F258772

General Info

Members Datasets Scaffolds Average Seq Length
171 124 342 296

Family's Representative Sequence

Representative Sequence 3300013296|Ga0157374_10121866|Ga0157374_101218661
Length 339
Sequence MSYVLCLTWLRGWLPMLNIRCENAERRTPNRHAPGVELSVPEVRIIEVGPRDGLQNEPIPISTELKLEFIRNLVDSGLGEIEVTSFVSPKWVPQLGDAAELWPQLPSGPKFSARVPNMKGLERAIELGVERIAIFTAASDAFTQKNINMTVEQSLEVFGEVVREFRSARPKGWGRGYVSTAFECPYAGRIAPETVTGVAERLLALKVDEISVGDTIGTAVPKEVDVLTKMLLGTVPLEKLVYHFHDTRGTAIANVAAALSLGVTSFDSSAAGLGGCPYAPGAGGNLATDDLVYFLERSGFSTGVNAQKLAAASLPILEALGRPVFAKAQLALGARCSPQ

Samples

Sample ID Description Type Environment
1 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
78 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
79 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
80 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
81 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
82 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
85 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
86 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
90 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
91 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
92 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
93 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
94 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
95 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
96 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
97 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
98 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
99 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
100 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
101 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
102 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
103 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
104 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
105 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
106 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
107 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
108 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
109 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
110 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
111 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
114 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
115 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
116 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
117 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
118 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
119 2744054900 Paraburkholderia ginsengiterrae DCY85-1 Isolate Unclassified
120 2744054901 Paraburkholderia ginsengiterrae DCY85 Isolate Unclassified
121 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
122 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
123 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
124 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.49
Metatranscriptomes 0
Isolates 3.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.58
Nodule 0
Rhizoplane 0
Rhizosphere 96.49
Stem 0
Stem Tuber 0
Unclassified 13.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157374_10121866 3300013296 Bacteria 2517
2 Ga0070658_10112478 3300005327 Bacteria 2257
3 Ga0070670_100041636 3300005331 Unclassified 3948
4 Ga0070666_10007630 3300005335 Bacteria 6676
5 Ga0070660_100004254 3300005339 Bacteria 9880
6 Ga0070689_100197152 3300005340 Bacteria 1642
7 Ga0070689_100258363 3300005340 Unclassified 1439
8 Ga0070669_100055873 3300005353 Bacteria 2893
9 Ga0070675_100000064 3300005354 Bacteria 62850
10 Ga0070671_100006683 3300005355 Bacteria 9222
11 Ga0070673_100008187 3300005364 Bacteria 6939
12 Ga0070688_100007483 3300005365 Bacteria 5891
13 Ga0070711_100037646 3300005439 Bacteria 3247
14 Ga0070705_100024431 3300005440 Bacteria 3261
