F257527

General Info

Members Datasets Scaffolds Average Seq Length
170 113 158 586

Family's Representative Sequence

Representative Sequence 3300048928|Ga0496125_0003302|Ga0496125_0003302_7887_9914
Length 675
Sequence MELKHIDIAHLSVSSANMRAKGKTPDLTNILPSVRARGVLVPLIVRQNGSPDSYEIVAGKRRYHAALAVAQESGEAEALPCAIMAAGDDVAALEASLIENVARLDPDEVTRWESFTRLVREGRNVEDIALTFGLTELQVKRTLALGNLLPRIRTLYRQNEIDAATIRHLTLLSKVRQREWLALLDDPAAYCPTGSRLKSWACGGASIPVSAALFDLASFPGSIVSDLFGEERYFADASIFWTSQEAAIAQRAEVYRQAGWQDVVILPVGEPFHSWDHECTPKRKGGKVFIAVGPRGDVTFHEGYLTIREARKQAAGETMTEKPVRPEIGPAIRNYVDLHRHAVVRAAVAGSPSLALRLMVAHVIAGSSLWRVSVEPQRAVNEAVAESIETSISETAFDARRRAVLALLGFDPEASTVTGGYEGDHGVASLFVRLASLSDEAVQEVLTIVMAETLEAGNALVDLLGLHLNIDMREAWSCDDALLDQLRDREVLDGILTEVAGEEAAVANGRATGKVKRQIVRDCLTGENGRAKVEGWVPRWMAFPPTAYTERGGVPTVGWPIWSHPSRRNRPRWPRRPDPIPAGAKPPVFPVGRFPMNDSHDPALLERLEDALLRLPQIQRDIFLAVRLDALSYGEIAERTGLTRRQAERLFAKALGNFSRNLRDPLRQRWRRWFR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
3 2808606401 Sphingobium sp. AEW010 Isolate Rhizosphere
4 2808606404 Sphingobium sp. AEW013 Isolate Rhizosphere
5 2808606405 Sphingobium sp. AEW001 Isolate Rhizosphere
6 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
7 2880518877 Sphingobium sp. JAI105 Isolate Rhizosphere
8 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
9 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
10 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
11 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
12 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
13 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
14 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
15 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
18 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
19 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
42 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
43 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
44 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
45 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
49 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
51 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
72 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
73 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
74 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
81 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
82 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
83 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
84 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
85 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
86 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
87 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
88 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
89 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
90 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
91 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
94 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
97 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
98 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
99 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
100 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
105 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
106 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
107 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
108 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
109 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
110 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
111 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
112 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
113 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.53
Metatranscriptomes 0
Isolates 6.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 31.18
Nodule 0
