3300005578 | Bacteria | 9413 |
| 29 | Ga0070702_100199761 | 3300005615 | Bacteria | 1323 |
| 30 | Ga0068861_100011921 | 3300005719 | Bacteria | 6054 |
| 31 | Ga0068851_10170133 | 3300005834 | Bacteria | 1202 |
| 32 | Ga0070717_10416750 | 3300006028 | Bacteria | 1208 |
| 33 | Ga0075363_100012091 | 3300006048 | Bacteria | 4151 |
| 34 | Ga0111539_10006118 | 3300009094 | Bacteria | 15538 |
| 35 | Ga0105245_10001368 | 3300009098 | Bacteria | 22081 |
| 36 | Ga0105245_10005650 | 3300009098 | Bacteria | 10992 |
| 37 | Ga0105245_10198322 | 3300009098 | Bacteria | 1926 |
| 38 | Ga0105243_10009952 | 3300009148 | Bacteria | 7228 |
| 39 | Ga0105243_10187839 | 3300009148 | Bacteria | 1802 |
| 40 | Ga0105241_10287408 | 3300009174 | Bacteria | 1407 |
| 41 | Ga0105249_10370312 | 3300009553 | Bacteria | 1456 |
| 42 | Ga0171462_1004 | 3300013250 | Bacteria | 678877 |
| 43 | Ga0157372_10000123 | 3300013307 | Bacteria | 83350 |
| 44 | Ga0157372_10148809 | 3300013307 | Bacteria | 2701 |
| 45 | Ga0157377_10134562 | 3300014745 | Bacteria | 1513 |
| 46 | Ga0157376_10112774 | 3300014969 | Bacteria | 2396 |
| 47 | Ga0207427_100028 | 3300025231 | Bacteria | 388949 |
| 48 | Ga0209437_100211 | 3300025233 | Bacteria | 108544 |
| 49 | Ga0209233_1000001 | 3300025261 | Bacteria | 2992747 |
| 50 | Ga0207688_10064166 | 3300025901 | Bacteria | 2072 |
| 51 | Ga0207647_10024523 | 3300025904 | Bacteria | 3977 |
| 52 | Ga0207684_10076316 | 3300025910 | Bacteria | 2848 |
| 53 | Ga0207684_10150695 | 3300025910 | Bacteria | 2001 |
| 54 | Ga0207671_10001941 | 3300025914 | Bacteria | 22824 |
| 55 | Ga0207657_10084857 | 3300025919 | Bacteria | 2653 |
| 56 | Ga0207646_10075500 | 3300025922 | Bacteria | 3012 |
| 57 | Ga0207681_10129265 | 3300025923 | Bacteria | 1865 |
| 58 | Ga0207694_10017042 | 3300025924 | Bacteria | 5487 |
| 59 | Ga0207650_10082667 | 3300025925 | Bacteria | 2438 |
| 60 | Ga0207659_10027399 | 3300025926 | Bacteria | 3858 |
| 61 | Ga0207687_10002979 | 3300025927 | Bacteria | 11474 |
| 62 | Ga0207687_10028136 | 3300025927 | Bacteria | 3776 |
| 63 | Ga0207687_10083871 | 3300025927 | Bacteria | 2308 |
| 64 | Ga0207687_10254952 | 3300025927 | Bacteria | 1396 |
| 65 | Ga0207644_10189336 | 3300025931 | Bacteria | 1617 |
| 66 | Ga0207690_10018143 | 3300025932 | Bacteria | 4312 |
| 67 | Ga0207706_10061221 | 3300025933 | Bacteria | 3315 |
| 68 | Ga0207709_10007026 | 3300025935 | Bacteria | 6294 |
| 69 | Ga0207709_10116946 | 3300025935 | Bacteria | 1793 |
| 70 | Ga0207661_10102409 | 3300025944 | Bacteria | 2407 |
| 71 | Ga0207679_10003485 | 3300025945 | Bacteria | 9729 |
| 72 | Ga0207712_10267458 | 3300025961 | Bacteria | 1389 |
