F257752

General Info

Members Datasets Scaffolds Average Seq Length
170 126 156 670

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2818991444|2819586220
Length 702
Sequence RLFYFLTFKTIYNQTMQDTSKEFQPFVPAEANVKEFTIKAIIMGCLFGIIFGAANVYLALKAGLTVSASIPIAVIAITLGRRLLKTTILENNIIQTAGSAGESIASGVVFTLPGFLFLTEPASASYFNYMTILTLAIFGGILGTLMMIPLRRSLIVKEHGNLPYPEGTACASVLKAGEKGGNVAQTAFYGLGFAFVYAMLQKVFRVISELPSFATAQANRFFPSARLSSEITPEYLGVGYIIGLRISGLLVAGGVLSWFVFIPLLASVVPADVIAAQLVKLGYLSDLTAAGGPGDWNPATHTFGDWSDAIYRAYVRQIGAGAVAAGGFITLFKTLPTIVSSFKGSLGAIKTDKTNKADIRRTERDLDVRIVGVGSLVLVALMTVLPQIPGDSIISKLVIGVLVVIFGAFFVTVSSRIVGLIGSSNNPISGMTIATIMGTCLVFIAVGWTGKIYEPLALVVGGMICIAAANAGATSQDLKTGYIVGATPKYQQIALFAGAIVSSLAIGATVKILDTPSQALLAKGIHHAIGSDAYPAPQGTLMATLVKGILSFNLDWQFVLAGAAIAVVMELCGIQALSFAVGVYLPLSTTLPIFAGGAVRGIVDWNRKRKGEAVAAEAGEEDLGKGNLFATGLVAGGAIAGVLVAFASANENVSNFLAKLSAESGLTRLFGETGYMLLGAAFFVAMAVVLYRIAIKKEDPMI