15 Ga0070694_100042005 3300005444 Bacteria 3053
16 Ga0070662_100055001 3300005457 Unclassified 2886
17 Ga0070685_10049491 3300005466 Unclassified 2424
18 Ga0070706_100001248 3300005467 Bacteria 27231
19 Ga0070706_100078873 3300005467 Bacteria 3048
20 Ga0070707_100002969 3300005468 Bacteria 16095
21 Ga0070698_100107256 3300005471 Bacteria 2761
22 Ga0070699_100000322 3300005518 Bacteria 46347
23 Ga0070684_100432635 3300005535 Unclassified 1215
24 Ga0070697_100047750 3300005536 Bacteria 3471
25 Ga0070672_100007422 3300005543 Bacteria 7435
26 Ga0070672_100143254 3300005543 Unclassified 1973
27 Ga0070695_100012274 3300005545 Bacteria 5138
28 Ga0070696_100000279 3300005546 Bacteria 30713
29 Ga0070704_100026898 3300005549 Bacteria 3807
30 Ga0070664_100010752 3300005564 Bacteria 7420
31 Ga0068859_100032497 3300005617 Bacteria 5241
32 Ga0068861_100067747 3300005719 Unclassified 2756
33 Ga0068863_100001761 3300005841 Bacteria 21473
34 Ga0068858_100002868 3300005842 Bacteria 17333
35 Ga0068858_100006008 3300005842 Bacteria 11854
36 Ga0068860_100003721 3300005843 Bacteria 15683
37 Ga0068860_100375257 3300005843 Bacteria 1403
38 Ga0097621_100113214 3300006237 Bacteria 2295
39 Ga0068871_100009588 3300006358 Bacteria 7028
40 Ga0068871_100157740 3300006358 Bacteria 1939
41 Ga0075428_100054527 3300006844 Bacteria 4381
42 Ga0075428_100115604 3300006844 Bacteria 2923
43 Ga0075431_100074551 3300006847 Bacteria 3501
44 Ga0075431_100165823 3300006847 Bacteria 2271
45 Ga0075431_100190713 3300006847 Bacteria 2100
46 Ga0075431_100223453 3300006847 Unclassified 1921
47 Ga0075431_100451173 3300006847 Unclassified 1282
48 Ga0075433_10127966 3300006852 Bacteria 2256
49 Ga0075434_100041128 3300006871 Bacteria 4578
50 Ga0075434_100100489 3300006871 Bacteria 2898
51 Ga0075434_100291823 3300006871 Bacteria 1651
52 Ga0075434_100510753 3300006871 Unclassified 1222
53 Ga0075429_100023354 3300006880 Bacteria 5366
54 Ga0068865_100029678 3300006881 Bacteria 3631
55 Ga0068865_100056547 3300006881 Bacteria 2734
56 Ga0097620_100032497 3300006931 Bacteria 5241
57 Ga0075435_100216990 3300007076 Unclassified 1624
58 Ga0105240_10000958 3300009093 Bacteria 51520
59 Ga0111539_10004007 3300009094 Bacteria 19337
60 Ga0111539_10022706 3300009094 Bacteria 7706
61 Ga0111539_10065072 3300009094 Bacteria 4311
62 Ga0111539_10740320 3300009094 Bacteria 1144
63 Ga0114129_10000075 3300009147 Bacteria 91461
64 Ga0114129_10039122 3300009147 Bacteria 6687
65 Ga0114129_10190482 3300009147 Bacteria 2785
66 Ga0105242_10234776 3300009176 Bacteria 1645
67 Ga0105242_10386642 3300009176 Bacteria 1302
68 Ga0105248_10000363 3300009177 Bacteria 52947
69 Ga0157378_10664838 3300013297 Unclassified 1059
70 Ga0163162_10003664 3300013306 Bacteria 14740
71 Ga0157375_10002253 3300013308 Bacteria 16679
72 Ga0157375_10576626 3300013308 Unclassified 1285
73 Ga0157375_10819424 3300013308 Bacteria 1079
74 Ga0163163_10004984 3300014325 Bacteria 11434
75 Ga0163163_10005936 3300014325 Bacteria 10630
76 Ga0157379_10000421 3300014968 Bacteria 34236
77 Ga0157379_10021181 3300014968 Bacteria 5753
78 Ga0157376_10174728 3300014969 Bacteria 1959
79 Ga0207426_1002126 3300025302 Bacteria 13557
80 Ga0207653_10017922 3300025885 Bacteria 2231
81 Ga0207684_10000434 3300025910 Bacteria 55507
82 Ga0207695_10000697 3300025913 Bacteria 65760
83 Ga0207671_10000005 3300025914 Bacteria 844816
84 Ga0207663_10028387 3300025916 Bacteria 3275
85 Ga0207657_10008875 3300025919 Bacteria 10169
86 Ga0207646_10001354 3300025922 Bacteria 30412
87 Ga0207646_10262177 3300025922 Unclassified 1562
88 Ga0207681_10049592 3300025923 Bacteria 2838
89 Ga0207659_10045114 3300025926 Unclassified 3105
90 Ga0207644_10006542 3300025931 Bacteria 7594
91 Ga0207686_10170561 3300025934 Bacteria 1534
92 Ga0207670_10296439 3300025936 Bacteria 1265
93 Ga0207704_10008552 3300025938 Bacteria 4900
