F258226

General Info

Members Datasets Scaffolds Average Seq Length
171 108 171 157

Family's Representative Sequence

Representative Sequence 3300005438|Ga0070701_10014726|Ga0070701_100147262
Length 192
Sequence MHAIGAVCATSETKRAGTLFDKAYRFSTISLPHGKTPMLRISKLTDYGLLATVYLSRKHGEVVSAREIAGFYHLPVPMITKVLKTLHQGGLIDSHRGVGGGYSFNGDAEEVTLGALLEVLEGPWDLVECESTDDKGHATCAIRIACPSRRFMFGINRAIKGAFEQVTLGDLTRGVMPLPVIGFGNIRESATS

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
30 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
54 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
55 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
82 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
85 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
86 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
87 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
88 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
89 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
90 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
91 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
96 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
97 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
98 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
101 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
108 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.17
Rhizosphere 91.23
Stem 0
Stem Tuber 0
Unclassified 7.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100000027 3300005329 Bacteria 172200
2 Ga0070683_100388510 3300005329 Bacteria 1330
3 Ga0070670_100000463 3300005331 Bacteria 32853
4 Ga0070670_100049533 3300005331 Bacteria 3612
5 Ga0068869_100005528 3300005334 Bacteria 7956
6 Ga0070682_100000021 3300005337 Bacteria 215101
7 Ga0070682_100056437 3300005337 Bacteria 2470
8 Ga0068868_100031712 3300005338 Bacteria 4062
9 Ga0068868_101555600 3300005338 Unclassified 620
10 Ga0070689_100743763 3300005340 Unclassified 859
11 Ga0070687_100005213 3300005343 Bacteria 5247
12 Ga0070692_10073744 3300005345 Bacteria 1824
13 Ga0070673_100015430 3300005364 Bacteria 5365
14 Ga0070673_100230651 3300005364 Bacteria 1606
15 Ga0070701_10014726 3300005438 Bacteria 3592
16 Ga0070705_100410225 3300005440 Bacteria 1005
17 Ga0070700_100000009 3300005441 Bacteria 181474
18 Ga0070700_100681559 3300005441 Bacteria 815
19 Ga0070708_100012705 3300005445 Bacteria 6877
20 Ga0070678_100270422 3300005456 Bacteria 1433
21 Ga0070706_100020257 3300005467 Bacteria 6130
22 Ga0070706_100143100 3300005467 Bacteria 2232
23 Ga0070706_100220925 3300005467 Bacteria 1768
24 Ga0070707_100035199 3300005468 Bacteria 4776
25 Ga0070707_100057776 3300005468 Bacteria 3722
26 Ga0070707_100137468 3300005468 Bacteria 2377
27 Ga0070707_100169743 3300005468 Bacteria 2126
28 Ga0070698_100077962 3300005471 Bacteria 3312
29 Ga0070698_100277305 3300005471 Bacteria 1608
30 Ga0070698_100413250 3300005471 Unclassified 1283
31 Ga0070698_100476340 3300005471 Bacteria 1185
32 Ga0070699_100082138 3300005518 Bacteria 2808
33 Ga0070699_100277909 3300005518 Bacteria 1500
34 Ga0070699_100587137 3300005518 Bacteria 1015
35 Ga0070684_100000051 3300005535 Bacteria 78284
36 Ga0070684_100321226 3300005535 Bacteria 1422
37 Ga0070697_100016229 3300005536 Bacteria 5856