Rhizoplane 2.35
Rhizosphere 60
Stem 0
Stem Tuber 0
Unclassified 6.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_892759 2162886007 Bacteria 2152
2 JGI24737J22298_10013386 3300001990 Bacteria 2670
3 JGI24735J21928_10003173 3300002067 Bacteria 5621
4 JGI24735J21928_10013896 3300002067 Bacteria 2526
5 JGI25150J39212_1000020 3300002774 Bacteria 134928
6 JGI25150J39212_1000333 3300002774 Bacteria 23253
7 JGI25165J46597_1000023 3300003214 Bacteria 338873
8 JGI25165J46597_1000040 3300003214 Bacteria 277491
9 JGI25153J46596_10000002 3300003215 Bacteria 653569
10 JGI25153J46596_10000017 3300003215 Bacteria 274325
11 JGI25153J46596_10000046 3300003215 Bacteria 148355
12 JGI25153J46596_10000055 3300003215 Bacteria 135518
13 Ga0055526_1000046 3300003771 Bacteria 120614
14 Ga0055537_1000758 3300003773 Bacteria 16504
15 Ga0055530_10000249 3300003791 Bacteria 48825
16 Ga0055531_10000008 3300003794 Bacteria 222269
17 Ga0055531_10000431 3300003794 Bacteria 39766
18 Ga0055531_10000808 3300003794 Bacteria 25932
19 Ga0065704_10099672 3300005289 Bacteria 2294
20 Ga0070658_10077768 3300005327 Bacteria 2722
21 Ga0070668_100005606 3300005347 Bacteria 9304
22 Ga0070668_100036857 3300005347 Bacteria 3732
23 Ga0070667_100001064 3300005367 Bacteria 25098
24 Ga0070667_100001788 3300005367 Bacteria 19134
25 Ga0070665_100000385 3300005548 Bacteria 65243
26 Ga0068854_100000188 3300005578 Bacteria 41566
27 Ga0068854_100019914 3300005578 Bacteria 4530
28 Ga0068854_100056017 3300005578 Bacteria 2840
29 Ga0068856_100001097 3300005614 Bacteria 28577
30 Ga0068852_100048181 3300005616 Bacteria 3640
31 Ga0068851_10005835 3300005834 Bacteria 5609
32 Ga0068863_100009304 3300005841 Bacteria 9586
33 Ga0068858_100000769 3300005842 Bacteria 33482
34 Ga0068860_100040013 3300005843 Bacteria 4482
35 Ga0075365_10020958 3300006038 Bacteria 4067
36 Ga0105251_10001427 3300009011 Bacteria 20595
37 Ga0105245_10000294 3300009098 Bacteria 47730
38 Ga0105241_10009223 3300009174 Bacteria 7256
39 Ga0105237_10013825 3300009545 Bacteria 8450
40 Ga0157373_10018810 3300013100 Bacteria 5027
41 Ga0157370_10025634 3300013104 Bacteria 5835
42 Ga0157369_10001136 3300013105 Bacteria 33292
43 Ga0157369_10026093 3300013105 Bacteria 6482
44 Ga0157372_10000939 3300013307 Bacteria 31791
45 Ga0157372_10034820 3300013307 Bacteria 5540
46 Ga0157380_10004331 3300014326 Bacteria 9844
47 Ga0163161_10051242 3300017792 Bacteria 2989
48 Ga0207427_100999 3300025231 Bacteria 11870
49 Ga0207427_101342 3300025231 Bacteria 9112
50 Ga0207425_1000005 3300025245 Bacteria 900502
51 Ga0207425_1000022 3300025245 Bacteria 355305
52 Ga0209129_1000387 3300025258 Bacteria 35441
53 Ga0209129_1001165 3300025258 Bacteria 15153
54 Ga0209233_1000003 3300025261 Bacteria 1607366
55 Ga0209565_1000245 3300025263 Bacteria 58278
56 Ga0209673_1002400 3300025273 Bacteria 13106
57 Ga0209676_1001249 3300025292 Bacteria 26699
58 Ga0209676_1002451 3300025292 Bacteria 13155
59 Ga0209025_1000318 3300025294 Bacteria 107348
60 Ga0209025_1000873 3300025294 Bacteria 47373
61 Ga0209564_1000277 3300025295 Bacteria 105818
62 Ga0209564_1001239 3300025295 Bacteria 28706
63 Ga0209758_1000001 3300025297 Bacteria 1981790
64 Ga0209758_1000002 3300025297 Bacteria 1400310
65 Ga0209758_1000004 3300025297 Bacteria 1375322
66 Ga0209758_1000005 3300025297 Bacteria 1368918
67 Ga0209050_1000026 3300025298 Bacteria 499134
68 Ga0209050_1000801 3300025298 Bacteria 44325
69 Ga0209050_1001419 3300025298 Bacteria 25868
70 Ga0209050_1002605 3300025298 Bacteria 14941
71 Ga0209051_1014528 3300025303 Bacteria 3668
72 Ga0209257_1000009 3300025304 Bacteria 1205047
73 Ga0209257_1000395 3300025304 Bacteria 86373
74 Ga0209257_1000558 3300025304 Bacteria 63862
75 Ga0207656_10010426 3300025321 Bacteria 3482
76 Ga0207647_10033425 3300025904 Bacteria 3293
77 Ga0207705_10000471 3300025909 Bacteria 34547