94 Ga0207704_10045940 3300025938 Bacteria 2598
95 Ga0207691_10002704 3300025940 Bacteria 17330
96 Ga0207691_10471304 3300025940 Unclassified 1067
97 Ga0207711_10000638 3300025941 Bacteria 35113
98 Ga0207689_10153393 3300025942 Bacteria 1899
99 Ga0207679_10006397 3300025945 Bacteria 7440
100 Ga0207679_10274242 3300025945 Bacteria 1444
101 Ga0207651_10056246 3300025960 Unclassified 2706
102 Ga0207658_10006886 3300025986 Bacteria 7739
103 Ga0207703_10016171 3300026035 Bacteria 5815
104 Ga0207641_10000514 3300026088 Bacteria 43419
105 Ga0207675_100115345 3300026118 Bacteria 2538
106 Ga0207428_10210639 3300027907 Bacteria 1460
107 Ga0207428_10228887 3300027907 Bacteria 1392
108 Ga0265338_10001638 3300028800 Bacteria 35812
109 Ga0265338_10034900 3300028800 Bacteria 4848
110 Ga0307412_10246820 3300031911 Bacteria 1384
111 Ga0307411_10306928 3300032005 Bacteria 1275
112 Ga0373943_0079965 3300035170 Bacteria 1674
113 Ga0373955_0024571 3300035172 Bacteria 3083
114 Ga0373931_0011785 3300035691 Bacteria 4227
115 Ga0373927_0004370 3300035695 Bacteria 9913
116 Ga0373927_0085429 3300035695 Bacteria 2048
117 Ga0373947_0019253 3300035725 Bacteria 3935
118 Ga0373925_0009011 3300037068 Bacteria 7266
119 Ga0373925_0118865 3300037068 Bacteria 2050
120 Ga0373925_0170537 3300037068 Bacteria 1718
121 Ga0395900_0133914 3300037418 Unclassified 2539
122 Ga0395905_0001996 3300037471 Bacteria 23316
123 Ga0395905_0018124 3300037471 Bacteria 6682
124 Ga0436360_0173072 3300039438 Bacteria 2064
125 Ga0436362_0812466 3300039453 Bacteria 2238
126 Ga0451577_0001627 3300042876 Bacteria 29137
127 Ga0453683_0013707 3300044673 Bacteria 5280
128 Ga0453683_0109753 3300044673 Bacteria 1734
129 Ga0453684_0387741 3300044712 Bacteria 1567
130 Ga0451576_0007616 3300045051 Bacteria 12891
131 Ga0495592_0207980 3300046454 Bacteria 1316
132 Ga0495603_0056916 3300046455 Bacteria 2314
133 Ga0495639_0003033 3300046475 Bacteria 7311
134 Ga0495664_0126252 3300046477 Bacteria 1548
135 Ga0495594_0005606 3300046499 Bacteria 6451
136 Ga0495618_0087824 3300046514 Bacteria 1989
137 Ga0495618_0163781 3300046514 Bacteria 1417
138 Ga0495628_0047777 3300046516 Bacteria 3393
139 Ga0495630_0003249 3300046517 Bacteria 11330
140 Ga0495630_0286265 3300046517 Bacteria 1259
141 Ga0495640_0297423 3300046533 Bacteria 1003
142 Ga0495586_0005977 3300046535 Bacteria 6511
143 Ga0495635_0008640 3300046663 Bacteria 7110
144 Ga0495613_0199099 3300046689 Bacteria 1413
145 Ga0495600_0047911 3300046809 Bacteria 2788
146 Ga0495660_0142474 3300046810 Bacteria 1191
147 Ga0495676_0023916 3300047321 Bacteria 5294
148 Ga0495680_0006391 3300047322 Bacteria 10962
149 Ga0495684_0174659 3300047471 Bacteria 1595
150 Ga0501047_0079012 3300049581 Bacteria 3164
151 nmdc:mga05p37_125989_c1 3300050507 Unclassified 3145
152 nmdc:mga05p37_15981_c1 3300050507 Bacteria 9031
153 nmdc:mga05p37_665353_c1 3300050507 Bacteria 1163
154 nmdc:mga06r32_151811_c1 3300050510 Bacteria 2295
155 nmdc:mga06r32_171523_c1 3300050510 Bacteria 2153
156 nmdc:mga06r32_214253_c1 3300050510 Unclassified 1914
157 nmdc:mga06r32_76872_c1 3300050510 Unclassified 3242
158 nmdc:mga08y16_104733_c1 3300050511 Bacteria 2945
159 nmdc:mga08y16_13232_c1 3300050511 Bacteria 8676
160 nmdc:mga0n895_116818_c1 3300050512 Bacteria 2687
161 nmdc:mga0n895_492028_c1 3300050512 Unclassified 1236
162 nmdc:mga0n895_71868_c1 3300050512 Bacteria 3431
163 nmdc:mga0n895_91408_c1 3300050512 Unclassified 3046
164 nmdc:mga0a205_28186_c2 3300050515 Bacteria 3486
165 Ga0495619_0102256 3300053085 Bacteria 1951
166 2746086280 2744054900 Bacteria 8399525
167 2746096967 2744054901 Bacteria 8397047
168 2936367264 2936361878 Bacteria 5632809
169 2977256725 2977254563 Bacteria 4828420
170 2990277599 2990275345 Bacteria 4887158
171 3001897916 3001892409 Bacteria 6328293
172 Ga0157374_10121866
173 Ga0070658_10112478
174 Ga0070670_100041636
175 Ga0070666_10007630