38 Ga0068853_100034496 3300005539 Bacteria 4295
39 Ga0068853_100099913 3300005539 Bacteria 2564
40 Ga0068853_101073593 3300005539 Bacteria 776
41 Ga0070672_100555485 3300005543 Bacteria 997
42 Ga0068857_100390436 3300005577 Bacteria 1294
43 Ga0068854_100011071 3300005578 Bacteria 5854
44 Ga0068854_100208065 3300005578 Bacteria 1542
45 Ga0070702_100119760 3300005615 Bacteria 1646
46 Ga0070702_100196710 3300005615 Bacteria 1331
47 Ga0068864_100000001 3300005618 Bacteria 686767
48 Ga0068870_10075183 3300005840 Bacteria 1852
49 Ga0068858_100000467 3300005842 Bacteria 42180
50 Ga0070717_10365845 3300006028 Bacteria 1292
51 Ga0070716_100340396 3300006173 Bacteria 1058
52 Ga0075428_100002434 3300006844 Bacteria 20219
53 Ga0075428_100474508 3300006844 Bacteria 1339
54 Ga0075429_101207662 3300006880 Bacteria 660
55 Ga0068865_100135842 3300006881 Bacteria 1848
56 Ga0075436_100070597 3300006914 Bacteria 2415
57 Ga0075435_100000187 3300007076 Bacteria 37010
58 Ga0075435_100012383 3300007076 Bacteria 6312
59 Ga0111539_10000003 3300009094 Bacteria 880006
60 Ga0105245_10000598 3300009098 Bacteria 32661
61 Ga0105245_10069285 3300009098 Bacteria 3198
62 Ga0114129_10196189 3300009147 Bacteria 2737
63 Ga0114129_10567246 3300009147 Bacteria 1474
64 Ga0105242_10003591 3300009176 Bacteria 12063
65 Ga0105248_11597992 3300009177 Bacteria 739
66 Ga0105238_10000002 3300009551 Bacteria 772711
67 Ga0105239_10018217 3300010375 Bacteria 7763
68 Ga0105246_10290167 3300011119 Bacteria 1316
69 Ga0157369_10000589 3300013105 Bacteria 47375
70 Ga0157369_10650805 3300013105 Bacteria 1087
71 Ga0157374_10000016 3300013296 Bacteria 293656
72 Ga0157378_10000678 3300013297 Bacteria 31999
73 Ga0157378_10001262 3300013297 Bacteria 22775
74 Ga0163162_10039276 3300013306 Bacteria 4729
75 Ga0157372_10412304 3300013307 Bacteria 1574
76 Ga0157375_10000010 3300013308 Bacteria 361011
77 Ga0157375_10000077 3300013308 Bacteria 100528
78 Ga0157375_10000604 3300013308 Bacteria 31871
79 Ga0163163_10498669 3300014325 Bacteria 1279
80 Ga0157377_10000004 3300014745 Bacteria 430019
81 Ga0157376_10000003 3300014969 Bacteria 568634
82 Ga0157376_10685414 3300014969 Bacteria 1028
83 Ga0213873_10000001 3300021358 Bacteria 1657979
84 Ga0213873_10008428 3300021358 Bacteria 2105
85 Ga0213876_10000015 3300021384 Bacteria 304025
86 Ga0213876_10000203 3300021384 Bacteria 60770
87 Ga0213876_10002013 3300021384 Bacteria 12156
88 Ga0213876_10057588 3300021384 Bacteria 2052
89 Ga0207645_10061709 3300025907 Bacteria 2394
90 Ga0207643_10061730 3300025908 Bacteria 2141
91 Ga0207684_10028633 3300025910 Bacteria 4747
92 Ga0207684_10058632 3300025910 Bacteria 3267
93 Ga0207684_10382858 3300025910 Bacteria 1210
94 Ga0207660_10025653 3300025917 Bacteria 4004
95 Ga0207662_10007231 3300025918 Bacteria 6038
96 Ga0207646_10013886 3300025922 Bacteria 7680
97 Ga0207646_10041664 3300025922 Bacteria 4126
98 Ga0207646_10562233 3300025922 Bacteria 1025
99 Ga0207646_10835404 3300025922 Bacteria 819
100 Ga0207694_10000001 3300025924 Bacteria 4078485
101 Ga0207650_10000453 3300025925 Bacteria 34778
102 Ga0207650_10010599 3300025925 Bacteria 6330
103 Ga0207650_10665086 3300025925 Archaea 878
104 Ga0207650_10960711 3300025925 Bacteria 726
105 Ga0207659_10000006 3300025926 Bacteria 384976