| 73 | Ga0207668_10183567 | 3300025972 | Bacteria | 1652 |
| 74 | Ga0207677_10220986 | 3300026023 | Bacteria | 1519 |
| 75 | Ga0207703_10047806 | 3300026035 | Bacteria | 3451 |
| 76 | Ga0207678_10029707 | 3300026067 | Bacteria | 4772 |
| 77 | Ga0207708_10000023 | 3300026075 | Bacteria | 176615 |
| 78 | Ga0207674_10019015 | 3300026116 | Bacteria | 7444 |
| 79 | Ga0207675_100117344 | 3300026118 | Bacteria | 2516 |
| 80 | Ga0207698_10048879 | 3300026142 | Bacteria | 3215 |
| 81 | Ga0207428_10218210 | 3300027907 | Bacteria | 1431 |
| 82 | Ga0268266_10396951 | 3300028379 | Bacteria | 1303 |
| 83 | Ga0268265_10057254 | 3300028380 | Bacteria | 2970 |
| 84 | Ga0307410_10098654 | 3300031852 | Bacteria | 2090 |
| 85 | Ga0326468_10000862 | 3300031889 | Bacteria | 3000 |
| 86 | Ga0307407_10058695 | 3300031903 | Bacteria | 2238 |
| 87 | Ga0307416_100080505 | 3300032002 | Bacteria | 2750 |
| 88 | Ga0307415_100179596 | 3300032126 | Bacteria | 1659 |
| 89 | Ga0307415_100205627 | 3300032126 | Bacteria | 1566 |
| 90 | Ga0451789_0406413 | 3300041443 | Bacteria | 7851 |
| 91 | Ga0451789_0917854 | 3300041443 | Bacteria | 2088 |
| 92 | Ga0451791_1516292 | 3300041451 | Bacteria | 5403 |
| 93 | Ga0451793_0525371 | 3300041452 | Bacteria | 1675 |
| 94 | Ga0451793_0676844 | 3300041452 | Bacteria | 13181 |
| 95 | Ga0451793_1583151 | 3300041452 | Bacteria | 2188 |
| 96 | Ga0451797_0223711 | 3300041453 | Bacteria | 1944 |
| 97 | Ga0451800_1302679 | 3300041459 | Bacteria | 1435 |
| 98 | Ga0451806_219674 | 3300041462 | Bacteria | 1564 |
| 99 | Ga0451839_1315300 | 3300041496 | Bacteria | 6067 |
| 100 | Ga0451841_0989005 | 3300041498 | Bacteria | 4390 |
| 101 | Ga0451843_0319612 | 3300041509 | Bacteria | 5157 |
| 102 | Ga0451853_3125568 | 3300041512 | Bacteria | 2987 |
| 103 | Ga0466972_0121842 | 3300044658 | Bacteria | 1230 |
| 104 | Ga0466961_0115726 | 3300044693 | Bacteria | 1685 |
| 105 | Ga0466970_0028098 | 3300044765 | Bacteria | 2954 |
| 106 | Ga0466958_0181660 | 3300045836 | Bacteria | 1335 |
| 107 | Ga0466967_0203899 | 3300045976 | Bacteria | 1874 |
| 108 | Ga0495627_000522 | 3300046453 | Bacteria | 31814 |
| 109 | Ga0495592_0083659 | 3300046454 | Bacteria | 2304 |
| 110 | Ga0495603_0159048 | 3300046455 | Bacteria | 1311 |
| 111 | Ga0495629_0105461 | 3300046459 | Bacteria | 1966 |
| 112 | Ga0495651_0006365 | 3300046462 | Bacteria | 9034 |
| 113 | Ga0495651_0144250 | 3300046462 | Bacteria | 1723 |
| 114 | Ga0495664_0091383 | 3300046477 | Bacteria | 1830 |
| 115 | Ga0495652_0004440 | 3300046529 | Bacteria | 13415 |
| 116 | Ga0495600_0038215 | 3300046809 | Bacteria | 3123 |
| 117 | Ga0495581_0129079 | 3300047315 | Bacteria | 1473 |