Samples

Sample ID Description Type Environment
1 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
2 2818991444 Filimonas endophytica 3197 Isolate Unclassified
3 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
4 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
5 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
6 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
7 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
8 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
9 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
10 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
11 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
12 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
13 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
14 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
15 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
16 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
17 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
18 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
19 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
20 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
21 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
22 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
23 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
24 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
25 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
26 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
27 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
28 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
29 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
30 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
31 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
32 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
33 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
34 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
35 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
36 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
37 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
38 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
39 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
40 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
41 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
42 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
43 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
44 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
45 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
55 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
56 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
62 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
81 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
82 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
83 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
86 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
87 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
88 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
89 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
100 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
101 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
102 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
103 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
104 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
107 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
108 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
111 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
112 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
113 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
114 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
115 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
116 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
119 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
120 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
121 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
122 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
123 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.76
Metatranscriptomes 0
Isolates 8.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.71
Nodule 0
Rhizoplane 0
Rhizosphere 60
Stem 0
Stem Tuber 0
Unclassified 15.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10003791 3300001979 Bacteria 6580
2 JGI24739J22299_10007464 3300001989 Bacteria 4101
3 JGI24751J29686_10000381 3300002459 Bacteria 14912
4 JGI25154J39366_1000002 3300002738 Bacteria 466942
5 JGI25153J46596_10000187 3300003215 Bacteria 60030
6 rootH1_10047522 3300003316 Bacteria 3062
7 rootH2_10021057 3300003320 Bacteria 19112
8 rootL2_10056995 3300003322 Bacteria 7382
9 rootL2_10062473 3300003322 Bacteria 2967
10 rootH1_10011198 3300003323 Bacteria 5427
11 rootH1_10025022 3300003323 Bacteria 5671
12 JGI25160J50197_1002116 3300003354 Bacteria 9442
13 JGI25160J50197_1004078 3300003354 Bacteria 6359
14 Ga0055535_1001641 3300003761 Bacteria 10446
15 Ga0055528_1000422 3300003790 Bacteria 34012
16 Ga0055530_10000475 3300003791 Bacteria 34908
17 Ga0055531_10000014 3300003794 Bacteria 184532
18 Ga0055531_10000438 3300003794 Bacteria 39137
19 Ga0065165_1000258 3300005262 Bacteria 91861
20 Ga0065704_10074725 3300005289 Bacteria 6055
21 Ga0070683_100007163 3300005329 Bacteria 9405
22 Ga0068869_100018054 3300005334 Bacteria 4795
23 Ga0070682_100000019 3300005337 Bacteria 220844
24 Ga0070669_100008105 3300005353 Bacteria 7506
25 Ga0070688_100016358 3300005365 Bacteria 4240
26 Ga0070659_100001789 3300005366 Bacteria 15467
27 Ga0070662_100010599 3300005457 Bacteria 6058
28 Ga0068867_100077813 3300005459 Bacteria 2493
29 Ga0068853_100024724 3300005539 Bacteria 5038
30 Ga0070664_100013889 3300005564 Bacteria 6567
31 Ga0068852_100000417 3300005616 Bacteria 28355
32 Ga0068859_100000272 3300005617 Bacteria 51348