106 Ga0207687_10000005 3300025927 Bacteria 770649
107 Ga0207687_10001541 3300025927 Bacteria 15813
108 Ga0207687_10710448 3300025927 Bacteria 853
109 Ga0207686_10032482 3300025934 Bacteria 3107
110 Ga0207670_10005164 3300025936 Bacteria 7135
111 Ga0207665_10275542 3300025939 Bacteria 1250
112 Ga0207711_10537229 3300025941 Bacteria 1090
113 Ga0207689_10006874 3300025942 Bacteria 10004
114 Ga0207689_10391815 3300025942 Bacteria 1157
115 Ga0207661_10000015 3300025944 Bacteria 318960
116 Ga0207661_10934285 3300025944 Bacteria 799
117 Ga0207679_11681963 3300025945 Bacteria 581
118 Ga0207651_10046279 3300025960 Bacteria 2924
119 Ga0207640_10039036 3300025981 Bacteria 3002
120 Ga0207640_10231063 3300025981 Bacteria 1423
121 Ga0207677_10000048 3300026023 Bacteria 101555
122 Ga0207703_10000085 3300026035 Bacteria 107333
123 Ga0207639_10000048 3300026041 Bacteria 124627
124 Ga0207639_10069336 3300026041 Bacteria 2751
125 Ga0207708_10000003 3300026075 Bacteria 324662
126 Ga0207676_10000002 3300026095 Bacteria 1198607
127 Ga0207675_100249674 3300026118 Bacteria 1717
128 Ga0207683_10309799 3300026121 Bacteria 1445
129 Ga0207428_10000001 3300027907 Bacteria 1034622
130 Ga0307511_10013051 3300030521 Bacteria 8128
131 Ga0307416_100780092 3300032002 Bacteria 1050
132 Ga0307415_101130882 3300032126 Bacteria 735
133 Ga0373932_0000514 3300035112 Bacteria 11910
134 Ga0373941_0425000 3300035115 Unclassified 553
135 Ga0373943_0127627 3300035170 Bacteria 1358
136 Ga0436364_1378622 3300037853 Bacteria 1513
137 Ga0436365_0142374 3300039437 Bacteria 217743
138 Ga0436365_0171704 3300039437 Bacteria 1541
139 Ga0436365_0820057 3300039437 Bacteria 16698
140 Ga0436365_1299359 3300039437 Bacteria 3736
141 Ga0436365_1476017 3300039437 Bacteria 2052
142 Ga0436365_1580021 3300039437 Bacteria 2404
143 Ga0436363_1593127 3300039450 Bacteria 1211
144 Ga0436362_0273161 3300039453 Bacteria 561309
145 Ga0436362_0617800 3300039453 Bacteria 1984
146 Ga0451577_0004827 3300042876 Bacteria 14079
147 Ga0451577_0242710 3300042876 Bacteria 1630
148 Ga0451577_0374509 3300042876 Bacteria 1292
149 Ga0453683_0148785 3300044673 Bacteria 1479
150 Ga0453684_0014493 3300044712 Bacteria 12598
151 Ga0453684_1028668 3300044712 Bacteria 874
152 Ga0466960_0115878 3300044901 Bacteria 1398
153 Ga0451576_0138325 3300045051 Bacteria 2540
154 Ga0495679_016693 3300047446 Bacteria 2650
155 Ga0496106_0137986 3300048909 Bacteria 1917
156 Ga0496112_0539508 3300048915 Bacteria 1101
157 Ga0501080_0731493 3300049742 Unclassified 871
158 Ga0501083_0973664 3300049744 Unclassified 552
159 nmdc:mga05p37_224425_c1 3300050507 Bacteria 2266
160 nmdc:mga05p37_430299_c1 3300050507 Bacteria 1533
161 nmdc:mga06r32_2354_c1 3300050510 Bacteria 16931
162 nmdc:mga06r32_770680_c1 3300050510 Bacteria 924
163 nmdc:mga08y16_1_c1 3300050511 Bacteria 1034622
164 nmdc:mga0n895_241810_c1 3300050512 Bacteria 1832
165 nmdc:mga0n895_842271_c1 3300050512 Unclassified 905
166 nmdc:mga0rr50_340_c1 3300050513 Bacteria 25379
167 nmdc:mga0rr50_50503_c1 3300050513 Bacteria 3082
168 nmdc:mga0rr50_75560_c1 3300050513 Bacteria 2583
169 nmdc:mga08x19_21533_c1 3300050514 Bacteria 3982
170 nmdc:mga08x19_604384_c1 3300050514 Bacteria 777
171 Ga0495655_0000287 3300053083 Bacteria 9217