| 118 | Ga0496100_0250766 | 3300048903 | Bacteria | 1309 |
| 119 | Ga0496102_0063002 | 3300048905 | Bacteria | 3395 |
| 120 | Ga0496104_0129248 | 3300048907 | Bacteria | 2426 |
| 121 | Ga0496104_0147566 | 3300048907 | Bacteria | 2259 |
| 122 | Ga0496105_0068240 | 3300048908 | Bacteria | 2937 |
| 123 | Ga0496106_0151842 | 3300048909 | Bacteria | 1828 |
| 124 | Ga0496108_0025514 | 3300048911 | Bacteria | 4871 |
| 125 | Ga0496108_0223586 | 3300048911 | Bacteria | 1636 |
| 126 | Ga0496109_0015708 | 3300048912 | Bacteria | 6605 |
| 127 | Ga0496109_0048815 | 3300048912 | Bacteria | 3851 |
| 128 | Ga0496110_0004558 | 3300048913 | Bacteria | 10759 |
| 129 | Ga0496110_0013371 | 3300048913 | Bacteria | 6783 |
| 130 | Ga0496111_0002085 | 3300048914 | Bacteria | 11924 |
| 131 | Ga0496111_0194405 | 3300048914 | Bacteria | 1508 |
| 132 | Ga0496114_0014113 | 3300048917 | Bacteria | 6405 |
| 133 | Ga0496114_0047066 | 3300048917 | Bacteria | 3586 |
| 134 | Ga0496114_0154218 | 3300048917 | Bacteria | 1994 |
| 135 | Ga0496114_0185039 | 3300048917 | Bacteria | 1820 |
| 136 | Ga0496115_0005745 | 3300048918 | Bacteria | 9035 |
| 137 | Ga0496126_0039602 | 3300048929 | Bacteria | 4372 |
| 138 | Ga0496126_0221542 | 3300048929 | Bacteria | 1589 |
| 139 | Ga0501034_0062332 | 3300049571 | Bacteria | 3744 |
| 140 | Ga0501038_0157790 | 3300049574 | Bacteria | 1846 |
| 141 | Ga0501048_0242271 | 3300049582 | Bacteria | 1280 |
| 142 | Ga0501067_0053920 | 3300049583 | Bacteria | 2228 |
| 143 | Ga0501072_0104901 | 3300049588 | Bacteria | 2247 |
| 144 | Ga0501079_0180149 | 3300049741 | Bacteria | 1649 |
| 145 | Ga0501044_0037053 | 3300049823 | Bacteria | 5099 |
| 146 | nmdc:mga08y16_10106_c1 | 3300050511 | Bacteria | 9906 |
| 147 | Ga0495601_0036296 | 3300053077 | Bacteria | 3077 |
| 148 | Ga0495601_0148179 | 3300053077 | Bacteria | 1532 |
| 149 | Ga0495612_0055349 | 3300053078 | Bacteria | 1635 |
| 150 | Ga0500635_0000171 | 3300053080 | Bacteria | 33661 |
| 151 | Ga0500573_0095103 | 3300053140 | Bacteria | 1680 |
| 152 | 2548694749 | 2547132424 | Bacteria | 8348532 |
| 153 | 2643732733 | 2643221542 | Bacteria | 3563959 |
| 154 | 2643786211 | 2643221553 | Bacteria | 3544260 |
| 155 | 2644171534 | 2643221630 | Bacteria | 3601215 |
| 156 | 2644445983 | 2643221679 | Bacteria | 3839507 |
| 157 | 2739236223 | 2738543011 | Bacteria | 5731169 |
| 158 | 2848552066 | 2848551377 | Bacteria | 3720646 |
| 159 | 2852648586 | 2852646457 | Bacteria | 3408613 |
| 160 | 2855684630 | 2855683550 | Bacteria | 7134265 |
| 161 | 2884767023 | 2884763398 | Bacteria | 4091164 |
| 162 | 2887445723 | 2887443736 | Bacteria | 4426037 |