33 Ga0068859_100003439 3300005617 Bacteria 16091
34 Ga0068864_100005772 3300005618 Bacteria 10160
35 Ga0068861_100054657 3300005719 Bacteria 3042
36 Ga0075366_10006283 3300006195 Bacteria 6498
37 Ga0097621_100016949 3300006237 Bacteria 5522
38 Ga0097620_100000272 3300006931 Bacteria 51348
39 Ga0097620_100003439 3300006931 Bacteria 16091
40 Ga0105247_10002720 3300009101 Bacteria 11852
41 Ga0105242_10065612 3300009176 Bacteria 2995
42 Ga0105242_10080809 3300009176 Unclassified 2717
43 Ga0105249_10001920 3300009553 Bacteria 18039
44 Ga0105249_10003915 3300009553 Bacteria 12858
45 Ga0105249_10038125 3300009553 Unclassified 4360
46 Ga0157370_10017897 3300013104 Bacteria 7137
47 Ga0157369_10050474 3300013105 Bacteria 4505
48 Ga0163163_10041735 3300014325 Bacteria 4488
49 Ga0209258_100029 3300025242 Bacteria 490648
50 Ga0209646_1000005 3300025246 Bacteria 717627
51 Ga0209026_1000169 3300025250 Bacteria 100088
52 Ga0209148_1000089 3300025254 Bacteria 253548
53 Ga0209673_1000049 3300025273 Bacteria 286207
54 Ga0209130_1000976 3300025284 Bacteria 22454
55 Ga0209758_1000346 3300025297 Bacteria 84821
56 Ga0209758_1008745 3300025297 Bacteria 6465
57 Ga0209050_1000272 3300025298 Bacteria 110636
58 Ga0209050_1014782 3300025298 Bacteria 3333
59 Ga0207426_1000104 3300025302 Bacteria 249464
60 Ga0207426_1000233 3300025302 Bacteria 127848
61 Ga0207426_1000381 3300025302 Bacteria 76038
62 Ga0207426_1001311 3300025302 Bacteria 21230
63 Ga0207426_1007103 3300025302 Bacteria 4735
64 Ga0207426_1010278 3300025302 Bacteria 3641
65 Ga0209257_1000004 3300025304 Bacteria 1678347
66 Ga0209257_1000005 3300025304 Bacteria 1592528
67 Ga0209257_1003403 3300025304 Bacteria 13702
68 Ga0207682_10002162 3300025893 Bacteria 8897
69 Ga0207710_10001091 3300025900 Bacteria 13952
70 Ga0207647_10003135 3300025904 Bacteria 12418
71 Ga0207650_10011976 3300025925 Bacteria 5979
72 Ga0207659_10046384 3300025926 Bacteria 3068
73 Ga0207690_10009402 3300025932 Bacteria 5806
74 Ga0207669_10003828 3300025937 Bacteria 6556
75 Ga0207691_10007498 3300025940 Bacteria 10499
76 Ga0207689_10002854 3300025942 Bacteria 15942
77 Ga0207689_10086441 3300025942 Bacteria 2577
78 Ga0207679_10053947 3300025945 Bacteria 2957
79 Ga0207712_10000864 3300025961 Bacteria 22096
80 Ga0207712_10019578 3300025961 Unclassified 4423
81 Ga0207676_10085622 3300026095 Unclassified 2573
82 Ga0207674_10025201 3300026116 Bacteria 6346
83 Ga0207675_100010424 3300026118 Bacteria 8704
84 Ga0207683_10103902 3300026121 Unclassified 2538
85 Ga0207698_10004850 3300026142 Bacteria 8241
86 Ga0268264_10014264 3300028381 Bacteria 6532
87 Ga0307515_10000001 3300028794 Bacteria 4259510
88 Ga0307515_10000016 3300028794 Bacteria 554870
89 Ga0265327_10000013 3300031251 Bacteria 519549
90 Ga0436365_1122703 3300039437 Bacteria 4045
91 Ga0436365_1520014 3300039437 Bacteria 3841
92 Ga0436365_1684945 3300039437 Bacteria 47686
93 Ga0466972_0000051 3300044658 Bacteria 114011
94 Ga0453684_0070413 3300044712 Bacteria 4429
95 Ga0453684_0078610 3300044712 Bacteria 4127
96 Ga0495627_002511 3300046453 Bacteria 8752
97 Ga0495638_0000036 3300046460 Bacteria 275731
98 Ga0495633_0000025 3300046558 Bacteria 218627
99 Ga0496121_0000008 3300048924 Bacteria 843593
100 Ga0501031_0001662 3300049568 Bacteria 13960
101 Ga0501032_0000735 3300049569 Bacteria 26625
102 Ga0501032_0001336 3300049569 Bacteria 19664
103 Ga0501034_0000004 3300049571 Bacteria 382255
104 Ga0501034_0005058 3300049571 Bacteria 14487
105 Ga0501034_0010961 3300049571 Bacteria 9415
106 Ga0501034_0018023 3300049571 Bacteria 7244
107 Ga0501034_0082020 3300049571 Bacteria 3227
108 Ga0501036_0002739 3300049572 Bacteria 13935
109 Ga0501036_0014920 3300049572 Bacteria 6481
110 Ga0501036_0020151 3300049572 Bacteria 5600
111 Ga0501036_0064094 3300049572 Bacteria 3111
112 Ga0501037_0001415 3300049573 Bacteria 17601
113 Ga0501037_0032394 3300049573 Bacteria 3859
114 Ga0501038_0001686 3300049574 Bacteria 20477
115 Ga0501038_0019921 3300049574 Bacteria 6038
116 Ga0501043_0003796 3300049579 Bacteria 12422
117 Ga0501043_0005005 3300049579 Bacteria 10725
118 Ga0501043_0014779 3300049579 Bacteria 6113
119 Ga0501043_0034001 3300049579 Bacteria 4010
120 Ga0501046_0009951 3300049580 Bacteria 8191
121 Ga0501047_0002818 3300049581 Bacteria 16500
122 Ga0501048_0005121 3300049582 Bacteria 9988
123 Ga0501070_0010634 3300049586 Bacteria 7777
124 Ga0501073_0000302 3300049589 Bacteria 32545
125 Ga0501074_0003934 3300049590 Bacteria 10588
126 Ga0501077_0037068 3300049593 Unclassified 3107
127 Ga0501207_001960 3300049654 Unclassified 2629
128 Ga0501219_000030 3300049703 Bacteria 22707
129 Ga0501080_0021078 3300049742 Bacteria 6032
130 Ga0501083_0000211 3300049744 Bacteria 37931
131 Ga0501241_000494 3300049758 Bacteria 8503
132 Ga0501035_0005274 3300049822 Bacteria 12234
133 Ga0501044_0001926 3300049823 Bacteria 24024
134 Ga0501044_0002128 3300049823 Bacteria 22711
135 Ga0501044_0002402 3300049823 Bacteria 21355
136 Ga0501044_0098684 3300049823 Bacteria 2940
137 Ga0501045_0015634 3300049824 Bacteria 5384
138 Ga0501284_00051 3300050005 Bacteria 43498
139 nmdc:mga0k408_10647_c1 3300050493 Unclassified 4979
140 nmdc:mga08y16_191559_c1 3300050511 Bacteria 2121
141 Ga0500644_0000039 3300053088 Bacteria 78834
142 Ga0500644_0008081 3300053088 Bacteria 2766
143 Ga0500562_000027 3300053108 Bacteria 100118
144 Ga0500559_0010964 3300053136 Bacteria 3882
145 Ga0500568_0002431 3300053139 Bacteria 10963
146 Ga0500577_0001218 3300053142 Bacteria 6586
147 Ga0500604_0009443 3300053151 Bacteria 2599
148 Ga0500616_0000004 3300053153 Bacteria 1002714
149 Ga0500622_0000014 3300053156 Bacteria 368189
150 Ga0500622_0000020 3300053156 Bacteria 271239
151 Ga0500622_0000151 3300053156 Bacteria 73392
152 Ga0500622_0001381 3300053156 Bacteria 19563
153 Ga0500636_0007878 3300053177 Bacteria 6161
154 Ga0500645_002866 3300053730 Bacteria 7390
155 Ga0501084_0047046 3300054114 Bacteria 3613
156 Ga0501082_0069064 3300060353 Unclassified 3042