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025942 Ga0207689_10391815 Ga0207689_103918152 148
2 3300013306 Ga0163162_10039276 Ga0163162_100392762 151
3 3300005337 Ga0070682_100000021 Ga0070682_100000021197 154
4 3300005364 Ga0070673_100230651 Ga0070673_1002306513 154
5 3300005615 Ga0070702_100119760 Ga0070702_1001197602 154
6 3300009098 Ga0105245_10069285 Ga0105245_100692852 154
7 3300010375 Ga0105239_10018217 Ga0105239_100182172 154
8 3300044901 Ga0466960_0115878 Ga0466960_0115878_437_904 154
9 3300005329 Ga0070683_100000027 Ga0070683_100000027128 155
10 3300005329 Ga0070683_100388510 Ga0070683_1003885102 155
11 3300005331 Ga0070670_100000463 Ga0070670_10000046326 155
12 3300005331 Ga0070670_100049533 Ga0070670_1000495333 155
13 3300005334 Ga0068869_100005528 Ga0068869_1000055282 155
14 3300005337 Ga0070682_100056437 Ga0070682_1000564372 155
15 3300005338 Ga0068868_100031712 Ga0068868_1000317122 155
16 3300005338 Ga0068868_101555600 Ga0068868_1015556001 155
17 3300005340 Ga0070689_100743763 Ga0070689_1007437632 155
18 3300005343 Ga0070687_100005213 Ga0070687_1000052132 155
19 3300005345 Ga0070692_10073744 Ga0070692_100737443 155
20 3300005364 Ga0070673_100015430 Ga0070673_1000154303 155
21 3300005438 Ga0070701_10014726 Ga0070701_100147262 155
22 3300005440 Ga0070705_100410225 Ga0070705_1004102252 155
23 3300005441 Ga0070700_100000009 Ga0070700_10000000979 155
24 3300005441 Ga0070700_100681559 Ga0070700_1006815591 155
25 3300005445 Ga0070708_100012705 Ga0070708_1000127053 155
26 3300005456 Ga0070678_100270422 Ga0070678_1002704222 155
27 3300005467 Ga0070706_100020257 Ga0070706_1000202574 155
28 3300005467 Ga0070706_100143100 Ga0070706_1001431002 155
29 3300005467 Ga0070706_100220925 Ga0070706_1002209252 155
30 3300005468 Ga0070707_100035199 Ga0070707_1000351994 155
31 3300005468 Ga0070707_100057776 Ga0070707_1000577764 155
32 3300005468 Ga0070707_100137468 Ga0070707_1001374683 155
33 3300005468 Ga0070707_100169743 Ga0070707_1001697432 155
34 3300005471 Ga0070698_100077962 Ga0070698_1000779623 155
35 3300005471 Ga0070698_100277305 Ga0070698_1002773052 155
36 3300005471 Ga0070698_100413250 Ga0070698_1004132503 155
37 3300005471 Ga0070698_100476340 Ga0070698_1004763401 155
38 3300005518 Ga0070699_100082138 Ga0070699_1000821382 155
39 3300005518 Ga0070699_100277909 Ga0070699_1002779092 155
40 3300005518 Ga0070699_100587137 Ga0070699_1005871372 155
41 3300005535 Ga0070684_100000051 Ga0070684_10000005159 155
42 3300005535 Ga0070684_100321226 Ga0070684_1003212262 155
43 3300005536 Ga0070697_100016229 Ga0070697_1000162294 155
44 3300005539 Ga0068853_100034496 Ga0068853_1000344966 155
45 3300005539 Ga0068853_100099913 Ga0068853_1000999133 155
46 3300005539 Ga0068853_101073593 Ga0068853_1010735932 155
47 3300005543 Ga0070672_100555485 Ga0070672_1005554851 155
48 3300005577 Ga0068857_100390436 Ga0068857_1003904361 155
49 3300005578 Ga0068854_100011071 Ga0068854_1000110715 155
50 3300005578 Ga0068854_100208065 Ga0068854_1002080652 155
51 3300005615 Ga0070702_100196710 Ga0070702_1001967102 155
52 3300005618 Ga0068864_100000001 Ga0068864_100000001224 155
53 3300005840 Ga0068870_10075183 Ga0068870_100751832 155
54 3300005842 Ga0068858_100000467 Ga0068858_10000046734 155
55 3300006028 Ga0070717_10365845 Ga0070717_103658451 155
56 3300006173 Ga0070716_100340396 Ga0070716_1003403962 155
57 3300006844 Ga0075428_100002434 Ga0075428_10000243422 155
58 3300006844 Ga0075428_100474508 Ga0075428_1004745082 155