| 163 | 2889304590 | 2889300758 | Bacteria | 5690814 |
| 164 | 2904769203 | 2904765812 | Bacteria | 5369154 |
| 165 | 2904774000 | 2904770941 | Bacteria | 5580202 |
| 166 | 2906800754 | 2906799679 | Bacteria | 4031749 |
| 167 | 2908811956 | 2908811453 | Bacteria | 5478616 |
| 168 | 2919420318 | 2919420072 | Bacteria | 5390363 |
| 169 | 2919433924 | 2919432681 | Bacteria | 5390474 |
| 170 | 2920883873 | 2920879853 | Bacteria | 4216831 |
| 171 | 2920883885 | 2920879853 | Bacteria | 4216831 |
| 172 | 2939745022 | 2939743619 | Bacteria | 5762299 |
| 173 | Ga0157374_10134683 | |||
| 174 | JGI25162J39368_1004386 | |||
| 175 | JGI25164J39214_1000156 | |||
| 176 | JGI25165J46597_1000005 | |||
| 177 | Ga0070670_100105572 | |||
| 178 | Ga0068869_100038495 | |||
| 179 | Ga0070682_100086622 | |||
| 180 | Ga0070660_100132170 | |||
| 181 | Ga0070661_100043735 | |||
| 182 | Ga0070692_10020535 | |||
| 183 | Ga0070668_100042836 | |||
| 184 | Ga0070669_100059323 | |||
| 185 | Ga0070675_100007621 | |||
| 186 | Ga0070671_100174627 | |||
| 187 | Ga0070659_100075049 | |||
| 188 | Ga0070700_100000184 | |||
| 189 | Ga0070663_100076127 | |||
| 190 | Ga0070662_100204455 | |||
| 191 | Ga0070706_100014687 | |||
| 192 | Ga0070706_100141392 | |||
| 193 | Ga0070707_100040381 | |||
| 194 | Ga0070698_100000404 | |||
| 195 | Ga0070684_100197711 | |||
| 196 | Ga0070665_100226758 | |||
| 197 | Ga0068855_100599030 | |||
| 198 | Ga0070664_100005573 | |||
| 199 | Ga0068857_100028706 | |||
| 200 | Ga0068854_100003837 | |||
| 201 | Ga0070702_100199761 | |||
| 202 | Ga0068861_100011921 | |||
| 203 | Ga0068851_10170133 | |||
| 204 | Ga0070717_10416750 | |||
| 205 | Ga0075363_100012091 | |||
| 206 | Ga0111539_10006118 | |||
| 207 | Ga0105245_10001368 | |||
| 208 | Ga0105245_10005650 | |||
| 209 | Ga0105245_10198322 | |||
| 210 | Ga0105243_10009952 | |||
| 211 | Ga0105243_10187839 | |||
| 212 | Ga0105241_10287408 | |||
| 213 | Ga0105249_10370312 | |||
| 214 | Ga0171462_1004 | |||
| 215 | Ga0157372_10000123 | |||
| 216 | Ga0157372_10148809 | |||
| 217 | Ga0157377_10134562 | |||
| 218 | Ga0157376_10112774 | |||
| 219 | Ga0207427_100028 | |||
| 220 | Ga0209437_100211 | |||
| 221 | Ga0209233_1000001 | |||
| 222 | Ga0207688_10064166 | |||
| 223 | Ga0207647_10024523 | |||
| 224 | Ga0207684_10076316 | |||
| 225 | Ga0207684_10150695 | |||
| 226 | Ga0207671_10001941 | |||
| 227 | Ga0207657_10084857 | |||
| 228 | Ga0207646_10075500 | |||
| 229 | Ga0207681_10129265 | |||
| 230 | Ga0207694_10017042 | |||
| 231 | Ga0207650_10082667 | |||
| 232 | Ga0207659_10027399 | |||
| 233 | Ga0207687_10002979 | |||
| 234 | Ga0207687_10028136 | |||