176 Ga0070660_100004254
177 Ga0070689_100197152
178 Ga0070689_100258363
179 Ga0070669_100055873
180 Ga0070675_100000064
181 Ga0070671_100006683
182 Ga0070673_100008187
183 Ga0070688_100007483
184 Ga0070711_100037646
185 Ga0070705_100024431
186 Ga0070694_100042005
187 Ga0070662_100055001
188 Ga0070685_10049491
189 Ga0070706_100001248
190 Ga0070706_100078873
191 Ga0070707_100002969
192 Ga0070698_100107256
193 Ga0070699_100000322
194 Ga0070684_100432635
195 Ga0070697_100047750
196 Ga0070672_100007422
197 Ga0070672_100143254
198 Ga0070695_100012274
199 Ga0070696_100000279
200 Ga0070704_100026898
201 Ga0070664_100010752
202 Ga0068859_100032497
203 Ga0068861_100067747
204 Ga0068863_100001761
205 Ga0068858_100002868
206 Ga0068858_100006008
207 Ga0068860_100003721
208 Ga0068860_100375257
209 Ga0097621_100113214
210 Ga0068871_100009588
211 Ga0068871_100157740
212 Ga0075428_100054527
213 Ga0075428_100115604
214 Ga0075431_100074551
215 Ga0075431_100165823
216 Ga0075431_100190713
217 Ga0075431_100223453
218 Ga0075431_100451173
219 Ga0075433_10127966
220 Ga0075434_100041128
221 Ga0075434_100100489
222 Ga0075434_100291823
223 Ga0075434_100510753
224 Ga0075429_100023354
225 Ga0068865_100029678
226 Ga0068865_100056547
227 Ga0097620_100032497
228 Ga0075435_100216990
229 Ga0105240_10000958
230 Ga0111539_10004007
231 Ga0111539_10022706
232 Ga0111539_10065072
233 Ga0111539_10740320
234 Ga0114129_10000075
235 Ga0114129_10039122
236 Ga0114129_10190482
237 Ga0105242_10234776
238 Ga0105242_10386642
239 Ga0105248_10000363
240 Ga0157378_10664838
241 Ga0163162_10003664
242 Ga0157375_10002253
243 Ga0157375_10576626
244 Ga0157375_10819424
245 Ga0163163_10004984
246 Ga0163163_10005936
247 Ga0157379_10000421
248 Ga0157379_10021181
249 Ga0157376_10174728
250 Ga0207426_1002126
251 Ga0207653_10017922
252 Ga0207684_10000434
253 Ga0207695_10000697
254 Ga0207671_10000005
255 Ga0207663_10028387
256 Ga0207657_10008875
257 Ga0207646_10001354
258 Ga0207646_10262177
259 Ga0207681_10049592
260 Ga0207659_10045114
261 Ga0207644_10006542
262 Ga0207686_10170561
263 Ga0207670_10296439
264 Ga0207704_10008552
265 Ga0207704_10045940
266 Ga0207691_10002704
267 Ga0207691_10471304
268 Ga0207711_10000638
269 Ga0207689_10153393
270 Ga0207679_10006397
271 Ga0207679_10274242
272 Ga0207651_10056246
273 Ga0207658_10006886
274 Ga0207703_10016171
275 Ga0207641_10000514
276 Ga0207675_100115345
277 Ga0207428_10210639
278 Ga0207428_10228887
279 Ga0265338_10001638
280 Ga0265338_10034900
281 Ga0307412_10246820
282 Ga0307411_10306928
283 Ga0373943_0079965
284 Ga0373955_0024571
285 Ga0373931_0011785
286 Ga0373927_0004370
287 Ga0373927_0085429
288 Ga0373947_0019253
289 Ga0373925_0009011
290 Ga0373925_0118865
291 Ga0373925_0170537
292 Ga0395900_0133914
293 Ga0395905_0001996
294 Ga0395905_0018124
295 Ga0436360_0173072
296 Ga0436362_0812466
297 Ga0451577_0001627
298 Ga0453683_0013707
299 Ga0453683_0109753
300 Ga0453684_0387741
301 Ga0451576_0007616
302 Ga0495592_0207980
303 Ga0495603_0056916
304 Ga0495639_0003033
305 Ga0495664_0126252
306 Ga0495594_0005606
307 Ga0495618_0087824
308 Ga0495618_0163781
309 Ga0495628_0047777
310 Ga0495630_0003249
311 Ga0495630_0286265
312 Ga0495640_0297423
313 Ga0495586_0005977
314 Ga0495635_0008640
315 Ga0495613_0199099
316 Ga0495600_0047911
317 Ga0495660_0142474
318 Ga0495676_0023916
319 Ga0495680_0006391
320 Ga0495684_0174659
321 Ga0501047_0079012
322 nmdc:mga05p37_125989_c1
323 nmdc:mga05p37_15981_c1
324 nmdc:mga05p37_665353_c1
325 nmdc:mga06r32_151811_c1
326 nmdc:mga06r32_171523_c1
327 nmdc:mga06r32_214253_c1
328 nmdc:mga06r32_76872_c1
329 nmdc:mga08y16_104733_c1
330 nmdc:mga08y16_13232_c1
331 nmdc:mga0n895_116818_c1
332 nmdc:mga0n895_492028_c1
333 nmdc:mga0n895_71868_c1
334 nmdc:mga0n895_91408_c1
335 nmdc:mga0a205_28186_c2
336 Ga0495619_0102256
337 2746086280
338 2746096967
339 2936367264
340 2977256725
341 2990277599
342 3001897916