59 3300006880 Ga0075429_101207662 Ga0075429_1012076622 155
60 3300006881 Ga0068865_100135842 Ga0068865_1001358422 155
61 3300006914 Ga0075436_100070597 Ga0075436_1000705972 155
62 3300007076 Ga0075435_100000187 Ga0075435_10000018724 155
63 3300007076 Ga0075435_100012383 Ga0075435_1000123833 155
64 3300009094 Ga0111539_10000003 Ga0111539_10000003395 155
65 3300009098 Ga0105245_10000598 Ga0105245_1000059815 155
66 3300009147 Ga0114129_10196189 Ga0114129_101961892 155
67 3300009147 Ga0114129_10567246 Ga0114129_105672462 155
68 3300009176 Ga0105242_10003591 Ga0105242_1000359113 155
69 3300009177 Ga0105248_11597992 Ga0105248_115979921 155
70 3300009551 Ga0105238_10000002 Ga0105238_10000002177 155
71 3300011119 Ga0105246_10290167 Ga0105246_102901672 155
72 3300013105 Ga0157369_10000589 Ga0157369_1000058937 155
73 3300013105 Ga0157369_10650805 Ga0157369_106508052 155
74 3300013296 Ga0157374_10000016 Ga0157374_10000016289 155
75 3300013297 Ga0157378_10000678 Ga0157378_1000067819 155
76 3300013297 Ga0157378_10001262 Ga0157378_100012627 155
77 3300013307 Ga0157372_10412304 Ga0157372_104123042 155
78 3300013308 Ga0157375_10000010 Ga0157375_1000001079 155
79 3300013308 Ga0157375_10000077 Ga0157375_1000007769 155
80 3300013308 Ga0157375_10000604 Ga0157375_1000060421 155
81 3300014325 Ga0163163_10498669 Ga0163163_104986692 155
82 3300014745 Ga0157377_10000004 Ga0157377_10000004246 155
83 3300014969 Ga0157376_10000003 Ga0157376_1000000324 155
84 3300014969 Ga0157376_10685414 Ga0157376_106854142 155
85 3300021358 Ga0213873_10000001 Ga0213873_10000001326 155
86 3300021358 Ga0213873_10008428 Ga0213873_100084282 155
87 3300021384 Ga0213876_10000015 Ga0213876_10000015134 155
88 3300021384 Ga0213876_10000203 Ga0213876_1000020347 155
89 3300021384 Ga0213876_10002013 Ga0213876_1000201314 155
90 3300021384 Ga0213876_10057588 Ga0213876_100575882 155
91 3300025907 Ga0207645_10061709 Ga0207645_100617092 155
92 3300025908 Ga0207643_10061730 Ga0207643_100617302 155
93 3300025910 Ga0207684_10028633 Ga0207684_100286334 155
94 3300025910 Ga0207684_10058632 Ga0207684_100586324 155
95 3300025910 Ga0207684_10382858 Ga0207684_103828582 155
96 3300025917 Ga0207660_10025653 Ga0207660_100256532 155
97 3300025918 Ga0207662_10007231 Ga0207662_100072315 155
98 3300025922 Ga0207646_10013886 Ga0207646_100138862 155
99 3300025922 Ga0207646_10041664 Ga0207646_100416643 155
100 3300025922 Ga0207646_10562233 Ga0207646_105622331 155
101 3300025922 Ga0207646_10835404 Ga0207646_108354042 155
102 3300025924 Ga0207694_10000001 Ga0207694_10000001178 155
103 3300025925 Ga0207650_10000453 Ga0207650_100004533 155
104 3300025925 Ga0207650_10010599 Ga0207650_100105993 155
105 3300025925 Ga0207650_10665086 Ga0207650_106650862 155
106 3300025925 Ga0207650_10960711 Ga0207650_109607112 155
107 3300025926 Ga0207659_10000006 Ga0207659_10000006255 155
108 3300025927 Ga0207687_10000005 Ga0207687_10000005559 155
109 3300025927 Ga0207687_10001541 Ga0207687_1000154115 155
110 3300025927 Ga0207687_10710448 Ga0207687_107104482 155
111 3300025934 Ga0207686_10032482 Ga0207686_100324823 155
112 3300025936 Ga0207670_10005164 Ga0207670_100051646 155
113 3300025939 Ga0207665_10275542 Ga0207665_102755422 155
114 3300025941 Ga0207711_10537229 Ga0207711_105372292 155
115 3300025942 Ga0207689_10006874 Ga0207689_100068742 155
116 3300025944 Ga0207661_10000015 Ga0207661_1000001556 155
117 3300025944 Ga0207661_10934285 Ga0207661_109342852 155
118 3300025945 Ga0207679_11681963 Ga0207679_116819632 155