| 235 | Ga0207687_10083871 | |||
| 236 | Ga0207687_10254952 | |||
| 237 | Ga0207644_10189336 | |||
| 238 | Ga0207690_10018143 | |||
| 239 | Ga0207706_10061221 | |||
| 240 | Ga0207709_10007026 | |||
| 241 | Ga0207709_10116946 | |||
| 242 | Ga0207661_10102409 | |||
| 243 | Ga0207679_10003485 | |||
| 244 | Ga0207712_10267458 | |||
| 245 | Ga0207668_10183567 | |||
| 246 | Ga0207677_10220986 | |||
| 247 | Ga0207703_10047806 | |||
| 248 | Ga0207678_10029707 | |||
| 249 | Ga0207708_10000023 | |||
| 250 | Ga0207674_10019015 | |||
| 251 | Ga0207675_100117344 | |||
| 252 | Ga0207698_10048879 | |||
| 253 | Ga0207428_10218210 | |||
| 254 | Ga0268266_10396951 | |||
| 255 | Ga0268265_10057254 | |||
| 256 | Ga0307410_10098654 | |||
| 257 | Ga0326468_10000862 | |||
| 258 | Ga0307407_10058695 | |||
| 259 | Ga0307416_100080505 | |||
| 260 | Ga0307415_100179596 | |||
| 261 | Ga0307415_100205627 | |||
| 262 | Ga0451789_0406413 | |||
| 263 | Ga0451789_0917854 | |||
| 264 | Ga0451791_1516292 | |||
| 265 | Ga0451793_0525371 | |||
| 266 | Ga0451793_0676844 | |||
| 267 | Ga0451793_1583151 | |||
| 268 | Ga0451797_0223711 | |||
| 269 | Ga0451800_1302679 | |||
| 270 | Ga0451806_219674 | |||
| 271 | Ga0451839_1315300 | |||
| 272 | Ga0451841_0989005 | |||
| 273 | Ga0451843_0319612 | |||
| 274 | Ga0451853_3125568 | |||
| 275 | Ga0466972_0121842 | |||
| 276 | Ga0466961_0115726 | |||
| 277 | Ga0466970_0028098 | |||
| 278 | Ga0466958_0181660 | |||
| 279 | Ga0466967_0203899 | |||
| 280 | Ga0495627_000522 | |||
| 281 | Ga0495592_0083659 | |||
| 282 | Ga0495603_0159048 | |||
| 283 | Ga0495629_0105461 | |||
| 284 | Ga0495651_0006365 | |||
| 285 | Ga0495651_0144250 | |||
| 286 | Ga0495664_0091383 | |||
| 287 | Ga0495652_0004440 | |||
| 288 | Ga0495600_0038215 | |||
| 289 | Ga0495581_0129079 | |||
| 290 | Ga0496100_0250766 | |||
| 291 | Ga0496102_0063002 | |||
| 292 | Ga0496104_0129248 | |||
| 293 | Ga0496104_0147566 | |||
| 294 | Ga0496105_0068240 | |||
| 295 | Ga0496106_0151842 | |||
| 296 | Ga0496108_0025514 | |||
| 297 | Ga0496108_0223586 | |||
| 298 | Ga0496109_0015708 | |||
| 299 | Ga0496109_0048815 | |||
| 300 | Ga0496110_0004558 | |||
| 301 | Ga0496110_0013371 | |||
| 302 | Ga0496111_0002085 | |||
| 303 | Ga0496111_0194405 | |||
| 304 | Ga0496114_0014113 | |||
| 305 | Ga0496114_0047066 | |||
| 306 | Ga0496114_0154218 | |||
| 307 | Ga0496114_0185039 | |||
| 308 | Ga0496115_0005745 | |||
| 309 | Ga0496126_0039602 | |||
| 310 | Ga0496126_0221542 | |||
| 311 | Ga0501034_0062332 | |||
| 312 | Ga0501038_0157790 | |||
| 313 | Ga0501048_0242271 | |||
| 314 | Ga0501067_0053920 | |||
| 315 | Ga0501072_0104901 | |||
| 316 | Ga0501079_0180149 | |||