78 Ga0207705_10001620 3300025909 Bacteria 17865
79 Ga0207671_10000821 3300025914 Bacteria 39371
80 Ga0207657_10000437 3300025919 Bacteria 44331
81 Ga0207681_10010348 3300025923 Bacteria 5708
82 Ga0207681_10067707 3300025923 Bacteria 2477
83 Ga0207694_10004237 3300025924 Bacteria 11230
84 Ga0207687_10001319 3300025927 Bacteria 16976
85 Ga0207668_10022248 3300025972 Bacteria 4055
86 Ga0207640_10000284 3300025981 Bacteria 34016
87 Ga0207640_10014430 3300025981 Bacteria 4551
88 Ga0207658_10000849 3300025986 Bacteria 25528
89 Ga0207658_10002312 3300025986 Bacteria 14034
90 Ga0207658_10019889 3300025986 Bacteria 4646
91 Ga0207658_10071929 3300025986 Bacteria 2620
92 Ga0207703_10000686 3300026035 Bacteria 33490
93 Ga0207702_10001052 3300026078 Bacteria 28278
94 Ga0207641_10000504 3300026088 Bacteria 43890
95 Ga0207641_10142044 3300026088 Bacteria 2167
96 Ga0207698_10020055 3300026142 Bacteria 4593
97 Ga0268266_10000338 3300028379 Bacteria 73458
98 Ga0307408_100000504 3300031548 Bacteria 33924
99 Ga0307408_100013902 3300031548 Bacteria 5345
100 Ga0307408_100038642 3300031548 Bacteria 3368
101 Ga0307405_10000287 3300031731 Bacteria 18706
102 Ga0307405_10003986 3300031731 Bacteria 6915
103 Ga0307406_10063517 3300031901 Bacteria 2392
104 Ga0307412_10010976 3300031911 Bacteria 5230
105 Ga0307510_10006809 3300033180 Bacteria 13632
106 Ga0395899_0005135 3300037312 Bacteria 10178
107 Ga0395900_0128734 3300037418 Bacteria 2595
108 Ga0395898_0184653 3300037466 Bacteria 1993
109 Ga0395905_0013396 3300037471 Bacteria 7857
110 Ga0395905_0063107 3300037471 Bacteria 3466
111 Ga0395905_0097180 3300037471 Bacteria 2765
112 Ga0395901_0078646 3300038443 Bacteria 3443
113 Ga0439445_0000592 3300042004 Bacteria 7424
114 Ga0439445_0001284 3300042004 Bacteria 5433
115 Ga0466958_0027491 3300045836 Bacteria 3367
116 Ga0495627_000127 3300046453 Bacteria 92757
117 Ga0495627_000225 3300046453 Bacteria 60005
118 Ga0495627_008739 3300046453 Bacteria 3772
119 Ga0495610_0000134 3300046512 Bacteria 82325
120 Ga0495610_0000744 3300046512 Bacteria 30939
121 Ga0495610_0018775 3300046512 Bacteria 3889
122 Ga0495632_0000863 3300046519 Bacteria 26671
123 Ga0495637_0000100 3300046520 Bacteria 65373
124 Ga0495643_0000010 3300046522 Bacteria 341431
125 Ga0495643_0000251 3300046522 Bacteria 78874
126 Ga0495633_0000054 3300046558 Bacteria 151646
127 Ga0495633_0005522 3300046558 Bacteria 7696
128 Ga0495625_0000762 3300046660 Bacteria 44878
129 Ga0495670_0000042 3300046691 Bacteria 69501
130 Ga0495671_0000014 3300046692 Bacteria 341431
131 Ga0495681_0000056 3300047470 Bacteria 103692
132 Ga0495681_0000523 3300047470 Bacteria 29297
133 Ga0495686_0000469 3300047472 Bacteria 60229
134 Ga0495615_0000134 3300048090 Bacteria 18520
135 Ga0496103_0008534 3300048906 Bacteria 6089
136 Ga0496108_0079785 3300048911 Bacteria 2771
137 Ga0496115_0000401 3300048918 Bacteria 35652
138 Ga0496115_0004284 3300048918 Bacteria 10329
139 Ga0496118_0013003 3300048921 Bacteria 7920
140 Ga0496122_0012082 3300048925 Bacteria 8655
141 Ga0496123_0002142 3300048926 Bacteria 25232
142 Ga0496123_0045517 3300048926 Bacteria 2988
143 Ga0496124_0006629 3300048927 Bacteria 12567
144 Ga0496124_0060737 3300048927 Bacteria 3170
145 Ga0496125_0000525 3300048928 Bacteria 66539
146 Ga0496125_0003302 3300048928 Bacteria 19780
147 Ga0496125_0024716 3300048928 Bacteria 5517
148 Ga0501211_000723 3300049658 Bacteria 3372
149 nmdc:mga0yw44_2777_c1 3300050492 Bacteria 7585
150 Ga0500647_0035767 3300053091 Bacteria 2374
151 Ga0500556_0000021 3300053104 Bacteria 184159
152 Ga0500608_000152 3300053122 Bacteria 28853
153 Ga0500642_0000737 3300053130 Bacteria 9651
154 Ga0500655_000030 3300053133 Bacteria 39615
155 Ga0500658_0000506 3300053134 Bacteria 16665
156 Ga0500573_0000036 3300053140 Bacteria 110394
157 Ga0500590_001666 3300053148 Bacteria 9298
158 Ga0500622_0045603 3300053156 Bacteria 2269