119 3300025960 Ga0207651_10046279 Ga0207651_100462794 155
120 3300025981 Ga0207640_10039036 Ga0207640_100390362 155
121 3300025981 Ga0207640_10231063 Ga0207640_102310632 155
122 3300026023 Ga0207677_10000048 Ga0207677_100000482 155
123 3300026035 Ga0207703_10000085 Ga0207703_1000008557 155
124 3300026041 Ga0207639_10000048 Ga0207639_1000004886 155
125 3300026041 Ga0207639_10069336 Ga0207639_100693363 155
126 3300026075 Ga0207708_10000003 Ga0207708_1000000379 155
127 3300026095 Ga0207676_10000002 Ga0207676_10000002610 155
128 3300026118 Ga0207675_100249674 Ga0207675_1002496742 155
129 3300026121 Ga0207683_10309799 Ga0207683_103097992 155
130 3300027907 Ga0207428_10000001 Ga0207428_10000001544 155
131 3300030521 Ga0307511_10013051 Ga0307511_100130515 155
132 3300032002 Ga0307416_100780092 Ga0307416_1007800921 155
133 3300032126 Ga0307415_101130882 Ga0307415_1011308821 155
134 3300035112 Ga0373932_0000514 Ga0373932_0000514_1905_2372 155
135 3300035115 Ga0373941_0425000 Ga0373941_0425000_32_499 155
136 3300035170 Ga0373943_0127627 Ga0373943_0127627_651_1124 155
137 3300037853 Ga0436364_1378622 Ga0436364_1378622_801_1283 155
138 3300039437 Ga0436365_0142374 Ga0436365_0142374_5396_5869 155
139 3300039437 Ga0436365_0171704 Ga0436365_0171704_1040_1510 155
140 3300039437 Ga0436365_0820057 Ga0436365_0820057_2652_3119 155
141 3300039437 Ga0436365_1299359 Ga0436365_1299359_2934_3410 155
142 3300039437 Ga0436365_1476017 Ga0436365_1476017_397_867 155
143 3300039437 Ga0436365_1580021 Ga0436365_1580021_1887_2354 155
144 3300039450 Ga0436363_1593127 Ga0436363_1593127_182_652 155
145 3300039453 Ga0436362_0273161 Ga0436362_0273161_468463_468936 155
146 3300039453 Ga0436362_0617800 Ga0436362_0617800_287_754 155
147 3300042876 Ga0451577_0004827 Ga0451577_0004827_9027_9497 155
148 3300042876 Ga0451577_0242710 Ga0451577_0242710_598_1080 155
149 3300042876 Ga0451577_0374509 Ga0451577_0374509_669_1139 155
150 3300044673 Ga0453683_0148785 Ga0453683_0148785_10_480 155
151 3300044712 Ga0453684_0014493 Ga0453684_0014493_7073_7543 155
152 3300044712 Ga0453684_1028668 Ga0453684_1028668_69_551 155
153 3300045051 Ga0451576_0138325 Ga0451576_0138325_1098_1568 155
154 3300047446 Ga0495679_016693 Ga0495679_016693_738_1211 155
155 3300048909 Ga0496106_0137986 Ga0496106_0137986_696_1223 155
156 3300048915 Ga0496112_0539508 Ga0496112_0539508_534_1004 155
157 3300049742 Ga0501080_0731493 Ga0501080_0731493_48_518 155
158 3300049744 Ga0501083_0973664 Ga0501083_0973664_24_494 155
159 3300050507 nmdc:mga05p37_224425_c1 nmdc:mga05p37_224425_c1_214_681 155
160 3300050507 nmdc:mga05p37_430299_c1 nmdc:mga05p37_430299_c1_590_1060 155
161 3300050510 nmdc:mga06r32_2354_c1 nmdc:mga06r32_2354_c1_16124_16594 155
162 3300050510 nmdc:mga06r32_770680_c1 nmdc:mga06r32_770680_c1_268_738 155
163 3300050511 nmdc:mga08y16_1_c1 nmdc:mga08y16_1_c1_436549_437019 155
164 3300050512 nmdc:mga0n895_241810_c1 nmdc:mga0n895_241810_c1_545_1015 155
165 3300050512 nmdc:mga0n895_842271_c1 nmdc:mga0n895_842271_c1_365_889 155
166 3300050513 nmdc:mga0rr50_340_c1 nmdc:mga0rr50_340_c1_1032_1502 155
167 3300050513 nmdc:mga0rr50_50503_c1 nmdc:mga0rr50_50503_c1_1203_1727 155
168 3300050513 nmdc:mga0rr50_75560_c1 nmdc:mga0rr50_75560_c1_1013_1537 155
169 3300050514 nmdc:mga08x19_21533_c1 nmdc:mga08x19_21533_c1_496_966 155
170 3300050514 nmdc:mga08x19_604384_c1 nmdc:mga08x19_604384_c1_161_628 155
171 3300053083 Ga0495655_0000287 Ga0495655_0000287_6391_6864 155