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053151 Ga0500604_0009443 Ga0500604_0009443_940_2589 540
2 3300005337 Ga0070682_100000019 Ga0070682_100000019193 611
3 3300049579 Ga0501043_0014779 Ga0501043_0014779_1831_3873 611
4 3300049569 Ga0501032_0001336 Ga0501032_0001336_134_2176 612
5 3300049571 Ga0501034_0005058 Ga0501034_0005058_4572_6614 612
6 3300049572 Ga0501036_0020151 Ga0501036_0020151_1606_3648 612
7 3300049573 Ga0501037_0001415 Ga0501037_0001415_3719_5761 612
8 3300049579 Ga0501043_0034001 Ga0501043_0034001_1856_3898 612
9 3300049823 Ga0501044_0001926 Ga0501044_0001926_6415_8457 612
10 3300049572 Ga0501036_0064094 Ga0501036_0064094_13_2055 633
11 3300014325 Ga0163163_10041735 Ga0163163_100417353 636
12 3300025925 Ga0207650_10011976 Ga0207650_100119764 636
13 3300005329 Ga0070683_100007163 Ga0070683_10000716311 637
14 3300005564 Ga0070664_100013889 Ga0070664_1000138892 637
15 3300025945 Ga0207679_10053947 Ga0207679_100539472 637
16 3300013104 Ga0157370_10017897 Ga0157370_100178973 640
17 3300049571 Ga0501034_0000004 Ga0501034_0000004_345451_347490 640
18 3300005366 Ga0070659_100001789 Ga0070659_1000017892 645
19 3300005616 Ga0068852_100000417 Ga0068852_10000041717 645
20 3300013105 Ga0157369_10050474 Ga0157369_100504742 645
21 3300025904 Ga0207647_10003135 Ga0207647_100031352 645
22 3300025932 Ga0207690_10009402 Ga0207690_100094023 645
23 3300026142 Ga0207698_10004850 Ga0207698_100048502 645
24 3300049703 Ga0501219_000030 Ga0501219_000030_4241_6286 647
25 3300049758 Ga0501241_000494 Ga0501241_000494_5477_7522 647
26 3300050005 Ga0501284_00051 Ga0501284_00051_28_2073 647
27 3300049571 Ga0501034_0018023 Ga0501034_0018023_2296_4353 648
28 3300005617 Ga0068859_100000272 Ga0068859_10000027212 649
29 3300006931 Ga0097620_100000272 Ga0097620_10000027212 649
30 3300005719 Ga0068861_100054657 Ga0068861_1000546572 651
31 3300025942 Ga0207689_10002854 Ga0207689_100028543 651
32 3300049823 Ga0501044_0098684 Ga0501044_0098684_75_2132 652
33 3300031251 Ga0265327_10000013 Ga0265327_10000013163 653
34 3300053730 Ga0500645_002866 Ga0500645_002866_339_2393 654
35 3300009101 Ga0105247_10002720 Ga0105247_100027202 655
36 3300025900 Ga0207710_10001091 Ga0207710_100010915 655
37 3300053088 Ga0500644_0008081 Ga0500644_0008081_293_2347 655
38 3300053108 Ga0500562_000027 Ga0500562_000027_81753_83867 655
39 3300028794 Ga0307515_10000001 Ga0307515_100000012256 656
40 3300003322 rootL2_10056995 rootL2_100569953 657
41 3300003323 rootH1_10025022 rootH1_100250223 657
42 3300025937 Ga0207669_10003828 Ga0207669_100038283 657
43 3300003761 Ga0055535_1001641 Ga0055535_10016416 658
44 3300025242 Ga0209258_100029 Ga0209258_100029118 658
45 3300025254 Ga0209148_1000089 Ga0209148_100008926 658
46 3300028794 Ga0307515_10000016 Ga0307515_10000016315 658
47 3300050511 nmdc:mga08y16_191559_c1 nmdc:mga08y16_191559_c1_65_2110 658
48 3300005365 Ga0070688_100016358 Ga0070688_1000163582 659
49 3300005539 Ga0068853_100024724 Ga0068853_1000247243 659
50 3300026095 Ga0207676_10085622 Ga0207676_100856222 659
51 3300003794 Ga0055531_10000014 Ga0055531_1000001481 660
52 3300025304 Ga0209257_1000004 Ga0209257_1000004577 660
53 3300025961 Ga0207712_10019578 Ga0207712_100195782 660
54 3300049654 Ga0501207_001960 Ga0501207_001960_366_2375 660
55 3300053088 Ga0500644_0000039 Ga0500644_0000039_42017_44104 660
56 3300053136 Ga0500559_0010964 Ga0500559_0010964_1418_3505 661