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00682

HMGL-like

HMGL-like

42

316

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3mp5-assembly2.cif.gz_C crystal structure of human lyase r41m in complex with hmg-coa 0.9893 12 304
3mp3-assembly2.cif.gz_D crystal structure of human lyase in complex with inhibitor hg-coa 0.9884 12 304
3mp4-assembly3.cif.gz_F crystal structure of human lyase r41m mutant 0.9866 12 304
2cw6-assembly2.cif.gz_D crystal structure of human hmg-coa lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria 0.9862 12 304
3mp5-assembly2.cif.gz_D crystal structure of human lyase r41m in complex with hmg-coa 0.9857 12 304
ID Description Score Start End Superfamily
af_Q0JNR8_151_451_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9895 11 308 3.20.20.70
1ydoB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9779 12 306 3.20.20.70
af_Q0JNR8_151_451_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9765 11 308 3.20.20.70
1ydoB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.968 12 306 3.20.20.70
af_Q4DIQ4_8_322_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.925 13 294 3.20.20.70
ID Description Score Start End GO Terms
AF-H9FG75-F1-model_v4 hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) 0.9975 53 177 GO:0004419
GO:0046872
AF-A0A838ETV3-F1-model_v4 Hydroxymethylglutaryl-CoA lyase 0.9963 13 196 GO:0004419
GO:0006552
GO:0046872
GO:0046951
AF-A0A7C7UZ42-F1-model_v4 Hydroxymethylglutaryl-CoA lyase 0.9929 12 118 GO:0004419
GO:0006552
GO:0046872
GO:0046951
AF-A0A2P2LZ71-F1-model_v4 hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) 0.9926 10 308 GO:0004419
GO:0006552
GO:0046872
GO:0046951
AF-A0A067RP78-F1-model_v4 hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) 0.9925 11 305 GO:0004419
GO:0006552
GO:0046872
GO:0046951

Map