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02082

Rrf2

Iron-dependent Transcriptional regulator

41

174

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
3f22-assembly1.cif.gz_B crystal structure of zalpha in complex with d(cgtacg) 0.939 9 67
3f22-assembly2.cif.gz_C crystal structure of zalpha in complex with d(cgtacg) 0.9238 5 69
5zuo-assembly1.cif.gz_A crystal structure of bz junction in diverse sequence 0.9069 26 69
2acj-assembly1.cif.gz_D crystal structure of the b/z junction containing dna bound to z-dna binding proteins 0.904 9 69
3f22-assembly2.cif.gz_C crystal structure of zalpha in complex with d(cgtacg) 0.898 5 69
ID Description Score Start End Superfamily
3f22A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9273 5 67 1.10.10.10
3nrvB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9128 10 67 1.10.10.10
5zuoA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9069 26 69 1.10.10.10
af_P55265_129_209_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9051 7 70 1.10.10.10
2gxbB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8972 17 70 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2V8PDW9-F1-model_v4 Transcriptional regulator 0.8656 3 136 GO:0003700
GO:0005829
AF-A0A3D2BR13-F1-model_v4 SUF system Fe-S cluster assembly regulator 0.8628 3 139 GO:0003700
GO:0005829
AF-A0A2H0TPM7-F1-model_v4 Rrf2 family transcriptional regulator 0.8622 3 135 GO:0003700
GO:0005829
AF-A0A1V5YW79-F1-model_v4 HTH-type transcriptional regulator CymR 0.8619 3 137 GO:0003700
GO:0005829
AF-A0A3F2V611-F1-model_v4 SUF system Fe-S cluster assembly regulator 0.8602 3 136 GO:0003700
GO:0005829

Feature Viewer

pLDDT pTM Quality
83.11 0.74 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map