57 3300053156 Ga0500622_0001381 Ga0500622_0001381_17458_19506 661
58 3300053177 Ga0500636_0007878 Ga0500636_0007878_440_2527 661
59 3300039437 Ga0436365_1122703 Ga0436365_1122703_1958_4015 662
60 3300039437 Ga0436365_1520014 Ga0436365_1520014_1800_3815 663
61 3300003794 Ga0055531_10000438 Ga0055531_1000043818 664
62 3300025304 Ga0209257_1000005 Ga0209257_10000051341 664
63 3300049571 Ga0501034_0082020 Ga0501034_0082020_1145_3208 664
64 3300009176 Ga0105242_10065612 Ga0105242_100656122 666
65 3300025298 Ga0209050_1014782 Ga0209050_10147822 666
66 3300026118 Ga0207675_100010424 Ga0207675_1000104246 666
67 3300046460 Ga0495638_0000036 Ga0495638_0000036_216259_218304 666
68 3300053153 Ga0500616_0000004 Ga0500616_0000004_402082_404118 666
69 3300003316 rootH1_10047522 rootH1_100475223 667
70 3300005334 Ga0068869_100018054 Ga0068869_1000180542 667
71 3300005353 Ga0070669_100008105 Ga0070669_1000081054 667
72 3300005617 Ga0068859_100003439 Ga0068859_10000343915 667
73 3300005618 Ga0068864_100005772 Ga0068864_10000577210 667
74 3300006931 Ga0097620_100003439 Ga0097620_10000343915 667
75 3300009553 Ga0105249_10003915 Ga0105249_100039156 667
76 3300025942 Ga0207689_10086441 Ga0207689_100864412 667
77 3300025961 Ga0207712_10000864 Ga0207712_100008645 667
78 3300028381 Ga0268264_10014264 Ga0268264_100142642 667
79 3300053156 Ga0500622_0000014 Ga0500622_0000014_115274_117322 667
80 3300053156 Ga0500622_0000020 Ga0500622_0000020_118079_120127 667
81 3300026121 Ga0207683_10103902 Ga0207683_101039022 669
82 3300005289 Ga0065704_10074725 Ga0065704_100747253 670
83 3300003322 rootL2_10062473 rootL2_100624731 671
84 3300025926 Ga0207659_10046384 Ga0207659_100463842 671
85 iso_pu_bacteria 2818991460 2819677410 671
86 iso_pu_bacteria 2884791551 2884797329 671
87 iso_pu_bacteria 2929177148 2929177201 671
88 iso_pu_bacteria 2945977869 2945979568 671
89 iso_pu_bacteria 2946013367 2946014564 671
90 3300002459 JGI24751J29686_10000381 JGI24751J29686_100003818 672
91 3300009553 Ga0105249_10001920 Ga0105249_1000192012 672
92 3300025893 Ga0207682_10002162 Ga0207682_100021627 672
93 3300025940 Ga0207691_10007498 Ga0207691_100074988 672
94 3300026116 Ga0207674_10025201 Ga0207674_100252011 672
95 3300003323 rootH1_10011198 rootH1_100111982 673
96 3300006195 Ga0075366_10006283 Ga0075366_100062833 673
97 3300046453 Ga0495627_002511 Ga0495627_002511_4714_6759 673
98 3300046558 Ga0495633_0000025 Ga0495633_0000025_72050_74095 673
99 3300049569 Ga0501032_0000735 Ga0501032_0000735_4785_6839 673
100 3300049571 Ga0501034_0010961 Ga0501034_0010961_5816_7870 673
101 3300049572 Ga0501036_0002739 Ga0501036_0002739_10305_12359 673
102 3300049574 Ga0501038_0019921 Ga0501038_0019921_1432_3486 673
103 3300049579 Ga0501043_0005005 Ga0501043_0005005_6029_8083 673
104 3300049580 Ga0501046_0009951 Ga0501046_0009951_5270_7324 673
105 3300049581 Ga0501047_0002818 Ga0501047_0002818_6873_8927 673
106 3300049582 Ga0501048_0005121 Ga0501048_0005121_5314_7368 673
107 3300049586 Ga0501070_0010634 Ga0501070_0010634_1426_3480 673
108 3300049589 Ga0501073_0000302 Ga0501073_0000302_5816_7870 673
109 3300049590 Ga0501074_0003934 Ga0501074_0003934_2917_4971 673
110 3300049593 Ga0501077_0037068 Ga0501077_0037068_750_2804 673
111 3300049742 Ga0501080_0021078 Ga0501080_0021078_1464_3518 673
112 3300049744 Ga0501083_0000211 Ga0501083_0000211_2815_4869 673
113 3300049822 Ga0501035_0005274 Ga0501035_0005274_3293_5347 673