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048926 Ga0496123_0045517 Ga0496123_0045517_12_1655 542
2 3300014326 Ga0157380_10004331 Ga0157380_1000433110 550
3 3300006038 Ga0075365_10020958 Ga0075365_100209582 554
4 3300050492 nmdc:mga0yw44_2777_c1 nmdc:mga0yw44_2777_c1_4210_5907 554
5 3300003215 JGI25153J46596_10000046 JGI25153J46596_1000004635 555
6 3300025297 Ga0209758_1000005 Ga0209758_1000005222 555
7 3300025986 Ga0207658_10071929 Ga0207658_100719291 557
8 3300048927 Ga0496124_0006629 Ga0496124_0006629_9200_11044 557
9 3300046519 Ga0495632_0000863 Ga0495632_0000863_13066_14820 559
10 3300025909 Ga0207705_10001620 Ga0207705_100016202 561
11 3300025986 Ga0207658_10019889 Ga0207658_100198894 561
12 3300005327 Ga0070658_10077768 Ga0070658_100777682 563
13 3300025909 Ga0207705_10000471 Ga0207705_1000047122 563
14 3300053148 Ga0500590_001666 Ga0500590_001666_7366_9150 564
15 3300053156 Ga0500622_0045603 Ga0500622_0045603_363_2123 564
16 3300005841 Ga0068863_100009304 Ga0068863_1000093048 565
17 3300026088 Ga0207641_10000504 Ga0207641_100005047 565
18 3300037471 Ga0395905_0063107 Ga0395905_0063107_1622_3418 566
19 3300048906 Ga0496103_0008534 Ga0496103_0008534_1224_3068 566
20 3300048921 Ga0496118_0013003 Ga0496118_0013003_684_2528 566
21 3300045836 Ga0466958_0027491 Ga0466958_0027491_225_1937 567
22 3300001990 JGI24737J22298_10013386 JGI24737J22298_100133862 572
23 3300009174 Ga0105241_10009223 Ga0105241_100092238 572
24 3300033180 Ga0307510_10006809 Ga0307510_1000680910 573
25 iso_pu_bacteria 2808606401 2809064482 573
26 iso_pu_bacteria 2808606404 2809080353 573
27 iso_pu_bacteria 2808606405 2809084814 573
28 iso_pu_bacteria 2880518877 2880519257 573
29 3300002774 JGI25150J39212_1000333 JGI25150J39212_100033323 574
30 3300003215 JGI25153J46596_10000055 JGI25153J46596_1000005583 574
31 3300025245 Ga0207425_1000005 Ga0207425_1000005616 574
32 3300025258 Ga0209129_1001165 Ga0209129_10011651 574
33 3300025294 Ga0209025_1000873 Ga0209025_100087312 574
34 3300025297 Ga0209758_1000002 Ga0209758_1000002728 574
35 3300003773 Ga0055537_1000758 Ga0055537_100075812 575
36 3300003791 Ga0055530_10000249 Ga0055530_1000024912 575
37 3300003794 Ga0055531_10000008 Ga0055531_10000008173 575
38 3300003794 Ga0055531_10000431 Ga0055531_1000043112 575
39 3300003794 Ga0055531_10000808 Ga0055531_100008088 575
40 3300005367 Ga0070667_100001064 Ga0070667_10000106417 575
41 3300025263 Ga0209565_1000245 Ga0209565_100024526 575
42 3300025273 Ga0209673_1002400 Ga0209673_100240011 575
43 3300025292 Ga0209676_1001249 Ga0209676_100124916 575
44 3300025292 Ga0209676_1002451 Ga0209676_10024513 575