| 317 | Ga0501044_0037053 | |||
| 318 | nmdc:mga08y16_10106_c1 | |||
| 319 | Ga0495601_0036296 | |||
| 320 | Ga0495601_0148179 | |||
| 321 | Ga0495612_0055349 | |||
| 322 | Ga0500635_0000171 | |||
| 323 | Ga0500573_0095103 | |||
| 324 | 2548694749 | |||
| 325 | 2643732733 | |||
| 326 | 2643786211 | |||
| 327 | 2644171534 | |||
| 328 | 2644445983 | |||
| 329 | 2739236223 | |||
| 330 | 2848552066 | |||
| 331 | 2852648586 | |||
| 332 | 2855684630 | |||
| 333 | 2884767023 | |||
| 334 | 2887445723 | |||
| 335 | 2889304590 | |||
| 336 | 2904769203 | |||
| 337 | 2904774000 | |||
| 338 | 2906800754 | |||
| 339 | 2908811956 | |||
| 340 | 2919420318 | |||
| 341 | 2919433924 | |||
| 342 | 2920883873 | |||
| 343 | 2920883885 | |||
| 344 | 2939745022 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 7cms-assembly1.cif.gz_B | crystal structure of tryptophanyl-trna synthetase from bacillus stearothermophilus in complex with chuangxinmycin | 0.9103 | 25 | 346 |
| 2a4m-assembly1.cif.gz_A | structure of trprs ii bound to atp | 0.9042 | 26 | 346 |
| 7cms-assembly1.cif.gz_B | crystal structure of tryptophanyl-trna synthetase from bacillus stearothermophilus in complex with chuangxinmycin | 0.8997 | 25 | 346 |
| 5ekd-assembly1.cif.gz_A | human mitochondrial tryptophanyl-trna synthetase bound by indolmycin and mn*atp. | 0.8993 | 25 | 342 |
| 1d2r-assembly3.cif.gz_C | 2.9 a crystal structure of ligand-free tryptophanyl-trna synthetase: domain movements fragment the adenine nucleotide binding site. | 0.886 | 25 | 346 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 5ekdB01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9452 | 25 | 204 | 3.40.50.620 |
| 2g36A01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.929 | 25 | 346 | 3.40.50.620 |
| af_Q86A90_13_226_3.40.50.620 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9232 | 25 | 199 | 3.40.50.620 |
| 2g36A01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9207 | 25 | 346 | 3.40.50.620 |
| 1yi8B01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9147 | 26 | 346 | 3.40.50.620 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-R6HH48-F1-model_v4 | Tryptophan--tRNA ligase (EC 6.1.1.2) | 0.9744 | 2 | 346 |
GO:0004830
GO:0005524 GO:0005737 GO:0006436 |
| AF-C5C1Y1-F1-model_v4 | Tryptophan--tRNA ligase (EC 6.1.1.2) | 0.9693 | 3 | 346 |
GO:0004830
GO:0005524 GO:0005829 GO:0006436 |
| AF-A0A160VLG4-F1-model_v4 | deleted | 0.9678 | 51 | 346 |
|
| AF-A0A414JE85-F1-model_v4 | deleted | 0.9651 | 22 | 296 |
|
| AF-A0A1G6QUF3-F1-model_v4 | Tryptophan--tRNA ligase (EC 6.1.1.2) | 0.9633 | 11 | 346 |
GO:0004830
GO:0005524 GO:0005737 GO:0006436 |