114 3300049823 Ga0501044_0002402 Ga0501044_0002402_5248_7302 673
115 3300049824 Ga0501045_0015634 Ga0501045_0015634_2888_4942 673
116 3300050493 nmdc:mga0k408_10647_c1 nmdc:mga0k408_10647_c1_2300_4357 673
117 3300054114 Ga0501084_0047046 Ga0501084_0047046_597_2651 673
118 3300060353 Ga0501082_0069064 Ga0501082_0069064_876_2930 673
119 iso_pu_bacteria 2896109856 2896114322 673
120 3300003354 JGI25160J50197_1002116 JGI25160J50197_10021166 674
121 3300005457 Ga0070662_100010599 Ga0070662_1000105992 674
122 3300006237 Ga0097621_100016949 Ga0097621_1000169492 674
123 3300025284 Ga0209130_1000976 Ga0209130_10009767 674
124 3300025302 Ga0207426_1000104 Ga0207426_1000104209 674
125 3300025302 Ga0207426_1000233 Ga0207426_100023323 674
126 3300044712 Ga0453684_0070413 Ga0453684_0070413_19_2061 674
127 3300049568 Ga0501031_0001662 Ga0501031_0001662_2895_4943 674
128 3300049572 Ga0501036_0014920 Ga0501036_0014920_3318_5366 674
129 3300049573 Ga0501037_0032394 Ga0501037_0032394_290_2338 674
130 3300049574 Ga0501038_0001686 Ga0501038_0001686_14854_16902 674
131 3300049579 Ga0501043_0003796 Ga0501043_0003796_681_2729 674
132 3300049823 Ga0501044_0002128 Ga0501044_0002128_31_2079 674
133 3300053156 Ga0500622_0000151 Ga0500622_0000151_27860_29908 674
134 iso_pu_bacteria 2818991442 2819576653 674
135 iso_pu_bacteria 2821136567 2821143118 674
136 iso_pu_bacteria 2904467357 2904470838 674
137 iso_pu_bacteria 2929154850 2929158870 674
138 iso_pu_bacteria 2929239360 2929239623 674
139 3300003320 rootH2_10021057 rootH2_1002105713 675
140 3300009553 Ga0105249_10038125 Ga0105249_100381252 675
141 3300053142 Ga0500577_0001218 Ga0500577_0001218_3089_5176 675
142 3300005459 Ga0068867_100077813 Ga0068867_1000778132 676
143 3300009176 Ga0105242_10080809 Ga0105242_100808091 676
144 3300039437 Ga0436365_1684945 Ga0436365_1684945_24204_26261 676
145 3300044658 Ga0466972_0000051 Ga0466972_0000051_28877_30946 677
146 3300044712 Ga0453684_0078610 Ga0453684_0078610_1119_3173 677
147 iso_pu_bacteria 2818991444 2819586220 677
148 3300025302 Ga0207426_1010278 Ga0207426_10102783 678
149 3300048924 Ga0496121_0000008 Ga0496121_0000008_191550_193610 678
150 3300053139 Ga0500568_0002431 Ga0500568_0002431_1783_3864 678
151 iso_pu_bacteria 2929921140 2929921253 678
152 iso_pu_bacteria 8003151029 8003156170 678
153 3300001989 JGI24739J22299_10007464 JGI24739J22299_100074642 680
154 3300003354 JGI25160J50197_1004078 JGI25160J50197_10040781 680
155 3300003790 Ga0055528_1000422 Ga0055528_10004222 680
156 3300003791 Ga0055530_10000475 Ga0055530_1000047520 680
157 3300005262 Ga0065165_1000258 Ga0065165_100025872 680
158 3300025273 Ga0209673_1000049 Ga0209673_100004937 680
159 3300025297 Ga0209758_1008745 Ga0209758_10087452 680
160 3300025298 Ga0209050_1000272 Ga0209050_100027244 680
161 3300025302 Ga0207426_1001311 Ga0207426_100131116 680
162 3300025302 Ga0207426_1007103 Ga0207426_10071033 680
163 3300025304 Ga0209257_1003403 Ga0209257_10034035 680
164 3300001979 JGI24740J21852_10003791 JGI24740J21852_100037912 682
165 3300002738 JGI25154J39366_1000002 JGI25154J39366_1000002307 682
166 3300003215 JGI25153J46596_10000187 JGI25153J46596_1000018713 682
167 3300025246 Ga0209646_1000005 Ga0209646_100000568 682
168 3300025250 Ga0209026_1000169 Ga0209026_10001695 682
169 3300025297 Ga0209758_1000346 Ga0209758_100034642 682
170 3300025302 Ga0207426_1000381 Ga0207426_100038135 682