45 3300025295 Ga0209564_1001239 Ga0209564_100123916 575
46 3300025298 Ga0209050_1000026 Ga0209050_100002612 575
47 3300025298 Ga0209050_1000801 Ga0209050_100080116 575
48 3300025298 Ga0209050_1001419 Ga0209050_100141916 575
49 3300025298 Ga0209050_1002605 Ga0209050_10026059 575
50 3300025303 Ga0209051_1014528 Ga0209051_10145281 575
51 3300025304 Ga0209257_1000009 Ga0209257_100000912 575
52 3300025304 Ga0209257_1000395 Ga0209257_100039562 575
53 3300025304 Ga0209257_1000558 Ga0209257_100055831 575
54 3300025986 Ga0207658_10002312 Ga0207658_100023124 575
55 3300037418 Ga0395900_0128734 Ga0395900_0128734_216_1973 575
56 3300037466 Ga0395898_0184653 Ga0395898_0184653_146_1903 575
57 3300037471 Ga0395905_0013396 Ga0395905_0013396_221_1978 575
58 3300038443 Ga0395901_0078646 Ga0395901_0078646_157_1914 575
59 iso_pu_bacteria 2852653556 2852656652 575
60 3300042004 Ga0439445_0000592 Ga0439445_0000592_4389_6131 576
61 3300042004 Ga0439445_0001284 Ga0439445_0001284_2645_4381 576
62 3300048918 Ga0496115_0000401 Ga0496115_0000401_2211_3953 576
63 3300053140 Ga0500573_0000036 Ga0500573_0000036_17413_19155 576
64 iso_pu_bacteria 2928526807 2928527051 576
65 3300002067 JGI24735J21928_10003173 JGI24735J21928_100031735 577
66 3300005578 Ga0068854_100056017 Ga0068854_1000560173 577
67 3300005834 Ga0068851_10005835 Ga0068851_100058357 577
68 3300025321 Ga0207656_10010426 Ga0207656_100104263 577
69 3300025904 Ga0207647_10033425 Ga0207647_100334253 577
70 iso_pu_bacteria 2643221605 2644038053 577
71 3300002067 JGI24735J21928_10013896 JGI24735J21928_100138962 578
72 3300005347 Ga0070668_100005606 Ga0070668_1000056063 578
73 3300005616 Ga0068852_100048181 Ga0068852_1000481813 578
74 3300013105 Ga0157369_10026093 Ga0157369_100260931 578
75 3300025972 Ga0207668_10022248 Ga0207668_100222483 578
76 3300026142 Ga0207698_10020055 Ga0207698_100200555 578
77 3300031548 Ga0307408_100038642 Ga0307408_1000386423 578
78 3300031731 Ga0307405_10000287 Ga0307405_100002874 578
79 3300049658 Ga0501211_000723 Ga0501211_000723_375_2120 578
80 3300053091 Ga0500647_0035767 Ga0500647_0035767_13_1758 578
81 3300053122 Ga0500608_000152 Ga0500608_000152_15339_17084 578
82 3300053130 Ga0500642_0000737 Ga0500642_0000737_6114_7883 578
83 3300002774 JGI25150J39212_1000020 JGI25150J39212_100002021 579
84 3300003215 JGI25153J46596_10000017 JGI25153J46596_10000017195 579
85 3300025245 Ga0207425_1000022 Ga0207425_1000022243 579
86 3300025258 Ga0209129_1000387 Ga0209129_10003879 579
87 3300025294 Ga0209025_1000318 Ga0209025_100031850 579
88 3300025297 Ga0209758_1000004 Ga0209758_1000004870 579