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03169

OPT

OPT oligopeptide transporter protein

35

648

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7wst-assembly1.cif.gz_A cryo-em structure of the barley yellow stripe 1 transporter in complex with fe(iii)-dma 0.5885 15 641
7wst-assembly1.cif.gz_A cryo-em structure of the barley yellow stripe 1 transporter in complex with fe(iii)-dma 0.5789 15 641
5xtc-assembly1.cif.gz_V cryo-em structure of human respiratory complex i transmembrane arm 0.3471 335 470
5xtc-assembly1.cif.gz_V cryo-em structure of human respiratory complex i transmembrane arm 0.3119 335 470
6zo7-assembly1.cif.gz_A 3-formylrifamycin sv binding to the access pocket of acrb-g619p l and t protomer 0.3076 354 490
ID Description Score Start End Superfamily
af_P71749_10_605_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7787 18 629 1.20.1740.10
af_P71749_10_605_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7738 18 629 1.20.1740.10
af_Q54D87_360_584_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3695 358 537 1.20.1250.20
af_P9WJW7_210_393_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3666 291 534 1.20.1250.20
af_Q556Y5_341_577_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3645 358 547 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A7Y4QAC6-F1-model_v4 Oligopeptide transporter, OPT family 0.9346 1 603 GO:0016020
GO:0035673
AF-A0A7Y4QAC6-F1-model_v4 Oligopeptide transporter, OPT family 0.9301 1 603 GO:0016020
GO:0035673
AF-A0A4Q3NJK3-F1-model_v4 Peptide transporter 0.9035 228 682 GO:0016020
GO:0035673
AF-A0A2V9MJB6-F1-model_v4 Oligopeptide transporter, OPT family 0.9034 6 627 GO:0016020
GO:0035673
AF-A0A496SRQ8-F1-model_v4 Oligopeptide transporter, OPT family 0.8964 6 568 GO:0016020
GO:0035673

Feature Viewer

pLDDT pTM Quality
72.95 0.77 High
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Predicted Structure (AlphaFold2)

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