89 3300048918 Ga0496115_0004284 Ga0496115_0004284_8270_10024 579
90 3300053134 Ga0500658_0000506 Ga0500658_0000506_10059_11810 579
91 3300003771 Ga0055526_1000046 Ga0055526_100004634 580
92 3300013307 Ga0157372_10034820 Ga0157372_100348202 580
93 3300025295 Ga0209564_1000277 Ga0209564_100027774 580
94 3300046691 Ga0495670_0000042 Ga0495670_0000042_58286_60046 580
95 iso_pu_bacteria 2808606401 2809065903 580
96 iso_pu_bacteria 2808606404 2809081923 580
97 iso_pu_bacteria 2808606405 2809086286 580
98 3300003215 JGI25153J46596_10000002 JGI25153J46596_10000002344 581
99 3300005548 Ga0070665_100000385 Ga0070665_1000003857 581
100 3300009545 Ga0105237_10013825 Ga0105237_100138253 581
101 3300025297 Ga0209758_1000001 Ga0209758_10000011141 581
102 3300025914 Ga0207671_10000821 Ga0207671_1000082136 581
103 3300028379 Ga0268266_10000338 Ga0268266_1000033862 581
104 3300046522 Ga0495643_0000251 Ga0495643_0000251_27604_29355 581
105 3300053133 Ga0500655_000030 Ga0500655_000030_4515_6266 581
106 3300005578 Ga0068854_100019914 Ga0068854_1000199143 582
107 3300013100 Ga0157373_10018810 Ga0157373_100188105 582
108 3300013104 Ga0157370_10025634 Ga0157370_100256345 582
109 3300025919 Ga0207657_10000437 Ga0207657_1000043717 582
110 3300025924 Ga0207694_10004237 Ga0207694_100042375 582
111 3300025981 Ga0207640_10014430 Ga0207640_100144304 582
112 3300037471 Ga0395905_0097180 Ga0395905_0097180_834_2624 582
113 3300046453 Ga0495627_000127 Ga0495627_000127_89443_91209 582
114 3300009098 Ga0105245_10000294 Ga0105245_1000029427 583
115 3300025927 Ga0207687_10001319 Ga0207687_1000131914 583
116 3300047472 Ga0495686_0000469 Ga0495686_0000469_26981_28750 583
117 3300003214 JGI25165J46597_1000023 JGI25165J46597_1000023349 584
118 3300003214 JGI25165J46597_1000040 JGI25165J46597_1000040260 584
119 3300005578 Ga0068854_100000188 Ga0068854_10000018829 584
120 3300005614 Ga0068856_100001097 Ga0068856_1000010979 584
121 3300005842 Ga0068858_100000769 Ga0068858_10000076913 584
122 3300013105 Ga0157369_10001136 Ga0157369_1000113613 584
123 3300013307 Ga0157372_10000939 Ga0157372_1000093913 584
124 3300017792 Ga0163161_10051242 Ga0163161_100512422 584
125 3300025231 Ga0207427_100999 Ga0207427_1009993 584
126 3300025231 Ga0207427_101342 Ga0207427_1013428 584
127 3300025261 Ga0209233_1000003 Ga0209233_10000031184 584
128 3300025261 Ga0209233_1000003 Ga0209233_1000003224 584
129 3300025981 Ga0207640_10000284 Ga0207640_100002848 584
130 3300026035 Ga0207703_10000686 Ga0207703_1000068621 584
131 3300026078 Ga0207702_10001052 Ga0207702_1000105210 584
132 3300037312 Ga0395899_0005135 Ga0395899_0005135_7393_9153 584
133 3300005843 Ga0068860_100040013 Ga0068860_1000400136 585
134 3300025923 Ga0207681_10010348 Ga0207681_100103481 585
135 3300026088 Ga0207641_10142044 Ga0207641_101420442 585
136 3300046512 Ga0495610_0000134 Ga0495610_0000134_75607_77373 585
137 3300046512 Ga0495610_0000744 Ga0495610_0000744_5263_7104 585
138 3300047470 Ga0495681_0000523 Ga0495681_0000523_6397_8163 585
139 3300046453 Ga0495627_008739 Ga0495627_008739_1157_2995 586
140 3300005347 Ga0070668_100036857 Ga0070668_1000368573 587
141 3300048928 Ga0496125_0000525 Ga0496125_0000525_4541_6469 587
142 3300025923 Ga0207681_10067707 Ga0207681_100677072 588
143 3300048928 Ga0496125_0003302 Ga0496125_0003302_7887_9914 589
144 iso_pu_bacteria 8054302542 8054305138 589
145 3300046660 Ga0495625_0000762 Ga0495625_0000762_20601_22439 590
146 3300048090 Ga0495615_0000134 Ga0495615_0000134_840_2669 590
147 3300048925 Ga0496122_0012082 Ga0496122_0012082_743_2572 590
148 3300048926 Ga0496123_0002142 Ga0496123_0002142_18361_20190 590
149 3300046520 Ga0495637_0000100 Ga0495637_0000100_39903_41696 591
150 3300046522 Ga0495643_0000010 Ga0495643_0000010_294763_296556 591
151 3300046558 Ga0495633_0005522 Ga0495633_0005522_45_1838 591
152 3300046692 Ga0495671_0000014 Ga0495671_0000014_294763_296556 591
153 3300053104 Ga0500556_0000021 Ga0500556_0000021_35580_37364 593
154 2162886007 SwRhRL2b_contig_892759 SwRhRL2b_0694.00005540 594
155 3300005289 Ga0065704_10099672 Ga0065704_100996722 594
156 3300005367 Ga0070667_100001788 Ga0070667_1000017882 594
157 3300009011 Ga0105251_10001427 Ga0105251_1000142710 594
158 3300025986 Ga0207658_10000849 Ga0207658_1000084930 594
159 3300031548 Ga0307408_100000504 Ga0307408_10000050424 594
160 3300031548 Ga0307408_100013902 Ga0307408_1000139025 594
161 3300031731 Ga0307405_10003986 Ga0307405_100039869 594
162 3300031901 Ga0307406_10063517 Ga0307406_100635171 594
163 3300031911 Ga0307412_10010976 Ga0307412_100109761 594
164 3300046453 Ga0495627_000225 Ga0495627_000225_2838_4640 594
165 3300046512 Ga0495610_0018775 Ga0495610_0018775_1413_3215 594
166 3300046558 Ga0495633_0000054 Ga0495633_0000054_68319_70121 594
167 3300047470 Ga0495681_0000056 Ga0495681_0000056_12857_14659 594
168 3300048911 Ga0496108_0079785 Ga0496108_0079785_685_2472 594
169 3300048927 Ga0496124_0060737 Ga0496124_0060737_1222_3006 594
170 3300048928 Ga0496125_0024716 Ga0496125_0024716_852_2654 594

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

605

657

0.94

PF02195

ParBc

ParB/Sulfiredoxin domain

4

101

0.93

Feature Viewer

pLDDT pTM Quality
84.48 0.45 Low
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map